Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

61704682 .. 61705575

Gene Structure 894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G034710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTCATCGATCCGCGTGACCCGTGGTCACGCCTTTTCCACCGTTGGATTATACCACCAACGGCCGCCCCTAGCCGTCCGATCCCACTCCGGAGATCGTCTAGAAAACCCACCTTTTAAATTCTTCCTCTCTTTCACATCTTTCTCTTACACAGCTCTCATGGCCACCGAGGAGTCCAACGAGCAACCGCCACCGTCGCCGGCACCGCCTAATCCGGCTCCGTCCCTCCCTGAGTACCCGAAGATGATTATGGCGGCGATTGAGGCGCTTAATGAGAGCGAGGGGTCGAACAAGACCTCAATCGCGCAGCAAATCGAGTCCACCTACGGCGATCTGCCGCCGGCTCACGCCACGCTTCTGGCGCACCACCTCATCAAGATGAAGCAGAGCGGCGAGCTCGTTTTCGTCAAGAACAACTACATGAAGCCCGACCCCAACGCGCCGCCCAAGCGGGGCCGTGGCCGCCCGCCCAAGCCCAAGGTCCCGGCGCCGGAAGGAGCCGCCGTGGTCTCCTCGCCTCCGAGGCCACGTGGCAGACCTCCCAAGCCTAGGGATCCGTTTTTCCCGCTCCCAATTGCCAAGAGCTCGACATCCACCGGGTCCGGCAGGCCACGTGGCCGCCCTCCGAAGAAGGCCAAGACAAGTCCGACCTCGACTCCGGCTTCGGCTCCGGCGAGTGGTGCCCCTAGAGGTAGAGGCAGGCCACCGAAAGTCAAGCCCTCCGTAGCTCCGGTGGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

247

Amino Acids

26.36

Weight (kDa)

10.57

Isoelectric Point (pI)

