Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Forward (+)

15370326 .. 15371545

Gene Structure 1220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22350.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGTCACCGATCCGCGTGACTCCTATCAACTCATTTTCCACCGTCAGATTGCACACACAACCGCCGTCCCTGACCGTCGAATCGCACTCCGGAGGTCATCCACCTTCTTTAGAAAACGCACCTTTTAAATTCTTGCTCTCTTTCATTTCCTTCTCTGCATCTCACTCTCTCCCAGACTCAAGTCTTCGTTTACAGAGAGAGCTTTCATGGCCACCACTGAGTCCTCCAACGACGCACCGGCACCGGCAAATCCAGCTCCTTCTGGCGCAGCACCTCGAGAAGATGAAGCAGAGCGGCGAGCTCGCTTTTGTGAAGAACAACTACATGAAGCCTGACCCCAACGTGCCGCCCAAGCGCGGCCGTGGCCGTCCTCCCAAGCCGAAGGTCCCGGGGGCTGAAGGAGCTGCTGCCGTGGTTTCCTCACCTCCGAGGCCACGTGGCAGGCCTCCCAAGGCTAAGGATCCGTTTTTCCTGATTCCGACTGTCCAGACCTCGACCTCAGGAGGAGGGTCACGCAGGCCACGTGGTCGTCCTCAGAAGAAGGCCAAGACTGCTCCAGCTAACGCTCCTGCTGCTCCGGCGAGTGGTGGCGGTAGTGGTGCTCCTAGAGGGAGAGGCAGGCCATCGAAAGTGAAGCCCTCTGTGGCTCCGTGCTTCTACGACTGGGTTCTTTCTGACTATGAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

230

Amino Acids

24.73

Weight (kDa)

