Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

20212287 .. 20212946

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGACTCCTATCAACTCATTTTCCACCGTCAGATTGCACACACAACCGCAGTCCCTGACCATGAAGCAGAGCGGCGAGCTCACTTTTGTGAAGAACAACTACATGAAGCCTGACCCCAACGCGCCGCCCAAGCGCGGCCGTGGCCGTCCTCCCAAGCCGAAGGTCCCGGGGGCTGAAGAAGCTGCTGCTGTGGTTTCCTCGCCTCCGAGGCCACGTGGCAGGCCTCCCAAGGCTCTGATTGTCCAGAGCTCGACCTCGGGAGGAGGGTCAGGCAGGCCACGTGGTCGTCCTCCGAAGAAGGCCAAGACTGCTCCGGCTAACGCTCCTGCTGCTCGGACGAGTGGTGGTGGTAGTGGTGCTCCTAGAGGGAGAGGTAGGCCACCGAAAGTGAAGCCCTCCGTGGCTCCGGTGCATGGGTTGCTGAGCTCACACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

145

Amino Acids

14.9

Weight (kDa)

12.0

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	2 cut(s)	122, 135
AciI	CCGC	4 cut(s)	47, 72, 125, 135
AcoI	YGGCCR	2 cut(s)	136, 142
AcuI	CTGAAG	1 cut(s)	195
AcvI	CACGTG	2 cut(s)	215, 281
AfiI	CCNNNNNNNGG	2 cut(s)	134, 413
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	79, 182, 249, 426
AluI	AGCT	4 cut(s)	79, 182, 249, 426
Alw21I	GWGCWC	4 cut(s)	81, 251, 361, 428
AlwNI	CAGNNNCTG	1 cut(s)	55
Ama87I	CYCGRG	2 cut(s)	166, 256
AoxI	GGCC	7 cut(s)	136, 142, 209, 221, 275, 300, 377
ApeKI	GCWGC	3 cut(s)	182, 185, 329
AspLEI	GCGC	2 cut(s)	124, 135
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	2 cut(s)	167, 168
AvaI	CYCGRG	2 cut(s)	166, 256
AvaII	GGWCC	1 cut(s)	163
BanII	GRGCYC	3 cut(s)	81, 251, 428
BarI	GAAGNNNNNNTAC	2 cut(s)	83, 115
BbrPI	CACGTG	2 cut(s)	215, 281
Bbv12I	GWGCWC	4 cut(s)	81, 251, 361, 428
BbvI	GCAGC	3 cut(s)	169, 172, 316
BceAI	ACGGC	2 cut(s)	123, 129
BcnI	CCSGG	2 cut(s)	167, 168
BfaI	CTAG	1 cut(s)	363
BglI	GCCNNNNNGGC	1 cut(s)	208
BisI	GCNGC	6 cut(s)	73, 125, 136, 183, 186, 330
BlpI	GCTNAGC	1 cut(s)	422
BlsI	GCNGC	6 cut(s)	74, 126, 137, 184, 187, 331
Bme1390I	CCNGG	2 cut(s)	167, 168
Bme18I	GGWCC	1 cut(s)	163
BmeT110I	CYCGRG	2 cut(s)	166, 256
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	165, 405
BmrFI	CCNGG	2 cut(s)	167, 168
Bpu1102I	GCTNAGC	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	167, 168
BsaAI	YACGTR	2 cut(s)	215, 281
BsaJI	CCNNGG	7 cut(s)	139, 166, 167, 206, 228, 255, 399
BsaWI	WCCGGW	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 413
BseDI	CCNNGG	7 cut(s)	139, 166, 167, 206, 228, 255, 399
BseLI	CCNNNNNNNGG	2 cut(s)	134, 413
BseMII	CTCAG	1 cut(s)	413
BseRI	GAGGAG	1 cut(s)	276
BseX3I	CGGCCG	1 cut(s)	136
BseXI	GCAGC	3 cut(s)	169, 172, 316
Bsh1236I	CGCG	2 cut(s)	122, 135
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	7 cut(s)	138, 144, 211, 223, 277, 302, 379