67.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	77 - 138	3.6e-08	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	202, 487, 680
AccBSI	CCGCTC	2 cut(s)	390, 568
AccII	CGCG	3 cut(s)	15, 305, 440
AccIII	TCCGGA	1 cut(s)	89
AclWI	GGATC	4 cut(s)	4, 75, 548, 561
AcoI	YGGCCR	4 cut(s)	62, 162, 460, 616
AcsI	RAATTY	1 cut(s)	119
AcvI	CACGTG	2 cut(s)	530, 614
AcyI	GRCGYC	1 cut(s)	488
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	4 cut(s)	452, 490, 549, 677
AhdI	GACNNNNNGTC	1 cut(s)	24
AluBI	AGCT	4 cut(s)	155, 397, 585, 728
AluI	AGCT	4 cut(s)	155, 397, 585, 728
Alw21I	GWGCWC	2 cut(s)	399, 587
Alw26I	GTCTC	1 cut(s)	514
AlwI	GGATC	4 cut(s)	4, 75, 548, 561
Aor13HI	TCCGGA	1 cut(s)	89
AoxI	GGCC	9 cut(s)	62, 162, 454, 460, 524, 608, 616, 633, 701
ApeKI	GCWGC	1 cut(s)	307
ApoI	RAATTY	1 cut(s)	119
ArsI	GACNNNNNNTTYG	2 cut(s)	646, 678
AspA2I	CCTAGG	1 cut(s)	548
AspLEI	GCGC	5 cut(s)	268, 307, 364, 442, 490
AspS9I	GGNCC	3 cut(s)	454, 481, 600
AsuC2I	CCSGG	2 cut(s)	485, 598
AvaII	GGWCC	2 cut(s)	481, 600
AvrII	CCTAGG	1 cut(s)	548
BaeGI	GKGCMC	1 cut(s)	685
BalI	TGGCCA	1 cut(s)	164
BamHI	GGATCC	1 cut(s)	553
BanI	GGYRCC	3 cut(s)	202, 487, 680
BanII	GRGCYC	2 cut(s)	399, 587
BbrPI	CACGTG	2 cut(s)	530, 614
Bbv12I	GWGCWC	2 cut(s)	399, 587
BbvI	GCAGC	1 cut(s)	319
BceAI	ACGGC	5 cut(s)	59, 77, 343, 441, 488
BcnI	CCSGG	2 cut(s)	485, 598
BcoDI	GTCTC	1 cut(s)	514
BfaI	CTAG	4 cut(s)	71, 101, 549, 687
BfoI	RGCGCY	2 cut(s)	269, 491
BglI	GCCNNNNNGGC	1 cut(s)	523
BisI	GCNGC	9 cut(s)	65, 255, 308, 338, 391, 443, 463, 501, 619
BlnI	CCTAGG	1 cut(s)	548
BlsI	GCNGC	9 cut(s)	66, 256, 309, 339, 392, 444, 464, 502, 620
Bme1390I	CCNGG	2 cut(s)	485, 598
Bme18I	GGWCC	2 cut(s)	481, 600
BmeRI	GACNNNNNGTC	1 cut(s)	24
BmgT120I	GGNCC	3 cut(s)	454, 481, 600
BmrFI	CCNGG	2 cut(s)	485, 598
BpuMI	CCSGG	2 cut(s)	485, 598
Bsa29I	ATCGAT	1 cut(s)	8
BsaAI	YACGTR	2 cut(s)	530, 614
BsaHI	GRCGYC	1 cut(s)	488
BsaI	GGTCTC	1 cut(s)	514
BsaJI	CCNNGG	7 cut(s)	22, 168, 457, 477, 504, 521, 548
BsaWI	WCCGGW	2 cut(s)	89, 730
BsaXI	ACNNNNNCTCC	4 cut(s)	489, 519, 640, 670
Bsc4I	CCNNNNNNNGG	4 cut(s)	452, 490, 549, 677
Bse118I	RCCGGY	2 cut(s)	199, 340
BseAI	TCCGGA	1 cut(s)	89
BseCI	ATCGAT	1 cut(s)	8
BseDI	CCNNGG	7 cut(s)	22, 168, 457, 477, 504, 521, 548
BseGI	GGATG	1 cut(s)	590
BseLI	CCNNNNNNNGG	4 cut(s)	452, 490, 549, 677
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	185, 502
BseSI	GKGCMC	1 cut(s)	685
BseX3I	CGGCCG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	319
Bsh1236I	CGCG	3 cut(s)	15, 305, 440