11.26

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AccBSI	CCGCTC	1 cut(s)	294
AccII	CGCG	2 cut(s)	15, 357
AccIII	TCCGGA	1 cut(s)	89
AciI	CCGC	6 cut(s)	13, 62, 294, 347, 357, 591
AclWI	GGATC	3 cut(s)	4, 455, 468
AcoI	YGGCCR	3 cut(s)	209, 358, 364
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	417
AcvI	CACGTG	2 cut(s)	437, 524
AfiI	CCNNNNNNNGG	2 cut(s)	356, 584
AluBI	AGCT	5 cut(s)	202, 256, 301, 404, 560
AluI	AGCT	5 cut(s)	202, 256, 301, 404, 560
Alw21I	GWGCWC	2 cut(s)	303, 604
AlwI	GGATC	3 cut(s)	4, 455, 468
Ama87I	CYCGRG	2 cut(s)	275, 388
Aor13HI	TCCGGA	1 cut(s)	89
AoxI	GGCC	8 cut(s)	209, 358, 364, 431, 443, 518, 543, 620
ApeKI	GCWGC	4 cut(s)	268, 404, 407, 572
ApoI	RAATTY	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	268, 357
AspS9I	GGNCC	1 cut(s)	385
AsuC2I	CCSGG	2 cut(s)	389, 390
AsuHPI	GGTGA	1 cut(s)	414
AvaI	CYCGRG	2 cut(s)	275, 388
AvaII	GGWCC	1 cut(s)	385
AxyI	CCTNAGG	1 cut(s)	499
BalI	TGGCCA	1 cut(s)	211
BamHI	GGATCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	240
BanII	GRGCYC	1 cut(s)	303
BarI	GAAGNNNNNNTAC	2 cut(s)	305, 337
BbrPI	CACGTG	2 cut(s)	437, 524
BbsI	GAAGAC	1 cut(s)	176
Bbv12I	GWGCWC	2 cut(s)	303, 604
BbvI	GCAGC	4 cut(s)	280, 391, 394, 559
BccI	CCATC	1 cut(s)	631
BceAI	ACGGC	4 cut(s)	49, 345, 351, 395
BcnI	CCSGG	2 cut(s)	389, 390
BfaI	CTAG	1 cut(s)	606
BisI	GCNGC	7 cut(s)	269, 295, 347, 358, 405, 408, 573
BlsI	GCNGC	7 cut(s)	270, 296, 348, 359, 406, 409, 574
Bme1390I	CCNGG	2 cut(s)	389, 390
Bme18I	GGWCC	1 cut(s)	385
BmeT110I	CYCGRG	2 cut(s)	275, 388
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	4 cut(s)	242, 387, 462, 648
BmrFI	CCNGG	2 cut(s)	389, 390
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	673
BoxI	GACNNNNGTC	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	176
BpmI	CTGGAG	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	163
BpuMI	CCSGG	2 cut(s)	389, 390
BsaAI	YACGTR	2 cut(s)	437, 524
BsaJI	CCNNGG	6 cut(s)	361, 388, 389, 411, 428, 450
BsaWI	WCCGGW	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 584
Bse118I	RCCGGY	2 cut(s)	237, 243
Bse1I	ACTGG	1 cut(s)	668
Bse21I	CCTNAGG	1 cut(s)	499
BseAI	TCCGGA	1 cut(s)	89
BseDI	CCNNGG	6 cut(s)	361, 388, 389, 411, 428, 450
BseGI	GGATG	1 cut(s)	97
BseLI	CCNNNNNNNGG	2 cut(s)	356, 584
BseMII	CTCAG	3 cut(s)	209, 513, 548
BseNI	ACTGG	1 cut(s)	668
BseRI	GAGGAG	1 cut(s)	519
BseX3I	CGGCCG	1 cut(s)	358
BseXI	GCAGC	4 cut(s)	280, 391, 394, 559
Bsh1236I	CGCG	2 cut(s)	15, 357
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	8 cut(s)	211, 360, 366, 433, 445, 520, 545, 622
BshNI	GGYRCC	1 cut(s)	240
BsiEI	CGRYCG	1 cut(s)	361
BsiHKAI	GWGCWC	2 cut(s)	303, 604
BsiHKCI	CYCGRG	2 cut(s)	275, 388
BsiSI	CCGG	5 cut(s)	90, 238, 244, 389, 578
BslFI	GGGAC	2 cut(s)	52, 371
BslI	CCNNNNNNNGG	2 cut(s)	356, 584
BsmFI	GGGAC	2 cut(s)	52, 371
BsnI	GGCC	8 cut(s)	211, 360, 366, 433, 445, 520, 545, 622
BsoBI	CYCGRG	2 cut(s)	275, 388
Bsp1286I	GDGCHC	2 cut(s)	303, 604
Bsp13I	TCCGGA	1 cut(s)	89
Bsp143I	GATC	2 cut(s)	9, 460
BspACI	CCGC	6 cut(s)	13, 62, 294, 347, 357, 591
BspANI	GGCC	8 cut(s)	211, 360, 366, 433, 445, 520, 545, 622
BspCNI	CTCAG	3 cut(s)	210, 512, 547
BspEI	TCCGGA	1 cut(s)	89
BspFNI	CGCG	2 cut(s)	15, 357
BspLI	GGNNCC	4 cut(s)	242, 387, 462, 648
