Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

14896588 .. 14897088

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G007110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGATTATGGCGGCGATTGAGGCGCTTAATGAGAGCGAGGGGTCGAACAAGACCTCAATCGCGCAGCAAATCGAGTCCACCTACGACGATCTGCCGCCGGCTCACGCCACGCTTCTGGCGCACCACCTCAACAAGATGAAGCAGAGCGGCGAGCTCGTTTTCGTCAAGAACAACTACATGAAGCCCGACCCCAACGCGCCGCCCAAGCGGGGCCGTGGCCGCCCGCCCAAGCCCAAGGTCCCGGCGCCGGAAGGAGCCGCCGTGGTCTCCTCGCCTCCGAGGCCATGTGGCAGACCTCCCAAGCCTAGGGATCCGTTTTTCCCGCTCCCAATTGCCAAGAGCTCGACATCCACCGGGTCCGGCAGGCCACGTGGCCGCCCTCCGAAGAAGGCCAAGACAAGTCCGACCTCGACTCCGGCTTCGGCTCCGGCGAGTGGTGCCCCTAGAGGTAGAGGCAGGCCACTGAAAGTCAAGCCCTCCGTAGCTCCGGTGGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

166

Amino Acids

17.43

Weight (kDa)

10.6

Isoelectric Point (pI)

