Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

32014608 .. 32015288

Gene Structure 681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g34011.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGAATGTCGATAGGCTCGGTCCTCCCAAGGCTAAGGATCTGTTTTTCCCAAATCCGATTGTCCAGAGCTTGACCTCGGGAGGAGGGTCAGGCAGGCCACCTGGCCGTCCTCCAAAGAAGGCCAAGGCTGCTCCGACCTCAACTTCGGCTAATGCTCCTGCTGCTCCGGTGAGTGGTGGTGGTAGTGGTGCTCTTAGAGGGAGAGGCAAGCCACCGAAAGTGATGCCCTCCGTGGCTCCGGTGGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

84

Amino Acids

8.13

Weight (kDa)

11.51

Isoelectric Point (pI)

52.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	45
AcoI	YGGCCR	1 cut(s)	103
AfiI	CCNNNNNNNGG	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
Alw21I	GWGCWC	1 cut(s)	193
AlwI	GGATC	1 cut(s)	45
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	3 cut(s)	95, 103, 120
ApeKI	GCWGC	2 cut(s)	128, 161
ArsI	GACNNNNNNTTYG	2 cut(s)	127, 159
AspS9I	GGNCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	115, 148
BceAI	ACGGC	1 cut(s)	90
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	102
BisI	GCNGC	2 cut(s)	129, 162
BlsI	GCNGC	2 cut(s)	130, 163
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	33
BsaJI	CCNNGG	4 cut(s)	27, 75, 123, 231
BsaWI	WCCGGW	2 cut(s)	166, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	4 cut(s)	27, 75, 123, 231
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseRI	GAGGAG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	115, 148
BshFI	GGCC	3 cut(s)	97, 105, 122
BsiHKAI	GWGCWC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	167, 239
BslI	CCNNNNNNNGG	1 cut(s)	173
BsnI	GGCC	3 cut(s)	97, 105, 122
BsoBI	CYCGRG	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	3 cut(s)	97, 105, 122
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	45
BssECI	CCNNGG	4 cut(s)	27, 75, 123, 231
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	2 cut(s)	27, 123
Bst2UI	CCWGG	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	95, 209
BstDEI	CTNAG	2 cut(s)	33, 194
BstDSI	CCRYGG	1 cut(s)	231
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 161
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	115, 148
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	3 cut(s)	97, 105, 122
BtgI	CCRYGG	1 cut(s)	231
Cac8I	GCNNGC	2 cut(s)	95, 209
Cfr13I	GGNCC	1 cut(s)	20
DdeI	CTNAG	2 cut(s)	33, 194
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
EaeI	YGGCCR	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	27, 123
Eco47I	GGWCC	1 cut(s)	20
Eco88I	CYCGRG	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	27, 123
ErhI	CCWWGG	2 cut(s)	27, 123
Fnu4HI	GCNGC	2 cut(s)	129, 162
Fsp4HI	GCNGC	2 cut(s)	129, 162
GluI	GCNGC	2 cut(s)	129, 162
HaeIII	GGCC	3 cut(s)	97, 105, 122
HapII	CCGG	2 cut(s)	167, 239
HpaII	CCGG	2 cut(s)	167, 239
HphI	GGTGA	1 cut(s)	181
Hpy188I	TCNGA	2 cut(s)	57, 135
Hpy188III	TCNNGA	2 cut(s)	64, 78
HpyAV	CCTTC	1 cut(s)	112
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 161
HpyF3I	CTNAG	2 cut(s)	33, 194
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	4 cut(s)	136, 160, 169, 241
LpnPI	CCDG	7 cut(s)	75, 77, 79, 87, 114, 171, 180
Lsp1109I	GCAGC	2 cut(s)	115, 148
LweI	GCATC	1 cut(s)	213
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MflI	RGATCY	1 cut(s)	37
MhlI	GDGCHC	1 cut(s)	193
MmeI	TCCRAC	1 cut(s)	158
MnlI	CCTC	9 cut(s)	33, 74, 77, 85, 120, 148, 191, 197, 238
MspI	CCGG	2 cut(s)	167, 239
MspR9I	CCNGG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	128, 161
NdeII	GATC	1 cut(s)	37
NlaIV	GGNNCC	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	130, 163
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspN4I	GGNNCC	1 cut(s)	237
PspPI	GGNCC	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	37
SatI	GCNGC	2 cut(s)	129, 162
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	20
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	193
SetI	ASST	4 cut(s)	71, 77, 103, 140
SfaNI	GCATC	1 cut(s)	213
SinI	GGWCC	1 cut(s)	20
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	2 cut(s)	27, 123
TaqI	TCGA	1 cut(s)	9
TaqII	GACCGA	1 cut(s)	8
TseI	GCWGC	2 cut(s)	128, 161
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	20

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.