Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

32023263 .. 32024596

Gene Structure 1334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTCATCGATCCGCGTGACTCCTAACAACTCATTTTCCACCGTCAGATTGCACACACAACCGCCGTCCCTGACCGTCAGATCGCACTCCGGTGGTCATCCTGCGCCTTTAGAAAACCCACCTTTTAAATTCTTGCTCTCTTTCATTTCCTTCTCTGCATCTCACTCTCCTCCCAGACTCAAGTCTTCGTTTACAGAGAGAGCTCTCATGGCCACCACTGAGGTATTCAACGACCCACCGGCACCGGCGAATCCAGCTCCTCCGGCTCTCCCAGACTACCCTAAGATGATTATGGAGGCGATTGAGGGGCTGAATGAGACCGGAGGCTCGAACAAGACCTCAATCGCGCAGCAAATCGAGTCCACTCACACCACCGATCTGCCGCCGGCTCACGCCACGCTTCTAGCGCAGCACCTGGAGAAGATGAAGCAGAGCGGCGAGCTCGCTTTTGTGAAGAACAACTACATGAAGCCTGACCCCAACGCGCCGCCCAAGCGCGGCCGTGGCCGTCCTCCTAAGCCGAAGGTCCCGGGGGCTGAAGGAGCTGCTGCGGTGGTTTCCTCGCCTCCGAGGCCACGTGGCAGGCCTCCCAAGGCTAAGGATCCGTTTTTCCCGACTCCGATTGTCCAGAGCTCGACCTCGGGAGGAGGGTCAGGCCGGCCACGTGGCCGTCCTCCGAAGAAGGCCAAGACTGCTCCGACCTCGACTCCGGCTGCTGCTCCGGCGAGTGGTGCTCCTAGAGGGAGAGGCAGGCCACCGAAAGTGAAGCCCTCCGTGGCTCCGGTGGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

265

Amino Acids

27.74

Weight (kDa)

10.77

Isoelectric Point (pI)