Bsh1285I	CGRYCG	1 cut(s)	65
BshFI	GGCC	9 cut(s)	64, 164, 456, 462, 526, 610, 618, 635, 703
BshNI	GGYRCC	3 cut(s)	202, 487, 680
BshVI	ATCGAT	1 cut(s)	8
BsiEI	CGRYCG	1 cut(s)	65
BsiHKAI	GWGCWC	2 cut(s)	399, 587
BslFI	GGGAC	2 cut(s)	208, 467
BslI	CCNNNNNNNGG	4 cut(s)	452, 490, 549, 677
BsmAI	GTCTC	1 cut(s)	514
BsmFI	GGGAC	2 cut(s)	208, 467
BsnI	GGCC	9 cut(s)	64, 164, 456, 462, 526, 610, 618, 635, 703
Bso31I	GGTCTC	1 cut(s)	514
Bsp1286I	GDGCHC	3 cut(s)	399, 587, 685
Bsp13I	TCCGGA	1 cut(s)	89
Bsp143I	GATC	5 cut(s)	9, 80, 94, 331, 553
BspANI	GGCC	9 cut(s)	64, 164, 456, 462, 526, 610, 618, 635, 703
BspCNI	CTCAG	1 cut(s)	223
BspDI	ATCGAT	1 cut(s)	8
BspEI	TCCGGA	1 cut(s)	89
BspFNI	CGCG	3 cut(s)	15, 305, 440
BspPI	GGATC	4 cut(s)	4, 75, 548, 561
BspT107I	GGYRCC	3 cut(s)	202, 487, 680
BspTNI	GGTCTC	1 cut(s)	514
BsrBI	CCGCTC	2 cut(s)	390, 568
BsrFI	RCCGGY	2 cut(s)	199, 340
BssAI	RCCGGY	2 cut(s)	199, 340
BssECI	CCNNGG	7 cut(s)	22, 168, 457, 477, 504, 521, 548
BssMI	GATC	5 cut(s)	9, 80, 94, 331, 553
BssNI	GRCGYC	1 cut(s)	488
BssT1I	CCWWGG	2 cut(s)	477, 548
Bst4CI	ACNGT	2 cut(s)	43, 195
BstACI	GRCGYC	1 cut(s)	488
BstBAI	YACGTR	2 cut(s)	530, 614
BstC8I	GCNNGC	6 cut(s)	201, 342, 395, 467, 608, 701
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	3 cut(s)	22, 457, 504
BstF5I	GGATG	1 cut(s)	590
BstFNI	CGCG	3 cut(s)	15, 305, 440
BstH2I	RGCGCY	2 cut(s)	269, 491
BstHHI	GCGC	5 cut(s)	268, 307, 364, 442, 490
BstKTI	GATC	5 cut(s)	12, 83, 97, 334, 556
BstMAI	GTCTC	1 cut(s)	514
BstMBI	GATC	5 cut(s)	9, 80, 94, 331, 553
BstMCI	CGRYCG	1 cut(s)	65
BstMWI	GCNNNNNNNGC	9 cut(s)	161, 196, 205, 263, 361, 448, 462, 523, 680
BstSCI	CCNGG	2 cut(s)	483, 596
BstSLI	GKGCMC	1 cut(s)	685
BstUI	CGCG	3 cut(s)	15, 305, 440
BstV1I	GCAGC	1 cut(s)	319
BstX2I	RGATCY	1 cut(s)	553
BstXI	CCANNNNNNTGG	1 cut(s)	358
BstYI	RGATCY	1 cut(s)	553
BstZI	CGGCCG	1 cut(s)	62
Bsu15I	ATCGAT	1 cut(s)	8
BsuRI	GGCC	9 cut(s)	64, 164, 456, 462, 526, 610, 618, 635, 703
BsuTUI	ATCGAT	1 cut(s)	8
BtgI	CCRYGG	3 cut(s)	22, 457, 504
BtsCI	GGATG	1 cut(s)	590
Cac8I	GCNNGC	6 cut(s)	201, 342, 395, 467, 608, 701
CfoI	GCGC	5 cut(s)	268, 307, 364, 442, 490
Cfr10I	RCCGGY	2 cut(s)	199, 340
Cfr13I	GGNCC	3 cut(s)	454, 481, 600
ClaI	ATCGAT	1 cut(s)	8
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	2 cut(s)	160, 421
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	231
DinI	GGCGCC	1 cut(s)	489
DpnI	GATC	5 cut(s)	11, 82, 96, 333, 555
DpnII	GATC	5 cut(s)	9, 80, 94, 331, 553
DraI	TTTAAA	1 cut(s)	118
DriI	GACNNNNNGTC	1 cut(s)	24