BspPI	GGATC	3 cut(s)	4, 455, 468
BspT107I	GGYRCC	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	294
BsrFI	RCCGGY	2 cut(s)	237, 243
BsrI	ACTGG	1 cut(s)	668
BssAI	RCCGGY	2 cut(s)	237, 243
BssECI	CCNNGG	6 cut(s)	361, 388, 389, 411, 428, 450
BssMI	GATC	2 cut(s)	9, 460
BssT1I	CCWWGG	1 cut(s)	450
Bst4CI	ACNGT	3 cut(s)	43, 76, 484
BstBAI	YACGTR	2 cut(s)	437, 524
BstC8I	GCNNGC	5 cut(s)	299, 303, 443, 518, 620
BstDEI	CTNAG	4 cut(s)	218, 456, 499, 534
BstDSI	CCRYGG	2 cut(s)	361, 411
BstF5I	GGATG	1 cut(s)	97
BstFNI	CGCG	2 cut(s)	15, 357
BstHHI	GCGC	2 cut(s)	268, 357
BstKTI	GATC	2 cut(s)	12, 463
BstMBI	GATC	2 cut(s)	9, 460
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	8 cut(s)	208, 253, 352, 363, 401, 551, 572, 578
BstPAI	GACNNNNGTC	1 cut(s)	180
BstSCI	CCNGG	2 cut(s)	387, 388
BstUI	CGCG	2 cut(s)	15, 357
BstV1I	GCAGC	4 cut(s)	280, 391, 394, 559
BstV2I	GAAGAC	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	460
BstYI	RGATCY	1 cut(s)	460
BstZI	CGGCCG	1 cut(s)	358
Bsu36I	CCTNAGG	1 cut(s)	499
BsuRI	GGCC	8 cut(s)	211, 360, 366, 433, 445, 520, 545, 622
BtgI	CCRYGG	2 cut(s)	361, 411
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	215
Cac8I	GCNNGC	5 cut(s)	299, 303, 443, 518, 620
CfoI	GCGC	2 cut(s)	268, 357
Cfr10I	RCCGGY	2 cut(s)	237, 243
Cfr13I	GGNCC	1 cut(s)	385
Cfr9I	CCCGGG	1 cut(s)	388
CseI	GACGC	1 cut(s)	241
CviAII	CATG	2 cut(s)	207, 325
DdeI	CTNAG	4 cut(s)	218, 456, 499, 534
DpnI	GATC	2 cut(s)	11, 462
DpnII	GATC	2 cut(s)	9, 460
DraI	TTTAAA	1 cut(s)	127
EaeI	YGGCCR	3 cut(s)	209, 358, 364
EagI	CGGCCG	1 cut(s)	358
Ecl136II	GAGCTC	1 cut(s)	301
EclXI	CGGCCG	1 cut(s)	358
Eco130I	CCWWGG	1 cut(s)	450
Eco147I	AGGCCT	1 cut(s)	445
Eco24I	GRGCYC	1 cut(s)	303
Eco47I	GGWCC	1 cut(s)	385
Eco52I	CGGCCG	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	417
Eco72I	CACGTG	2 cut(s)	437, 524
Eco81I	CCTNAGG	1 cut(s)	499
Eco88I	CYCGRG	2 cut(s)	275, 388
EcoICRI	GAGCTC	1 cut(s)	301
EcoO109I	RGGNCCY	1 cut(s)	385
EcoT14I	CCWWGG	1 cut(s)	450
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	2 cut(s)	210, 328
FaiI	YATR	3 cut(s)	208, 326, 681
FaqI	GGGAC	2 cut(s)	52, 371
FatI	CATG	2 cut(s)	206, 324
Fnu4HI	GCNGC	7 cut(s)	269, 295, 347, 358, 405, 408, 573
FokI	GGATG	1 cut(s)	84
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	7 cut(s)	269, 295, 347, 358, 405, 408, 573
FspBI	CTAG	1 cut(s)	606
GlaI	GCGC	2 cut(s)	267, 356
GluI	GCNGC	7 cut(s)	269, 295, 347, 358, 405, 408, 573
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	8 cut(s)	211, 360, 366, 433, 445, 520, 545, 622
HapII	CCGG	5 cut(s)	90, 238, 244, 389, 578
HgaI	GACGC	1 cut(s)	241
HhaI	GCGC	2 cut(s)	268, 357
Hin1II	CATG	2 cut(s)	210, 328
Hin6I	GCGC	2 cut(s)	266, 355
HinP1I	GCGC	2 cut(s)	266, 355
HinfI	GANTC	5 cut(s)	19, 80, 176, 220, 475
HpaII	CCGG	5 cut(s)	90, 238, 244, 389, 578
HphI	GGTGA	1 cut(s)	414
Hpy166II	GTNNAC	1 cut(s)	191
Hpy188I	TCNGA	5 cut(s)	47, 429, 480, 537, 676
Hpy188III	TCNNGA	5 cut(s)	90, 277, 472, 487, 501
Hpy8I	GTNNAC	1 cut(s)	191
Hpy99I	CGWCG	2 cut(s)	80, 235
HpyAV	CCTTC	6 cut(s)	114, 160, 269, 376, 392, 535
HpyCH4III	ACNGT	3 cut(s)	43, 76, 484
HpyCH4IV	ACGT	3 cut(s)	342, 436, 523
HpyCH4V	TGCA	2 cut(s)	52, 158
HpyF10VI	GCNNNNNNNGC	8 cut(s)	208, 253, 352, 363, 401, 551, 572, 578