60.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	91 - 153	4.5e-08	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	241
AccBSI	CCGCTC	1 cut(s)	435
AccII	CGCG	4 cut(s)	15, 347, 485, 498
AciI	CCGC	7 cut(s)	13, 62, 383, 435, 488, 498, 551
AclWI	GGATC	3 cut(s)	4, 596, 609
AcoI	YGGCCR	5 cut(s)	210, 499, 505, 659, 667
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	558
AcvI	CACGTG	2 cut(s)	578, 665
AfiI	CCNNNNNNNGG	2 cut(s)	497, 728
AgsI	TTSAA	1 cut(s)	229
AjnI	CCWGG	1 cut(s)	414
AleI	CACNNNNGTG	1 cut(s)	90
AluBI	AGCT	5 cut(s)	203, 257, 442, 545, 633
AluI	AGCT	5 cut(s)	203, 257, 442, 545, 633
Alw21I	GWGCWC	4 cut(s)	205, 444, 635, 736
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	3 cut(s)	4, 596, 609
AlwNI	CAGNNNCTG	1 cut(s)	415
Ama87I	CYCGRG	2 cut(s)	529, 640
ApeKI	GCWGC	6 cut(s)	349, 409, 545, 548, 713, 716
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	5 cut(s)	106, 349, 409, 487, 498
AspS9I	GGNCC	1 cut(s)	526
AsuC2I	CCSGG	2 cut(s)	530, 531
AvaI	CYCGRG	2 cut(s)	529, 640
AvaII	GGWCC	1 cut(s)	526
BalI	TGGCCA	1 cut(s)	212
BamHI	GGATCC	1 cut(s)	601
BanI	GGYRCC	1 cut(s)	241
BanII	GRGCYC	3 cut(s)	205, 444, 635
BarI	GAAGNNNNNNTAC	2 cut(s)	446, 478
BbrPI	CACGTG	2 cut(s)	578, 665
BbsI	GAAGAC	1 cut(s)	177
Bbv12I	GWGCWC	4 cut(s)	205, 444, 635, 736
BbvI	GCAGC	6 cut(s)	361, 421, 532, 535, 700, 703
BceAI	ACGGC	4 cut(s)	49, 486, 492, 654
BciT130I	CCWGG	1 cut(s)	416
BcnI	CCSGG	2 cut(s)	530, 531
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	2 cut(s)	404, 738
BglI	GCCNNNNNGGC	1 cut(s)	571
Bme1390I	CCNGG	3 cut(s)	416, 530, 531
Bme18I	GGWCC	1 cut(s)	526
BmeT110I	CYCGRG	2 cut(s)	529, 640
BmgT120I	GGNCC	1 cut(s)	526
BmiI	GGNNCC	4 cut(s)	243, 528, 603, 780
BmrFI	CCNGG	3 cut(s)	416, 530, 531
BmsI	GCATC	1 cut(s)	167
BoxI	GACNNNNGTC	1 cut(s)	181
BpiI	GAAGAC	1 cut(s)	177
BplI	GAGNNNNNCTC	2 cut(s)	718, 750
BpmI	CTGGAG	1 cut(s)	437
Bpu10I	CCTNAGC	2 cut(s)	516, 597
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	2 cut(s)	530, 531
Bsa29I	ATCGAT	1 cut(s)	8
BsaAI	YACGTR	2 cut(s)	578, 665
BsaI	GGTCTC	1 cut(s)	311
BsaJI	CCNNGG	7 cut(s)	502, 529, 530, 569, 591, 639, 774
BsaWI	WCCGGW	3 cut(s)	89, 320, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	691, 721
Bsc4I	CCNNNNNNNGG	2 cut(s)	497, 728
Bse118I	RCCGGY	4 cut(s)	238, 244, 385, 657
BseBI	CCWGG	1 cut(s)	416
BseCI	ATCGAT	1 cut(s)	8
BseDI	CCNNGG	7 cut(s)	502, 529, 530, 569, 591, 639, 774
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	497, 728
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	3 cut(s)	159, 249, 660
BseX3I	CGGCCG	1 cut(s)	499
BseXI	GCAGC	6 cut(s)	361, 421, 532, 535, 700, 703
Bsh1236I	CGCG	4 cut(s)	15, 347, 485, 498
Bsh1285I	CGRYCG	1 cut(s)	502
BshNI	GGYRCC	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	502
BsiHKAI	GWGCWC	4 cut(s)	205, 444, 635, 736
BsiHKCI	CYCGRG	2 cut(s)	529, 640
BslFI	GGGAC	2 cut(s)	52, 512
BslI	CCNNNNNNNGG	2 cut(s)	497, 728
BsmAI	GTCTC	1 cut(s)	311
BsmFI	GGGAC	2 cut(s)	52, 512
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	2 cut(s)	529, 640
Bsp1286I	GDGCHC	4 cut(s)	205, 444, 635, 736
Bsp143I	GATC	4 cut(s)	9, 80, 376, 601
BspACI	CCGC	7 cut(s)	13, 62, 383, 435, 488, 498, 551
BspCNI	CTCAG	1 cut(s)	211
BspDI	ATCGAT	1 cut(s)	8
BspFNI	CGCG	4 cut(s)	15, 347, 485, 498
