Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Forward (+)

21093213 .. 21094770

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g28760.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCGACTGAAGAGGTCAAGAAACCCCCATCCCTTCCTCCTTACCCTGAGATGATTCTGAAGGCCATTGAAGGTTTGAATGAGAGTAATGGCTCAAACAAATCCTCAATATCAAGATACATTGAATCAACTTATGGGGAATTGCCTGCCGGGCACTCTGCACTACTGTCTGATCACCTCAGCAAAATGAAAGATAGCGGTGAGCTGGTTTTCTGGAAAAACAACTACACAAAGGCAGACCCGAATGCACCACCGAGACGGGGACGTGGGAGGCCCCCAAAACCCAAGGATCCAGATCAGGTACAGGCTGCTGACTTGGCCTCTGGAAGGCCCAGGGGACGCCCACCTAAGGATCCGGATGCGCCCCCAAGACCTCCCAAGGTCAAGGCATCTCCAGGAAGTGAGAAACCAAGAGGACGACCAAGGAAGATGGCTCGCCCCACTGGAGGTTTAAGTGGCTCGACAACCACAACAAACTCGGTGACTGGGAGGCCGAGGGGTAGACCTCCAAAGGTGAAGGATTCATTGACTGAAGTGAGCATTCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0080050 GO:0097159 GO:1901363 GO:2000014 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

184

Amino Acids

19.77

Weight (kDa)

10.19

Isoelectric Point (pI)