BsiEI	CGRYCG	1 cut(s)	139
BsiHKAI	GWGCWC	4 cut(s)	81, 251, 361, 428
BsiHKCI	CYCGRG	2 cut(s)	166, 256
BsiSI	CCGG	3 cut(s)	167, 314, 407
BslFI	GGGAC	2 cut(s)	37, 149
BslI	CCNNNNNNNGG	2 cut(s)	134, 413
BsmFI	GGGAC	2 cut(s)	37, 149
BsnI	GGCC	7 cut(s)	138, 144, 211, 223, 277, 302, 379
BsoBI	CYCGRG	2 cut(s)	166, 256
Bsp1286I	GDGCHC	4 cut(s)	81, 251, 361, 428
Bsp1720I	GCTNAGC	1 cut(s)	422
BspACI	CCGC	4 cut(s)	47, 72, 125, 135
BspANI	GGCC	7 cut(s)	138, 144, 211, 223, 277, 302, 379
BspCNI	CTCAG	1 cut(s)	414
BspFNI	CGCG	2 cut(s)	122, 135
BspLI	GGNNCC	2 cut(s)	165, 405
BsrBI	CCGCTC	1 cut(s)	72
BssECI	CCNNGG	7 cut(s)	139, 166, 167, 206, 228, 255, 399
BssT1I	CCWWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	28
BstAPI	GCANNNNNTGC	1 cut(s)	418
BstBAI	YACGTR	2 cut(s)	215, 281
BstC8I	GCNNGC	3 cut(s)	77, 221, 275
BstDEI	CTNAG	1 cut(s)	422
BstDSI	CCRYGG	2 cut(s)	139, 399
BstFNI	CGCG	2 cut(s)	122, 135
BstHHI	GCGC	2 cut(s)	124, 135
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	7 cut(s)	130, 141, 179, 208, 308, 329, 418
BstSCI	CCNGG	2 cut(s)	165, 166
BstUI	CGCG	2 cut(s)	122, 135
BstV1I	GCAGC	3 cut(s)	169, 172, 316
BstZI	CGGCCG	1 cut(s)	136
BsuRI	GGCC	7 cut(s)	138, 144, 211, 223, 277, 302, 379
BtgI	CCRYGG	2 cut(s)	139, 399
BtsIMutI	CAGTG	1 cut(s)	430
Cac8I	GCNNGC	3 cut(s)	77, 221, 275
CaiI	CAGNNNCTG	1 cut(s)	55
CfoI	GCGC	2 cut(s)	124, 135
Cfr13I	GGNCC	1 cut(s)	163
Cfr9I	CCCGGG	1 cut(s)	166
CviAII	CATG	3 cut(s)	61, 103, 413
DdeI	CTNAG	1 cut(s)	422
EaeI	YGGCCR	2 cut(s)	136, 142
EagI	CGGCCG	1 cut(s)	136
Ecl136II	GAGCTC	3 cut(s)	79, 249, 426
EclXI	CGGCCG	1 cut(s)	136
Eco130I	CCWWGG	1 cut(s)	228
Eco147I	AGGCCT	1 cut(s)	223
Eco24I	GRGCYC	3 cut(s)	81, 251, 428
Eco47I	GGWCC	1 cut(s)	163
Eco52I	CGGCCG	1 cut(s)	136
Eco53kI	GAGCTC	3 cut(s)	79, 249, 426
Eco57I	CTGAAG	1 cut(s)	195
Eco72I	CACGTG	2 cut(s)	215, 281
Eco88I	CYCGRG	2 cut(s)	166, 256
EcoICRI	GAGCTC	3 cut(s)	79, 249, 426
EcoO109I	RGGNCCY	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	3 cut(s)	81, 251, 428
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	3 cut(s)	64, 106, 416
FaiI	YATR	3 cut(s)	62, 104, 414
FaqI	GGGAC	2 cut(s)	37, 149
FatI	CATG	3 cut(s)	60, 102, 412
Fnu4HI	GCNGC	6 cut(s)	73, 125, 136, 183, 186, 330
FriOI	GRGCYC	3 cut(s)	81, 251, 428
Fsp4HI	GCNGC	6 cut(s)	73, 125, 136, 183, 186, 330
FspBI	CTAG	1 cut(s)	363
GlaI	GCGC	2 cut(s)	123, 134
GluI	GCNGC	6 cut(s)	73, 125, 136, 183, 186, 330
HaeIII	GGCC	7 cut(s)	138, 144, 211, 223, 277, 302, 379
HapII	CCGG	3 cut(s)	167, 314, 407
HhaI	GCGC	2 cut(s)	124, 135