EaeI	YGGCCR	4 cut(s)	62, 162, 460, 616
EagI	CGGCCG	1 cut(s)	62
Eam1105I	GACNNNNNGTC	1 cut(s)	24
Ecl136II	GAGCTC	2 cut(s)	397, 585
EclXI	CGGCCG	1 cut(s)	62
Eco130I	CCWWGG	2 cut(s)	477, 548
Eco24I	GRGCYC	2 cut(s)	399, 587
Eco31I	GGTCTC	1 cut(s)	514
Eco47I	GGWCC	2 cut(s)	481, 600
Eco52I	CGGCCG	1 cut(s)	62
Eco53kI	GAGCTC	2 cut(s)	397, 585
Eco72I	CACGTG	2 cut(s)	530, 614
EcoICRI	GAGCTC	2 cut(s)	397, 585
EcoO109I	RGGNCCY	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	477, 548
EcoT38I	GRGCYC	2 cut(s)	399, 587
EgeI	GGCGCC	1 cut(s)	489
EheI	GGCGCC	1 cut(s)	489
ErhI	CCWWGG	2 cut(s)	477, 548
FaeI	CATG	2 cut(s)	163, 424
FaiI	YATR	4 cut(s)	52, 161, 251, 422
FaqI	GGGAC	2 cut(s)	208, 467
FatI	CATG	2 cut(s)	159, 420
FauI	CCCGC	3 cut(s)	444, 474, 573
Fnu4HI	GCNGC	9 cut(s)	65, 255, 308, 338, 391, 443, 463, 501, 619
FokI	GGATG	1 cut(s)	577
FriOI	GRGCYC	2 cut(s)	399, 587
Fsp4HI	GCNGC	9 cut(s)	65, 255, 308, 338, 391, 443, 463, 501, 619
FspBI	CTAG	4 cut(s)	71, 101, 549, 687
GlaI	GCGC	5 cut(s)	267, 306, 363, 441, 489
GluI	GCNGC	9 cut(s)	65, 255, 308, 338, 391, 443, 463, 501, 619
HaeII	RGCGCY	2 cut(s)	269, 491
HaeIII	GGCC	9 cut(s)	64, 164, 456, 462, 526, 610, 618, 635, 703
HhaI	GCGC	5 cut(s)	268, 307, 364, 442, 490
Hin1I	GRCGYC	1 cut(s)	488
Hin1II	CATG	2 cut(s)	163, 424
Hin6I	GCGC	5 cut(s)	266, 305, 362, 440, 488
HinP1I	GCGC	5 cut(s)	266, 305, 362, 440, 488
HinfI	GANTC	3 cut(s)	173, 317, 655
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	4 cut(s)	80, 522, 627, 648
Hpy188III	TCNNGA	4 cut(s)	90, 101, 376, 409
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	1 cut(s)	199
HpyAV	CCTTC	2 cut(s)	488, 625
HpyCH4III	ACNGT	2 cut(s)	43, 195
HpyCH4IV	ACGT	2 cut(s)	529, 613
HpyF10VI	GCNNNNNNNGC	9 cut(s)	161, 196, 205, 263, 361, 448, 462, 523, 680
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	2 cut(s)	529, 613
Hsp92I	GRCGYC	1 cut(s)	488
Hsp92II	CATG	2 cut(s)	163, 424
HspAI	GCGC	5 cut(s)	266, 305, 362, 440, 488
KasI	GGCGCC	1 cut(s)	487
Kpn2I	TCCGGA	1 cut(s)	89
KroI	GCCGGC	2 cut(s)	199, 340
KroNI	GCCGGC	2 cut(s)	201, 342
Kzo9I	GATC	5 cut(s)	9, 80, 94, 331, 553
LmnI	GCTCC	5 cut(s)	223, 497, 573, 673, 733
Lsp1109I	GCAGC	1 cut(s)	319
MaeI	CTAG	4 cut(s)	71, 101, 549, 687
MaeII	ACGT	2 cut(s)	529, 613
MaeIII	GTNAC	2 cut(s)	16, 26
MalI	GATC	5 cut(s)	11, 82, 96, 333, 555
MbiI	CCGCTC	2 cut(s)	390, 568
MboI	GATC	5 cut(s)	9, 80, 94, 331, 553
MboII	GAAGA	3 cut(s)	115, 253, 640
MfeI	CAATTG	1 cut(s)	573
MflI	RGATCY	1 cut(s)	553
MhlI	GDGCHC	3 cut(s)	399, 587, 685