50.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	13 - 73	2.1e-09	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	502
AccIII	TCCGGA	1 cut(s)	355
AciI	CCGC	1 cut(s)	198
AclWI	GGATC	4 cut(s)	284, 297, 347, 360
AcuI	CTGAAG	3 cut(s)	30, 80, 552
AcyI	GRCGYC	1 cut(s)	340
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	4 cut(s)	260, 327, 349, 446
AgsI	TTSAA	3 cut(s)	71, 79, 125
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	332, 394
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	250
AlwI	GGATC	4 cut(s)	284, 297, 347, 360
Aor13HI	TCCGGA	1 cut(s)	355
AoxI	GGCC	5 cut(s)	63, 272, 318, 329, 491
ApeKI	GCWGC	1 cut(s)	308
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	2 cut(s)	273, 330
AsuC2I	CCSGG	1 cut(s)	151
AsuHPI	GGTGA	4 cut(s)	167, 212, 493, 526
AxyI	CCTNAGG	1 cut(s)	348
BaeGI	GKGCMC	1 cut(s)	156
BamHI	GGATCC	2 cut(s)	289, 352
BbvCI	CCTCAGC	1 cut(s)	179
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	2 cut(s)	37, 424
BciT130I	CCWGG	2 cut(s)	334, 396
BclI	TGATCA	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	250
BglI	GCCNNNNNGGC	1 cut(s)	151
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme1390I	CCNGG	3 cut(s)	151, 334, 396
BmgBI	CACGTC	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	273, 330
BmiI	GGNNCC	3 cut(s)	275, 291, 354
BmrFI	CCNGG	3 cut(s)	151, 334, 396
BmrI	ACTGGG	1 cut(s)	495
BmsI	GCATC	2 cut(s)	349, 398
BmuI	ACTGGG	1 cut(s)	495
BpmI	CTGGAG	2 cut(s)	378, 465
Bpu10I	CCTNAGC	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	151
BsaBI	GATNNNNATC	1 cut(s)	294
BsaHI	GRCGYC	1 cut(s)	340
BsaJI	CCNNGG	6 cut(s)	285, 332, 333, 378, 422, 494
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 327, 349, 446
Bse1I	ACTGG	2 cut(s)	448, 490
Bse21I	CCTNAGG	1 cut(s)	348
Bse8I	GATNNNNATC	1 cut(s)	294
BseAI	TCCGGA	1 cut(s)	355
BseBI	CCWGG	2 cut(s)	334, 396
BseDI	CCNNGG	6 cut(s)	285, 332, 333, 378, 422, 494
BseGI	GGATG	2 cut(s)	29, 364
BseJI	GATNNNNATC	1 cut(s)	294
BseLI	CCNNNNNNNGG	4 cut(s)	260, 327, 349, 446
BseMII	CTCAG	2 cut(s)	39, 193
BseNI	ACTGG	2 cut(s)	448, 490
BseSI	GKGCMC	1 cut(s)	156
BseXI	GCAGC	1 cut(s)	295
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	5 cut(s)	65, 274, 320, 331, 493
BsiSI	CCGG	2 cut(s)	150, 356
BslFI	GGGAC	2 cut(s)	276, 351
BslI	CCNNNNNNNGG	4 cut(s)	260, 327, 349, 446
BsmAI	GTCTC	1 cut(s)	250
BsmBI	CGTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	276, 351
BsmI	GAATGC	2 cut(s)	250, 540
BsnI	GGCC	5 cut(s)	65, 274, 320, 331, 493
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp13I	TCCGGA	1 cut(s)	355
Bsp143I	GATC	4 cut(s)	172, 289, 295, 352
BspACI	CCGC	1 cut(s)	198
BspANI	GGCC	5 cut(s)	65, 274, 320, 331, 493
BspCNI	CTCAG	2 cut(s)	40, 192
BspEI	TCCGGA	1 cut(s)	355
BspLI	GGNNCC	3 cut(s)	275, 291, 354
BspPI	GGATC	4 cut(s)	284, 297, 347, 360
BsrI	ACTGG	2 cut(s)	448, 490
BssECI	CCNNGG	6 cut(s)	285, 332, 333, 378, 422, 494
BssMI	GATC	4 cut(s)	172, 289, 295, 352
BssNI	GRCGYC	1 cut(s)	340
BssT1I	CCWWGG	3 cut(s)	285, 378, 422
Bst2UI	CCWGG	2 cut(s)	334, 396
Bst4CI	ACNGT	1 cut(s)	168
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	147, 436
BstDEI	CTNAG	3 cut(s)	48, 179, 348
BstENI	CCTNNNNNAGG	1 cut(s)	325
BstF5I	GGATG	2 cut(s)	29, 364
BstHHI	GCGC	1 cut(s)	364
BstKTI	GATC	4 cut(s)	175, 292, 298, 355
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	4 cut(s)	172, 289, 295, 352
BstMWI	GCNNNNNNNGC	2 cut(s)	151, 317
BstNI	CCWGG	2 cut(s)	334, 396
BstSCI	CCNGG	3 cut(s)	149, 332, 394
BstSLI	GKGCMC	1 cut(s)	156
BstV1I	GCAGC	1 cut(s)	295
BstX2I	RGATCY	2 cut(s)	289, 352
BstYI	RGATCY	2 cut(s)	289, 352
