Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

5138116 .. 5139467

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G14900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCCTTCGATCTCCACCATGGCTCAGCTTCAGATACGCATTCATCAGAACTTCCGTCGTTTTCTCTCCCACCTTATCCTCAGATGATAATGGAAGCGATTGAGTCCTTGAACGATAAGAACGGCTGCAACAAAACGACGATTGCTAAGCACATCGAGTCGACTCAACAAACTCTACCGCCGTCACACATGACGCTGCTCAGCTACCATCTCAACCAGATGAAGAAAACCGGTCAGCTAATCATGGTGAAGAACAATTATATGAAACCAGATCCAGATGCTCCTCCTAAGCGTGGTCGTGGCCGTCCTCCGAAGCAGAAGACTCAGGCCGAATCTGACGCCGCTGCTGCTGCTGTTGTTGCTGCCACCGTCGTCTCTACAGATCCGCCTAGATCTCGTGGCCGTCCACCGAAGCCGAAAGATCCATCGGAGCCTCCCCAGGAGAAGGTCATTACCGGATCTGGAAGGCCACGAGGACGACCACCGAAGAGACCGAGAACAGATTCGGAGACGGTTGCTGCGCCGGAACCGGCAGCTCAGGCGACAGGTGAGCGTAGGGGACGTGGGAGACCTCCGAAGGTGAAGCCGACGGTGGTTGCTCCGGTTGGGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

204

Amino Acids

22.01

Weight (kDa)

9.96

Isoelectric Point (pI)