BspLI	GGNNCC	4 cut(s)	243, 528, 603, 780
BspPI	GGATC	3 cut(s)	4, 596, 609
BspT107I	GGYRCC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	311
BsrBI	CCGCTC	1 cut(s)	435
BsrFI	RCCGGY	4 cut(s)	238, 244, 385, 657
BssAI	RCCGGY	4 cut(s)	238, 244, 385, 657
BssECI	CCNNGG	7 cut(s)	502, 529, 530, 569, 591, 639, 774
BssMI	GATC	4 cut(s)	9, 80, 376, 601
BssT1I	CCWWGG	1 cut(s)	591
Bst2UI	CCWGG	1 cut(s)	416
Bst4CI	ACNGT	2 cut(s)	43, 76
BstBAI	YACGTR	2 cut(s)	578, 665
BstC8I	GCNNGC	6 cut(s)	387, 440, 444, 584, 659, 752
BstDEI	CTNAG	4 cut(s)	219, 282, 516, 597
BstDSI	CCRYGG	2 cut(s)	502, 774
BstF5I	GGATG	1 cut(s)	97
BstFNI	CGCG	4 cut(s)	15, 347, 485, 498
BstHHI	GCGC	5 cut(s)	106, 349, 409, 487, 498
BstKTI	GATC	4 cut(s)	12, 83, 379, 604
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	4 cut(s)	9, 80, 376, 601
BstMCI	CGRYCG	1 cut(s)	502
BstNI	CCWGG	1 cut(s)	416
BstPAI	GACNNNNGTC	1 cut(s)	181
BstSCI	CCNGG	3 cut(s)	414, 528, 529
BstUI	CGCG	4 cut(s)	15, 347, 485, 498
BstV1I	GCAGC	6 cut(s)	361, 421, 532, 535, 700, 703
BstV2I	GAAGAC	1 cut(s)	177
BstX2I	RGATCY	1 cut(s)	601
BstYI	RGATCY	1 cut(s)	601
BstZI	CGGCCG	1 cut(s)	499
Bsu15I	ATCGAT	1 cut(s)	8
BsuTUI	ATCGAT	1 cut(s)	8
BtgI	CCRYGG	2 cut(s)	502, 774
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	216
Cac8I	GCNNGC	6 cut(s)	387, 440, 444, 584, 659, 752
CaiI	CAGNNNCTG	1 cut(s)	415
CfoI	GCGC	5 cut(s)	106, 349, 409, 487, 498
Cfr10I	RCCGGY	4 cut(s)	238, 244, 385, 657
Cfr13I	GGNCC	1 cut(s)	526
Cfr9I	CCCGGG	1 cut(s)	529
ClaI	ATCGAT	1 cut(s)	8
CviAII	CATG	2 cut(s)	208, 466
DdeI	CTNAG	4 cut(s)	219, 282, 516, 597
DpnI	GATC	4 cut(s)	11, 82, 378, 603
DpnII	GATC	4 cut(s)	9, 80, 376, 601
DraI	TTTAAA	1 cut(s)	127
EaeI	YGGCCR	5 cut(s)	210, 499, 505, 659, 667
EagI	CGGCCG	1 cut(s)	499
Ecl136II	GAGCTC	3 cut(s)	203, 442, 633
EclXI	CGGCCG	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	591
Eco147I	AGGCCT	1 cut(s)	586
Eco24I	GRGCYC	3 cut(s)	205, 444, 635
Eco31I	GGTCTC	1 cut(s)	311
Eco47I	GGWCC	1 cut(s)	526
Eco52I	CGGCCG	1 cut(s)	499
Eco53kI	GAGCTC	3 cut(s)	203, 442, 633
Eco57I	CTGAAG	1 cut(s)	558
Eco72I	CACGTG	2 cut(s)	578, 665
Eco88I	CYCGRG	2 cut(s)	529, 640
EcoICRI	GAGCTC	3 cut(s)	203, 442, 633
EcoO109I	RGGNCCY	1 cut(s)	526
EcoRII	CCWGG	1 cut(s)	414
EcoT14I	CCWWGG	1 cut(s)	591
EcoT38I	GRGCYC	3 cut(s)	205, 444, 635
ErhI	CCWWGG	1 cut(s)	591
FaeI	CATG	2 cut(s)	211, 469
FaiI	YATR	3 cut(s)	209, 293, 467
FaqI	GGGAC	2 cut(s)	52, 512
FatI	CATG	2 cut(s)	207, 465
FokI	GGATG	1 cut(s)	84
FriOI	GRGCYC	3 cut(s)	205, 444, 635
FseI	GGCCGGCC	1 cut(s)	661
FspBI	CTAG	2 cut(s)	404, 738
GlaI	GCGC	5 cut(s)	105, 348, 408, 486, 497
GsuI	CTGGAG	1 cut(s)	437
HhaI	GCGC	5 cut(s)	106, 349, 409, 487, 498
Hin1II	CATG	2 cut(s)	211, 469
Hin6I	GCGC	5 cut(s)	104, 347, 407, 485, 496
HinP1I	GCGC	5 cut(s)	104, 347, 407, 485, 496
HinfI	GANTC	6 cut(s)	19, 177, 250, 359, 616, 706
Hpy166II	GTNNAC	2 cut(s)	192, 363
Hpy188I	TCNGA	6 cut(s)	47, 80, 570, 621, 678, 699
Hpy188III	TCNNGA	3 cut(s)	613, 628, 642
Hpy8I	GTNNAC	2 cut(s)	192, 363
HpyAV	CCTTC	4 cut(s)	160, 517, 533, 676
HpyCH4III	ACNGT	2 cut(s)	43, 76
HpyCH4IV	ACGT	2 cut(s)	577, 664
HpyCH4V	TGCA	2 cut(s)	52, 158
HpyF3I	CTNAG	4 cut(s)	219, 282, 516, 597
HpySE526I	ACGT	2 cut(s)	577, 664
Hsp92II	CATG	2 cut(s)	211, 469