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	5 cut(s)	65, 274, 320, 331, 493
BtrI	CACGTC	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	29, 364
BtsIMutI	CAGTG	1 cut(s)	441
Cac8I	GCNNGC	2 cut(s)	147, 436
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	2 cut(s)	273, 330
CseI	GACGC	1 cut(s)	348
Csp6I	GTAC	1 cut(s)	302
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	3 cut(s)	48, 179, 348
DpnI	GATC	4 cut(s)	174, 291, 297, 354
DpnII	GATC	4 cut(s)	172, 289, 295, 352
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco130I	CCWWGG	3 cut(s)	285, 378, 422
Eco57I	CTGAAG	3 cut(s)	30, 80, 552
Eco81I	CCTNAGG	1 cut(s)	348
EcoNI	CCTNNNNNAGG	1 cut(s)	325
EcoO109I	RGGNCCY	1 cut(s)	273
EcoRII	CCWGG	2 cut(s)	332, 394
EcoT14I	CCWWGG	3 cut(s)	285, 378, 422
ErhI	CCWWGG	3 cut(s)	285, 378, 422
Esp3I	CGTCTC	1 cut(s)	250
FaiI	YATR	1 cut(s)	135
FaqI	GGGAC	2 cut(s)	276, 351
FbaI	TGATCA	1 cut(s)	172
FblI	GTMKAC	1 cut(s)	502
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	2 cut(s)	16, 371
Fsp4HI	GCNGC	1 cut(s)	309
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	2 cut(s)	378, 465
HaeIII	GGCC	5 cut(s)	65, 274, 320, 331, 493
HapII	CCGG	2 cut(s)	150, 356
HgaI	GACGC	1 cut(s)	348
HhaI	GCGC	1 cut(s)	364
Hin1I	GRCGYC	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HinfI	GANTC	3 cut(s)	55, 125, 521
HpaII	CCGG	2 cut(s)	150, 356
HphI	GGTGA	4 cut(s)	167, 212, 493, 526
Hpy166II	GTNNAC	1 cut(s)	503
Hpy188I	TCNGA	2 cut(s)	60, 172
Hpy188III	TCNNGA	6 cut(s)	19, 114, 214, 293, 324, 356
Hpy8I	GTNNAC	1 cut(s)	503
HpyAV	CCTTC	5 cut(s)	44, 55, 65, 321, 511
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	161, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	151, 317
HpyF3I	CTNAG	3 cut(s)	48, 179, 348
HpySE526I	ACGT	1 cut(s)	265
Hsp92I	GRCGYC	1 cut(s)	340
HspAI	GCGC	1 cut(s)	362
Kpn2I	TCCGGA	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	172, 289, 295, 352
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	2 cut(s)	349, 398
MaeII	ACGT	1 cut(s)	265
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	4 cut(s)	174, 291, 297, 354
MboI	GATC	4 cut(s)	172, 289, 295, 352
MboII	GAAGA	2 cut(s)	23, 439
MflI	RGATCY	2 cut(s)	289, 352
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	1 cut(s)	140
MroI	TCCGGA	1 cut(s)	355
MseI	TTAA	1 cut(s)	452
MspI	CCGG	2 cut(s)	150, 356
MspR9I	CCNGG	3 cut(s)	151, 334, 396
Mva1269I	GAATGC	2 cut(s)	250, 540
MvaI	CCWGG	2 cut(s)	334, 396
MwoI	GCNNNNNNNGC	2 cut(s)	151, 317
NciI	CCSGG	1 cut(s)	151
NdeII	GATC	4 cut(s)	172, 289, 295, 352
NlaIV	GGNNCC	3 cut(s)	275, 291, 354
NmeAIII	GCCGAG	1 cut(s)	519
NmuCI	GTSAC	1 cut(s)	481
PasI	CCCWGGG	1 cut(s)	333
PctI	GAATGC	2 cut(s)	250, 540
PfeI	GAWTC	3 cut(s)	55, 125, 521
PfoI	TCCNGGA	1 cut(s)	394
PkrI	GCNGC	1 cut(s)	310
Psp6I	CCWGG	2 cut(s)	332, 394
PspGI	CCWGG	2 cut(s)	332, 394
PspN4I	GGNNCC	3 cut(s)	275, 291, 354
PspPI	GGNCC	2 cut(s)	273, 330
PsuI	RGATCY	2 cut(s)	289, 352
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	4 cut(s)	172, 289, 295, 352
Sau96I	GGNCC	2 cut(s)	273, 330
ScrFI	CCNGG	3 cut(s)	151, 334, 396
SduI	GDGCHC	1 cut(s)	156
SfaNI	GCATC	2 cut(s)	349, 398
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	198
StyD4I	CCNGG	3 cut(s)	149, 332, 394
StyI	CCWWGG	3 cut(s)	285, 378, 422
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	461
TasI	AATT	1 cut(s)	140
TfiI	GAWTC	3 cut(s)	55, 125, 521
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	1 cut(s)	308
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	2 cut(s)	203, 513
TspRI	CASTG	1 cut(s)	448
XagI	CCTNNNNNAGG	1 cut(s)	325
XmiI	GTMKAC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.