HpyF3I	CTNAG	4 cut(s)	218, 456, 499, 534
HpySE526I	ACGT	3 cut(s)	342, 436, 523
Hsp92II	CATG	2 cut(s)	210, 328
HspAI	GCGC	2 cut(s)	266, 355
Kpn2I	TCCGGA	1 cut(s)	89
Kzo9I	GATC	2 cut(s)	9, 460
LmnI	GCTCC	7 cut(s)	261, 401, 559, 571, 580, 607, 652
Lsp1109I	GCAGC	4 cut(s)	280, 391, 394, 559
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	3 cut(s)	342, 436, 523
MaeIII	GTNAC	3 cut(s)	3, 16, 510
MalI	GATC	2 cut(s)	11, 462
MbiI	CCGCTC	1 cut(s)	294
MboI	GATC	2 cut(s)	9, 460
MboII	GAAGA	4 cut(s)	176, 292, 325, 550
MflI	RGATCY	1 cut(s)	460
MhlI	GDGCHC	2 cut(s)	303, 604
MlsI	TGGCCA	1 cut(s)	211
MluCI	AATT	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	211
MlyI	GAGTC	3 cut(s)	13, 170, 229
MmeI	TCCRAC	2 cut(s)	251, 503
Mox20I	TGGCCA	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	211
MseI	TTAA	2 cut(s)	126, 688
Msp20I	TGGCCA	1 cut(s)	211
MspI	CCGG	5 cut(s)	90, 238, 244, 389, 578
MspR9I	CCNGG	2 cut(s)	389, 390
MvnI	CGCG	2 cut(s)	15, 357
MwoI	GCNNNNNNNGC	8 cut(s)	208, 253, 352, 363, 401, 551, 572, 578
NciI	CCSGG	2 cut(s)	389, 390
NdeII	GATC	2 cut(s)	9, 460
NlaIII	CATG	2 cut(s)	210, 328
NlaIV	GGNNCC	4 cut(s)	242, 387, 462, 648
NmuCI	GTSAC	3 cut(s)	3, 16, 510
PaeR7I	CTCGAG	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	1 cut(s)	520
PfeI	GAWTC	2 cut(s)	80, 475
PkrI	GCNGC	7 cut(s)	270, 296, 348, 359, 406, 409, 574
PleI	GAGTC	3 cut(s)	13, 170, 228
PmaCI	CACGTG	2 cut(s)	437, 524
PmlI	CACGTG	2 cut(s)	437, 524
PpsI	GAGTC	3 cut(s)	13, 170, 228
Ppu21I	YACGTR	2 cut(s)	437, 524
PpuMI	RGGWCCY	1 cut(s)	385
PshAI	GACNNNNGTC	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	303
Psp5II	RGGWCCY	1 cut(s)	385
PspCI	CACGTG	2 cut(s)	437, 524
PspN4I	GGNNCC	4 cut(s)	242, 387, 462, 648
PspPI	GGNCC	1 cut(s)	385
PspPPI	RGGWCCY	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	460
SacI	GAGCTC	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	126, 688
SatI	GCNGC	7 cut(s)	269, 295, 347, 358, 405, 408, 573
Sau3AI	GATC	2 cut(s)	9, 460
Sau96I	GGNCC	1 cut(s)	385
SchI	GAGTC	3 cut(s)	13, 170, 229
ScrFI	CCNGG	2 cut(s)	389, 390
SduI	GDGCHC	2 cut(s)	303, 604
SfaNI	GCATC	1 cut(s)	167
Sfr274I	CTCGAG	1 cut(s)	275
SinI	GGWCC	1 cut(s)	385
SlaI	CTCGAG	1 cut(s)	275
SmaI	CCCGGG	1 cut(s)	390
SmlI	CTYRAG	2 cut(s)	178, 275
SmoI	CTYRAG	2 cut(s)	178, 275
Sse9I	AATT	1 cut(s)	128
SseBI	AGGCCT	1 cut(s)	445
SsiI	CCGC	6 cut(s)	13, 62, 294, 347, 357, 591
SspMI	CTAG	1 cut(s)	606
SstI	GAGCTC	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	445
StyD4I	CCNGG	2 cut(s)	387, 388
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	3 cut(s)	43, 76, 484
TaiI	ACGT	3 cut(s)	345, 439, 526
TaqI	TCGA	4 cut(s)	78, 276, 494, 626
TasI	AATT	1 cut(s)	128
TauI	GCSGC	3 cut(s)	297, 349, 360
TfiI	GAWTC	2 cut(s)	80, 475
Tru1I	TTAA	2 cut(s)	126, 688
Tru9I	TTAA	2 cut(s)	126, 688
TscAI	CASTG	1 cut(s)	222
TseFI	GTSAC	3 cut(s)	3, 16, 510
TseI	GCWGC	4 cut(s)	268, 404, 407, 572
Tsp45I	GTSAC	3 cut(s)	3, 16, 510
TspDTI	ATGAA	4 cut(s)	133, 195, 299, 341
TspGWI	ACGGA	2 cut(s)	453, 639
TspMI	CCCGGG	1 cut(s)	388
TspRI	CASTG	1 cut(s)	222
VpaK11BI	GGWCC	1 cut(s)	385
XapI	RAATTY	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	275
XmaI	CCCGGG	1 cut(s)	388
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.