HspAI	GCGC	5 cut(s)	104, 347, 407, 485, 496
KroI	GCCGGC	2 cut(s)	385, 657
KroNI	GCCGGC	2 cut(s)	387, 659
Kzo9I	GATC	4 cut(s)	9, 80, 376, 601
LmnI	GCTCC	6 cut(s)	262, 542, 700, 724, 739, 784
Lsp1109I	GCAGC	6 cut(s)	361, 421, 532, 535, 700, 703
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	2 cut(s)	404, 738
MaeII	ACGT	2 cut(s)	577, 664
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	4 cut(s)	11, 82, 378, 603
MbiI	CCGCTC	1 cut(s)	435
MboI	GATC	4 cut(s)	9, 80, 376, 601
MboII	GAAGA	4 cut(s)	177, 433, 466, 691
MflI	RGATCY	1 cut(s)	601
MhlI	GDGCHC	4 cut(s)	205, 444, 635, 736
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	5 cut(s)	13, 171, 368, 610, 700
MmeI	TCCRAC	1 cut(s)	722
Mox20I	TGGCCA	1 cut(s)	212
MroNI	GCCGGC	2 cut(s)	385, 657
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	1 cut(s)	126
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	212
MspR9I	CCNGG	3 cut(s)	416, 530, 531
MvaI	CCWGG	1 cut(s)	416
MvnI	CGCG	4 cut(s)	15, 347, 485, 498
NaeI	GCCGGC	2 cut(s)	387, 659
NciI	CCSGG	2 cut(s)	530, 531
NdeII	GATC	4 cut(s)	9, 80, 376, 601
NgoMIV	GCCGGC	2 cut(s)	385, 657
NlaIII	CATG	2 cut(s)	211, 469
NlaIV	GGNNCC	4 cut(s)	243, 528, 603, 780
NmuCI	GTSAC	1 cut(s)	16
OliI	CACNNNNGTG	1 cut(s)	90
PceI	AGGCCT	1 cut(s)	586
PdiI	GCCGGC	2 cut(s)	387, 659
PfeI	GAWTC	1 cut(s)	250
PleI	GAGTC	5 cut(s)	13, 171, 367, 610, 700
PmaCI	CACGTG	2 cut(s)	578, 665
PmlI	CACGTG	2 cut(s)	578, 665
PpsI	GAGTC	5 cut(s)	13, 171, 367, 610, 700
Ppu21I	YACGTR	2 cut(s)	578, 665
PpuMI	RGGWCCY	1 cut(s)	526
PshAI	GACNNNNGTC	1 cut(s)	181
Psp124BI	GAGCTC	3 cut(s)	205, 444, 635
Psp5II	RGGWCCY	1 cut(s)	526
Psp6I	CCWGG	1 cut(s)	414
PspCI	CACGTG	2 cut(s)	578, 665
PspGI	CCWGG	1 cut(s)	414
PspN4I	GGNNCC	4 cut(s)	243, 528, 603, 780
PspPI	GGNCC	1 cut(s)	526
PspPPI	RGGWCCY	1 cut(s)	526
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	1 cut(s)	601
RigI	GGCCGGCC	1 cut(s)	661
RseI	CAYNNNNRTG	1 cut(s)	90
SacI	GAGCTC	3 cut(s)	205, 444, 635
SaqAI	TTAA	1 cut(s)	126
Sau3AI	GATC	4 cut(s)	9, 80, 376, 601
Sau96I	GGNCC	1 cut(s)	526
SchI	GAGTC	5 cut(s)	13, 171, 368, 610, 700
ScrFI	CCNGG	3 cut(s)	416, 530, 531
SduI	GDGCHC	4 cut(s)	205, 444, 635, 736
SfaNI	GCATC	1 cut(s)	167
SgrAI	CRCCGGYG	1 cut(s)	244
SinI	GGWCC	1 cut(s)	526
SmaI	CCCGGG	1 cut(s)	531
SmiMI	CAYNNNNRTG	1 cut(s)	90
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	128
SseBI	AGGCCT	1 cut(s)	586
SsiI	CCGC	7 cut(s)	13, 62, 383, 435, 488, 498, 551
SspMI	CTAG	2 cut(s)	404, 738
SstI	GAGCTC	3 cut(s)	205, 444, 635
StuI	AGGCCT	1 cut(s)	586
StyD4I	CCNGG	3 cut(s)	414, 528, 529
StyI	CCWWGG	1 cut(s)	591
TaaI	ACNGT	2 cut(s)	43, 76
TaiI	ACGT	2 cut(s)	580, 667
TaqI	TCGA	5 cut(s)	8, 329, 357, 635, 704
TasI	AATT	1 cut(s)	128
TauI	GCSGC	4 cut(s)	385, 438, 490, 501
TfiI	GAWTC	1 cut(s)	250
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	223
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	6 cut(s)	349, 409, 545, 548, 713, 716
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	133, 440, 482
TspGWI	ACGGA	2 cut(s)	594, 763
TspMI	CCCGGG	1 cut(s)	529
TspRI	CASTG	1 cut(s)	223
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	1 cut(s)	128
XmaI	CCCGGG	1 cut(s)	529
XspI	CTAG	2 cut(s)	404, 738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.