64.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	1 - 57	2.3e-07	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	244, 437
AccBSI	CCGCTC	2 cut(s)	147, 325
AccII	CGCG	2 cut(s)	62, 197
AclWI	GGATC	2 cut(s)	305, 318
AcoI	YGGCCR	2 cut(s)	217, 373
AcvI	CACGTG	1 cut(s)	371
AcyI	GRCGYC	1 cut(s)	245
AfiI	CCNNNNNNNGG	4 cut(s)	209, 247, 306, 434
AluBI	AGCT	3 cut(s)	154, 342, 485
AluI	AGCT	3 cut(s)	154, 342, 485
Alw21I	GWGCWC	2 cut(s)	156, 344
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	2 cut(s)	305, 318
AoxI	GGCC	7 cut(s)	211, 217, 281, 365, 373, 390, 458
ApeKI	GCWGC	1 cut(s)	64
ArsI	GACNNNNNNTTYG	2 cut(s)	403, 435
AspA2I	CCTAGG	1 cut(s)	305
AspLEI	GCGC	5 cut(s)	25, 64, 121, 199, 247
AspS9I	GGNCC	3 cut(s)	211, 238, 357
AsuC2I	CCSGG	2 cut(s)	242, 355
AvaII	GGWCC	2 cut(s)	238, 357
AvrII	CCTAGG	1 cut(s)	305
BaeGI	GKGCMC	1 cut(s)	442
BamHI	GGATCC	1 cut(s)	310
BanI	GGYRCC	2 cut(s)	244, 437
BanII	GRGCYC	2 cut(s)	156, 344
BbrPI	CACGTG	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	156, 344
BbvI	GCAGC	1 cut(s)	76
BceAI	ACGGC	2 cut(s)	198, 245
BcnI	CCSGG	2 cut(s)	242, 355
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	306, 444
BfoI	RGCGCY	2 cut(s)	26, 248
BglI	GCCNNNNNGGC	1 cut(s)	280
BisI	GCNGC	8 cut(s)	12, 65, 95, 148, 200, 220, 258, 376
BlnI	CCTAGG	1 cut(s)	305
BlsI	GCNGC	8 cut(s)	13, 66, 96, 149, 201, 221, 259, 377
Bme1390I	CCNGG	2 cut(s)	242, 355
Bme18I	GGWCC	2 cut(s)	238, 357
BmgT120I	GGNCC	3 cut(s)	211, 238, 357
BmiI	GGNNCC	8 cut(s)	212, 240, 246, 256, 312, 358, 426, 439
BmrFI	CCNGG	2 cut(s)	242, 355
BpuMI	CCSGG	2 cut(s)	242, 355
BsaAI	YACGTR	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	5 cut(s)	214, 234, 261, 278, 305
BsaWI	WCCGGW	1 cut(s)	487
BsaXI	ACNNNNNCTCC	4 cut(s)	246, 276, 397, 427
Bsc4I	CCNNNNNNNGG	4 cut(s)	209, 247, 306, 434
Bse118I	RCCGGY	1 cut(s)	97
BseDI	CCNNGG	5 cut(s)	214, 234, 261, 278, 305
BseGI	GGATG	1 cut(s)	347
BseLI	CCNNNNNNNGG	4 cut(s)	209, 247, 306, 434
BseRI	GAGGAG	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	76
Bsh1236I	CGCG	2 cut(s)	62, 197
BshFI	GGCC	7 cut(s)	213, 219, 283, 367, 375, 392, 460
BshNI	GGYRCC	2 cut(s)	244, 437
BsiHKAI	GWGCWC	2 cut(s)	156, 344
BsiSI	CCGG	8 cut(s)	98, 242, 248, 354, 360, 416, 428, 488
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	4 cut(s)	209, 247, 306, 434
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	7 cut(s)	213, 219, 283, 367, 375, 392, 460
Bso31I	GGTCTC	1 cut(s)	271
Bsp1286I	GDGCHC	3 cut(s)	156, 344, 442
Bsp143I	GATC	2 cut(s)	88, 310
BspANI	GGCC	7 cut(s)	213, 219, 283, 367, 375, 392, 460
BspFNI	CGCG	2 cut(s)	62, 197
BspLI	GGNNCC	8 cut(s)	212, 240, 246, 256, 312, 358, 426, 439
BspPI	GGATC	2 cut(s)	305, 318
BspT107I	GGYRCC	2 cut(s)	244, 437
BspTNI	GGTCTC	1 cut(s)	271
BsrBI	CCGCTC	2 cut(s)	147, 325
BsrFI	RCCGGY	1 cut(s)	97
BssAI	RCCGGY	1 cut(s)	97
BssECI	CCNNGG	5 cut(s)	214, 234, 261, 278, 305
BssMI	GATC	2 cut(s)	88, 310
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	2 cut(s)	234, 305
BstACI	GRCGYC	1 cut(s)	245
BstBAI	YACGTR	1 cut(s)	371
BstC8I	GCNNGC	5 cut(s)	99, 152, 224, 365, 458
BstDSI	CCRYGG	2 cut(s)	214, 261
BstF5I	GGATG	1 cut(s)	347
BstFNI	CGCG	2 cut(s)	62, 197
BstH2I	RGCGCY	2 cut(s)	26, 248
BstHHI	GCGC	5 cut(s)	25, 64, 121, 199, 247
BstKTI	GATC	2 cut(s)	91, 313
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	2 cut(s)	88, 310
BstMWI	GCNNNNNNNGC	6 cut(s)	20, 118, 205, 219, 280, 437
BstSCI	CCNGG	2 cut(s)	240, 353
BstSLI	GKGCMC	1 cut(s)	442
BstUI	CGCG	2 cut(s)	62, 197
BstV1I	GCAGC	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	310
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	310
BsuRI	GGCC	7 cut(s)	213, 219, 283, 367, 375, 392, 460
BtgI	CCRYGG	2 cut(s)	214, 261
BtsCI	GGATG	1 cut(s)	347
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	5 cut(s)	99, 152, 224, 365, 458
CfoI	GCGC	5 cut(s)	25, 64, 121, 199, 247
Cfr10I	RCCGGY	1 cut(s)	97
Cfr13I	GGNCC	3 cut(s)	211, 238, 357
CviAII	CATG	2 cut(s)	178, 285
DinI	GGCGCC	1 cut(s)	246
DpnI	GATC	2 cut(s)	90, 312
DpnII	GATC	2 cut(s)	88, 310
EaeI	YGGCCR	2 cut(s)	217, 373
Ecl136II	GAGCTC	2 cut(s)	154, 342
Eco130I	CCWWGG	2 cut(s)	234, 305
Eco24I	GRGCYC	2 cut(s)	156, 344
Eco31I	GGTCTC	1 cut(s)	271