Hin1II	CATG	3 cut(s)	64, 106, 416
Hin6I	GCGC	2 cut(s)	122, 133
HinP1I	GCGC	2 cut(s)	122, 133
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	3 cut(s)	167, 314, 407
Hpy188I	TCNGA	5 cut(s)	32, 207, 237, 294, 336
Hpy188III	TCNNGA	2 cut(s)	244, 258
HpyAV	CCTTC	2 cut(s)	154, 292
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4IV	ACGT	2 cut(s)	214, 280
HpyCH4V	TGCA	2 cut(s)	37, 412
HpyF10VI	GCNNNNNNNGC	7 cut(s)	130, 141, 179, 208, 308, 329, 418
HpyF3I	CTNAG	1 cut(s)	422
HpySE526I	ACGT	2 cut(s)	214, 280
Hsp92II	CATG	3 cut(s)	64, 106, 416
HspAI	GCGC	2 cut(s)	122, 133
LmnI	GCTCC	4 cut(s)	316, 328, 364, 409
Lsp1109I	GCAGC	3 cut(s)	169, 172, 316
MaeI	CTAG	1 cut(s)	363
MaeII	ACGT	2 cut(s)	214, 280
MbiI	CCGCTC	1 cut(s)	72
MboII	GAAGA	3 cut(s)	103, 188, 307
MhlI	GDGCHC	4 cut(s)	81, 251, 361, 428
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	3 cut(s)	167, 314, 407
MspR9I	CCNGG	2 cut(s)	167, 168
MvnI	CGCG	2 cut(s)	122, 135
MwoI	GCNNNNNNNGC	7 cut(s)	130, 141, 179, 208, 308, 329, 418
NciI	CCSGG	2 cut(s)	167, 168
NlaIII	CATG	3 cut(s)	64, 106, 416
NlaIV	GGNNCC	2 cut(s)	165, 405
OliI	CACNNNNGTG	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	223
PkrI	GCNGC	6 cut(s)	74, 126, 137, 184, 187, 331
PmaCI	CACGTG	2 cut(s)	215, 281
PmlI	CACGTG	2 cut(s)	215, 281
Ppu21I	YACGTR	2 cut(s)	215, 281
PpuMI	RGGWCCY	1 cut(s)	163
Psp124BI	GAGCTC	3 cut(s)	81, 251, 428
Psp5II	RGGWCCY	1 cut(s)	163
PspCI	CACGTG	2 cut(s)	215, 281
PspN4I	GGNNCC	2 cut(s)	165, 405
PspPI	GGNCC	1 cut(s)	163
PspPPI	RGGWCCY	1 cut(s)	163
PstNI	CAGNNNCTG	1 cut(s)	55
RseI	CAYNNNNRTG	1 cut(s)	86
SacI	GAGCTC	3 cut(s)	81, 251, 428
SatI	GCNGC	6 cut(s)	73, 125, 136, 183, 186, 330
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	2 cut(s)	167, 168
SduI	GDGCHC	4 cut(s)	81, 251, 361, 428
SetI	ASST	9 cut(s)	81, 165, 184, 217, 251, 257, 283, 376, 428
SinI	GGWCC	1 cut(s)	163
SmaI	CCCGGG	1 cut(s)	168
SmiMI	CAYNNNNRTG	1 cut(s)	86
SseBI	AGGCCT	1 cut(s)	223
SsiI	CCGC	4 cut(s)	47, 72, 125, 135
SspMI	CTAG	1 cut(s)	363
SstI	GAGCTC	3 cut(s)	81, 251, 428
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	2 cut(s)	165, 166
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	1 cut(s)	28
TaiI	ACGT	2 cut(s)	217, 283
TaqI	TCGA	1 cut(s)	251
TauI	GCSGC	3 cut(s)	75, 127, 138
TseI	GCWGC	3 cut(s)	182, 185, 329
TspDTI	ATGAA	2 cut(s)	77, 119
TspGWI	ACGGA	1 cut(s)	388
TspMI	CCCGGG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	163
XmaI	CCCGGG	1 cut(s)	166
XspI	CTAG	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.