MlsI	TGGCCA	1 cut(s)	164
MluCI	AATT	2 cut(s)	119, 573
MluNI	TGGCCA	1 cut(s)	164
Mly113I	GGCGCC	1 cut(s)	488
MlyI	GAGTC	3 cut(s)	182, 326, 649
MmeI	TCCRAC	3 cut(s)	25, 201, 671
Mox20I	TGGCCA	1 cut(s)	164
MroI	TCCGGA	1 cut(s)	89
MroNI	GCCGGC	2 cut(s)	199, 340
MscI	TGGCCA	1 cut(s)	164
MseI	TTAA	2 cut(s)	117, 270
MslI	CAYNNNNRTG	1 cut(s)	377
Msp20I	TGGCCA	1 cut(s)	164
MspR9I	CCNGG	2 cut(s)	485, 598
MunI	CAATTG	1 cut(s)	573
MvnI	CGCG	3 cut(s)	15, 305, 440
MwoI	GCNNNNNNNGC	9 cut(s)	161, 196, 205, 263, 361, 448, 462, 523, 680
NaeI	GCCGGC	2 cut(s)	201, 342
NarI	GGCGCC	1 cut(s)	488
NciI	CCSGG	2 cut(s)	485, 598
NdeII	GATC	5 cut(s)	9, 80, 94, 331, 553
NgoMIV	GCCGGC	2 cut(s)	199, 340
NlaIII	CATG	2 cut(s)	163, 424
NmuCI	GTSAC	2 cut(s)	16, 26
PcsI	WCGNNNNNNNCGW	1 cut(s)	671
PdiI	GCCGGC	2 cut(s)	201, 342
PkrI	GCNGC	9 cut(s)	66, 256, 309, 339, 392, 444, 464, 502, 620
PleI	GAGTC	3 cut(s)	181, 325, 649
PluTI	GGCGCC	1 cut(s)	491
PmaCI	CACGTG	2 cut(s)	530, 614
PmlI	CACGTG	2 cut(s)	530, 614
PpsI	GAGTC	3 cut(s)	181, 325, 649
Ppu21I	YACGTR	2 cut(s)	530, 614
PpuMI	RGGWCCY	1 cut(s)	481
Psp124BI	GAGCTC	2 cut(s)	399, 587
Psp5II	RGGWCCY	1 cut(s)	481
PspCI	CACGTG	2 cut(s)	530, 614
PspPI	GGNCC	3 cut(s)	454, 481, 600
PspPPI	RGGWCCY	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	553
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	377
SacI	GAGCTC	2 cut(s)	399, 587
SaqAI	TTAA	2 cut(s)	117, 270
SatI	GCNGC	9 cut(s)	65, 255, 308, 338, 391, 443, 463, 501, 619
Sau3AI	GATC	5 cut(s)	9, 80, 94, 331, 553
Sau96I	GGNCC	3 cut(s)	454, 481, 600
SchI	GAGTC	3 cut(s)	182, 326, 649
ScrFI	CCNGG	2 cut(s)	485, 598
SduI	GDGCHC	3 cut(s)	399, 587, 685
SfoI	GGCGCC	1 cut(s)	489
SinI	GGWCC	2 cut(s)	481, 600
SmiMI	CAYNNNNRTG	1 cut(s)	377
Sse9I	AATT	2 cut(s)	119, 573
SspDI	GGCGCC	1 cut(s)	487
SspMI	CTAG	4 cut(s)	71, 101, 549, 687
SstI	GAGCTC	2 cut(s)	399, 587
StyD4I	CCNGG	2 cut(s)	483, 596
StyI	CCWWGG	2 cut(s)	477, 548
TaaI	ACNGT	2 cut(s)	43, 195
TaiI	ACGT	2 cut(s)	532, 616
TaqI	TCGA	5 cut(s)	8, 287, 315, 587, 653
TasI	AATT	2 cut(s)	119, 573
TauI	GCSGC	8 cut(s)	67, 257, 340, 393, 445, 465, 503, 621
Tru1I	TTAA	2 cut(s)	117, 270
Tru9I	TTAA	2 cut(s)	117, 270
TseFI	GTSAC	2 cut(s)	16, 26
TseI	GCWGC	1 cut(s)	307
Tsp45I	GTSAC	2 cut(s)	16, 26
TspDTI	ATGAA	2 cut(s)	395, 437
TspGWI	ACGGA	3 cut(s)	210, 546, 712
VpaK11BI	GGWCC	2 cut(s)	481, 600
XapI	RAATTY	1 cut(s)	119
XbaI	TCTAGA	1 cut(s)	100
XmaJI	CCTAGG	1 cut(s)	548
XspI	CTAG	4 cut(s)	71, 101, 549, 687

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.