Eco47I	GGWCC	2 cut(s)	238, 357
Eco53kI	GAGCTC	2 cut(s)	154, 342
Eco72I	CACGTG	1 cut(s)	371
EcoICRI	GAGCTC	2 cut(s)	154, 342
EcoO109I	RGGNCCY	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	234, 305
EcoT38I	GRGCYC	2 cut(s)	156, 344
EgeI	GGCGCC	1 cut(s)	246
EheI	GGCGCC	1 cut(s)	246
ErhI	CCWWGG	2 cut(s)	234, 305
FaeI	CATG	2 cut(s)	181, 288
FaiI	YATR	3 cut(s)	8, 179, 286
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	2 cut(s)	177, 284
FauI	CCCGC	3 cut(s)	201, 231, 330
Fnu4HI	GCNGC	8 cut(s)	12, 65, 95, 148, 200, 220, 258, 376
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	2 cut(s)	156, 344
Fsp4HI	GCNGC	8 cut(s)	12, 65, 95, 148, 200, 220, 258, 376
FspBI	CTAG	2 cut(s)	306, 444
GlaI	GCGC	5 cut(s)	24, 63, 120, 198, 246
GluI	GCNGC	8 cut(s)	12, 65, 95, 148, 200, 220, 258, 376
HaeII	RGCGCY	2 cut(s)	26, 248
HaeIII	GGCC	7 cut(s)	213, 219, 283, 367, 375, 392, 460
HapII	CCGG	8 cut(s)	98, 242, 248, 354, 360, 416, 428, 488
HhaI	GCGC	5 cut(s)	25, 64, 121, 199, 247
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	181, 288
Hin6I	GCGC	5 cut(s)	23, 62, 119, 197, 245
HinP1I	GCGC	5 cut(s)	23, 62, 119, 197, 245
HinfI	GANTC	2 cut(s)	74, 412
HpaII	CCGG	8 cut(s)	98, 242, 248, 354, 360, 416, 428, 488
Hpy166II	GTNNAC	1 cut(s)	78
Hpy188I	TCNGA	3 cut(s)	279, 384, 405
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	1 cut(s)	78
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	245, 382
HpyCH4IV	ACGT	1 cut(s)	370
HpyF10VI	GCNNNNNNNGC	6 cut(s)	20, 118, 205, 219, 280, 437
HpySE526I	ACGT	1 cut(s)	370
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	181, 288
HspAI	GCGC	5 cut(s)	23, 62, 119, 197, 245
KasI	GGCGCC	1 cut(s)	244
KroI	GCCGGC	1 cut(s)	97
KroNI	GCCGGC	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	88, 310
LmnI	GCTCC	4 cut(s)	254, 330, 430, 490
Lsp1109I	GCAGC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	306, 444
MaeII	ACGT	1 cut(s)	370
MalI	GATC	2 cut(s)	90, 312
MbiI	CCGCTC	2 cut(s)	147, 325
MboI	GATC	2 cut(s)	88, 310
MboII	GAAGA	1 cut(s)	397
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	310
MhlI	GDGCHC	3 cut(s)	156, 344, 442
MluCI	AATT	1 cut(s)	330
Mly113I	GGCGCC	1 cut(s)	245
MlyI	GAGTC	2 cut(s)	83, 406
MmeI	TCCRAC	1 cut(s)	428
MroNI	GCCGGC	1 cut(s)	97
MseI	TTAA	1 cut(s)	27
MspI	CCGG	8 cut(s)	98, 242, 248, 354, 360, 416, 428, 488
MspR9I	CCNGG	2 cut(s)	242, 355
MunI	CAATTG	1 cut(s)	330
MvnI	CGCG	2 cut(s)	62, 197
MwoI	GCNNNNNNNGC	6 cut(s)	20, 118, 205, 219, 280, 437
NaeI	GCCGGC	1 cut(s)	99
NarI	GGCGCC	1 cut(s)	245
NciI	CCSGG	2 cut(s)	242, 355
NdeII	GATC	2 cut(s)	88, 310
NgoMIV	GCCGGC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	181, 288
NlaIV	GGNNCC	8 cut(s)	212, 240, 246, 256, 312, 358, 426, 439
PcsI	WCGNNNNNNNCGW	1 cut(s)	428
PdiI	GCCGGC	1 cut(s)	99
PkrI	GCNGC	8 cut(s)	13, 66, 96, 149, 201, 221, 259, 377
PleI	GAGTC	2 cut(s)	82, 406
PluTI	GGCGCC	1 cut(s)	248
PmaCI	CACGTG	1 cut(s)	371
PmlI	CACGTG	1 cut(s)	371
PpsI	GAGTC	2 cut(s)	82, 406
Ppu21I	YACGTR	1 cut(s)	371
PpuMI	RGGWCCY	1 cut(s)	238
Psp124BI	GAGCTC	2 cut(s)	156, 344
Psp5II	RGGWCCY	1 cut(s)	238
PspCI	CACGTG	1 cut(s)	371
PspN4I	GGNNCC	8 cut(s)	212, 240, 246, 256, 312, 358, 426, 439
PspPI	GGNCC	3 cut(s)	211, 238, 357
PspPPI	RGGWCCY	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	310
SacI	GAGCTC	2 cut(s)	156, 344
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	8 cut(s)	12, 65, 95, 148, 200, 220, 258, 376
Sau3AI	GATC	2 cut(s)	88, 310
Sau96I	GGNCC	3 cut(s)	211, 238, 357
SchI	GAGTC	2 cut(s)	83, 406
ScrFI	CCNGG	2 cut(s)	242, 355
SduI	GDGCHC	3 cut(s)	156, 344, 442
SfoI	GGCGCC	1 cut(s)	246
SinI	GGWCC	2 cut(s)	238, 357
Sse9I	AATT	1 cut(s)	330
SspDI	GGCGCC	1 cut(s)	244
SspMI	CTAG	2 cut(s)	306, 444
SstI	GAGCTC	2 cut(s)	156, 344
StyD4I	CCNGG	2 cut(s)	240, 353
StyI	CCWWGG	2 cut(s)	234, 305
TaiI	ACGT	1 cut(s)	373
TaqI	TCGA	4 cut(s)	44, 72, 344, 410
TasI	AATT	1 cut(s)	330
TauI	GCSGC	7 cut(s)	14, 97, 150, 202, 222, 260, 378
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	152, 194
TspGWI	ACGGA	2 cut(s)	303, 469
TspRI	CASTG	1 cut(s)	468
VpaK11BI	GGWCC	2 cut(s)	238, 357
XmaJI	CCTAGG	1 cut(s)	305
XspI	CTAG	2 cut(s)	306, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.