58.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	24 - 85	2.7e-10	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	161
AciI	CCGC	3 cut(s)	179, 342, 386
AclWI	GGATC	4 cut(s)	266, 377, 416, 466
AcoI	YGGCCR	2 cut(s)	301, 400
AcuI	CTGAAG	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	339
AfiI	CCNNNNNNNGG	2 cut(s)	293, 445
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	563
AjnI	CCWGG	1 cut(s)	438
AluBI	AGCT	4 cut(s)	29, 204, 238, 536
AluI	AGCT	4 cut(s)	29, 204, 238, 536
Alw26I	GTCTC	4 cut(s)	379, 484, 503, 562
AlwI	GGATC	4 cut(s)	266, 377, 416, 466
AoxI	GGCC	5 cut(s)	3, 301, 327, 400, 467
ApeKI	GCWGC	8 cut(s)	126, 196, 344, 347, 350, 362, 518, 533
AsiGI	ACCGGT	1 cut(s)	230
Asp700I	GAANNNNTTC	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	523
AsuHPI	GGTGA	3 cut(s)	259, 560, 592
BauI	CACGAG	2 cut(s)	396, 471
BbsI	GAAGAC	1 cut(s)	326
BbvI	GCAGC	8 cut(s)	113, 183, 331, 334, 337, 349, 505, 545
BccI	CCATC	2 cut(s)	216, 433
BceAI	ACGGC	4 cut(s)	139, 166, 288, 387
BciT130I	CCWGG	1 cut(s)	440
BcoDI	GTCTC	4 cut(s)	379, 484, 503, 562
BfaI	CTAG	1 cut(s)	390
BfmI	CTRYAG	1 cut(s)	378
BglII	AGATCT	1 cut(s)	392
BisI	GCNGC	9 cut(s)	127, 197, 342, 345, 348, 351, 363, 519, 534
BlpI	GCTNAGC	3 cut(s)	25, 147, 200
BlsI	GCNGC	9 cut(s)	128, 198, 343, 346, 349, 352, 364, 520, 535
Bme1390I	CCNGG	1 cut(s)	440
BmgBI	CACGTC	1 cut(s)	563
BmiI	GGNNCC	2 cut(s)	432, 528
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	268
BpiI	GAAGAC	1 cut(s)	326
Bpu10I	CCTNAGC	2 cut(s)	288, 537
Bpu1102I	GCTNAGC	3 cut(s)	25, 147, 200
BsaHI	GRCGYC	1 cut(s)	339
BsaI	GGTCTC	2 cut(s)	484, 562
BsaJI	CCNNGG	2 cut(s)	19, 438
BsaWI	WCCGGW	3 cut(s)	230, 455, 601
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 445
Bse118I	RCCGGY	2 cut(s)	230, 529
BseBI	CCWGG	1 cut(s)	440
BseDI	CCNNGG	2 cut(s)	19, 438
BseLI	CCNNNNNNNGG	2 cut(s)	293, 445
BseMII	CTCAG	5 cut(s)	39, 95, 214, 338, 551
BseRI	GAGGAG	1 cut(s)	273
BseXI	GCAGC	8 cut(s)	113, 183, 331, 334, 337, 349, 505, 545
BshFI	GGCC	5 cut(s)	5, 303, 329, 402, 469
BshTI	ACCGGT	1 cut(s)	230
BsiSI	CCGG	5 cut(s)	231, 456, 524, 530, 602
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	2 cut(s)	293, 445
BsmAI	GTCTC	4 cut(s)	379, 484, 503, 562
BsmBI	CGTCTC	2 cut(s)	379, 503
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	40
BsnI	GGCC	5 cut(s)	5, 303, 329, 402, 469
Bso31I	GGTCTC	2 cut(s)	484, 562
Bsp143I	GATC	6 cut(s)	10, 271, 382, 392, 421, 458
Bsp1720I	GCTNAGC	3 cut(s)	25, 147, 200
Bsp19I	CCATGG	1 cut(s)	19
BspACI	CCGC	3 cut(s)	179, 342, 386
BspANI	GGCC	5 cut(s)	5, 303, 329, 402, 469
BspCNI	CTCAG	5 cut(s)	38, 94, 213, 337, 550
BspLI	GGNNCC	2 cut(s)	432, 528
BspPI	GGATC	4 cut(s)	266, 377, 416, 466
BspTNI	GGTCTC	2 cut(s)	484, 562
BsrFI	RCCGGY	2 cut(s)	230, 529
BssAI	RCCGGY	2 cut(s)	230, 529
BssECI	CCNNGG	2 cut(s)	19, 438
BssMI	GATC	6 cut(s)	10, 271, 382, 392, 421, 458
BssNI	GRCGYC	1 cut(s)	339
BssSI	CACGAG	2 cut(s)	396, 471
BssT1I	CCWWGG	1 cut(s)	19
Bst2BI	CACGAG	2 cut(s)	396, 471
Bst2UI	CCWGG	1 cut(s)	440
Bst4CI	ACNGT	3 cut(s)	370, 514, 592
Bst6I	CTCTTC	1 cut(s)	482
BstACI	GRCGYC	1 cut(s)	339
BstDEI	CTNAG	7 cut(s)	25, 81, 147, 200, 288, 324, 537
BstDSI	CCRYGG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	523
BstKTI	GATC	6 cut(s)	13, 274, 385, 395, 424, 461
BstMAI	GTCTC	4 cut(s)	379, 484, 503, 562
BstMBI	GATC	6 cut(s)	10, 271, 382, 392, 421, 458
BstMWI	GCNNNNNNNGC	4 cut(s)	347, 350, 359, 539
BstNI	CCWGG	1 cut(s)	440
BstSCI	CCNGG	1 cut(s)	438
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	8 cut(s)	113, 183, 331, 334, 337, 349, 505, 545
BstV2I	GAAGAC	1 cut(s)	326
BstX2I	RGATCY	5 cut(s)	271, 382, 392, 421, 458
BstYI	RGATCY	5 cut(s)	271, 382, 392, 421, 458
BsuRI	GGCC	5 cut(s)	5, 303, 329, 402, 469
BtgI	CCRYGG	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	563
CfoI	GCGC	1 cut(s)	523
Cfr10I	RCCGGY	2 cut(s)	230, 529
CseI	GACGC	2 cut(s)	202, 347
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	3 cut(s)	20, 190, 244
DdeI	CTNAG	7 cut(s)	25, 81, 147, 200, 288, 324, 537
DpnI	GATC	6 cut(s)	12, 273, 384, 394, 423, 460
DpnII	GATC	6 cut(s)	10, 271, 382, 392, 421, 458
EaeI	YGGCCR	2 cut(s)	301, 400
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
EciI	GGCGGA	1 cut(s)	375
Eco130I	CCWWGG	1 cut(s)	19
Eco31I	GGTCTC	2 cut(s)	484, 562
Eco57I	CTGAAG	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	438
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	2 cut(s)	379, 503
FaeI	CATG	3 cut(s)	23, 193, 247
FaiI	YATR	5 cut(s)	21, 191, 245, 261, 263
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	3 cut(s)	19, 189, 243
FblI	GTMKAC	1 cut(s)	161
Fnu4HI	GCNGC	9 cut(s)	127, 197, 342, 345, 348, 351, 363, 519, 534
Fsp4HI	GCNGC	9 cut(s)	127, 197, 342, 345, 348, 351, 363, 519, 534
FspBI	CTAG	1 cut(s)	390
GlaI	GCGC	1 cut(s)	522
GluI	GCNGC	9 cut(s)	127, 197, 342, 345, 348, 351, 363, 519, 534
HaeIII	GGCC	5 cut(s)	5, 303, 329, 402, 469
HapII	CCGG	5 cut(s)	231, 456, 524, 530, 602
HgaI	GACGC	2 cut(s)	202, 347
HhaI	GCGC	1 cut(s)	523
Hin1I	GRCGYC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	23, 193, 247
Hin6I	GCGC	1 cut(s)	521
HinP1I	GCGC	1 cut(s)	521
HincII	GTYRAC	1 cut(s)	162
HindII	GTYRAC	1 cut(s)	162
HinfI	GANTC	6 cut(s)	104, 158, 163, 322, 332, 503
HpaII	CCGG	5 cut(s)	231, 456, 524, 530, 602
HphI	GGTGA	3 cut(s)	259, 560, 592
Hpy166II	GTNNAC	2 cut(s)	162, 407
Hpy188I	TCNGA	8 cut(s)	34, 49, 84, 312, 337, 430, 508, 576
Hpy188III	TCNNGA	2 cut(s)	275, 462
Hpy8I	GTNNAC	2 cut(s)	162, 407
Hpy99I	CGWCG	4 cut(s)	61, 142, 374, 592
HpyAV	CCTTC	4 cut(s)	16, 439, 459, 571
HpyCH4III	ACNGT	3 cut(s)	370, 514, 592
HpyCH4IV	ACGT	1 cut(s)	562
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	4 cut(s)	347, 350, 359, 539
HpyF3I	CTNAG	7 cut(s)	25, 81, 147, 200, 288, 324, 537
HpySE526I	ACGT	1 cut(s)	562
Hsp92I	GRCGYC	1 cut(s)	339
Hsp92II	CATG	3 cut(s)	23, 193, 247
HspAI	GCGC	1 cut(s)	521
Kzo9I	GATC	6 cut(s)	10, 271, 382, 392, 421, 458
LmnI	GCTCC	3 cut(s)	286, 430, 604
Lsp1109I	GCAGC	8 cut(s)	113, 183, 331, 334, 337, 349, 505, 545
LweI	GCATC	1 cut(s)	268
MaeI	CTAG	1 cut(s)	390
MaeII	ACGT	1 cut(s)	562
MaeIII	GTNAC	1 cut(s)	183
MalI	GATC	6 cut(s)	12, 273, 384, 394, 423, 460
MboI	GATC	6 cut(s)	10, 271, 382, 392, 421, 458
MboII	GAAGA	4 cut(s)	235, 262, 331, 499
MflI	RGATCY	5 cut(s)	271, 382, 392, 421, 458
MluCI	AATT	1 cut(s)	256
MlyI	GAGTC	4 cut(s)	113, 157, 167, 316
MnlI	CCTC	6 cut(s)	90, 294, 318, 444, 467, 582
MroXI	GAANNNNTTC	1 cut(s)	502
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	5 cut(s)	231, 456, 524, 530, 602
MspR9I	CCNGG	1 cut(s)	440
Mva1269I	GAATGC	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	440
MwoI	GCNNNNNNNGC	4 cut(s)	347, 350, 359, 539
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	6 cut(s)	10, 271, 382, 392, 421, 458
NlaIII	CATG	3 cut(s)	23, 193, 247
NlaIV	GGNNCC	2 cut(s)	432, 528
NmuCI	GTSAC	1 cut(s)	183
PctI	GAATGC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	332, 503
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	9 cut(s)	128, 198, 343, 346, 349, 352, 364, 520, 535
PleI	GAGTC	4 cut(s)	112, 157, 166, 316
PpsI	GAGTC	4 cut(s)	112, 157, 166, 316
Psp6I	CCWGG	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	438
PspN4I	GGNNCC	2 cut(s)	432, 528
PsuI	RGATCY	5 cut(s)	271, 382, 392, 421, 458
SalI	GTCGAC	1 cut(s)	160
SatI	GCNGC	9 cut(s)	127, 197, 342, 345, 348, 351, 363, 519, 534
Sau3AI	GATC	6 cut(s)	10, 271, 382, 392, 421, 458
SchI	GAGTC	4 cut(s)	113, 157, 167, 316
ScrFI	CCNGG	1 cut(s)	440
SfaNI	GCATC	1 cut(s)	268
SfcI	CTRYAG	1 cut(s)	378
Sse9I	AATT	1 cut(s)	256
SsiI	CCGC	3 cut(s)	179, 342, 386
SspMI	CTAG	1 cut(s)	390
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	19
TaaI	ACNGT	3 cut(s)	370, 514, 592
TaiI	ACGT	1 cut(s)	565
TaqI	TCGA	3 cut(s)	9, 156, 161
TaqII	GACCGA	1 cut(s)	508
TasI	AATT	1 cut(s)	256
TauI	GCSGC	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	332, 503
TseFI	GTSAC	1 cut(s)	183
TseI	GCWGC	8 cut(s)	126, 196, 344, 347, 350, 362, 518, 533
Tsp45I	GTSAC	1 cut(s)	183
TspDTI	ATGAA	3 cut(s)	33, 236, 278
TspGWI	ACGGA	1 cut(s)	45
XmiI	GTMKAC	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	502
XspI	CTAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.