Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

72335818 .. 72336141

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG502600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAGCCCGACCCCAACGCGCCGCCCAAGAGGGGCAGTGGCCGCCCGCCCAAGCCCAAGGTCCCGGCGCCAGAAGGAGCCGCCGTGGTCTCCTCGCCTCCGAGGCCACGTGGCAGACCTCCCAAGCCTAGGGATCCATTTTTCCCGCTCCCAATTGCCAAGAGCTCGACATCCACTTGGTCCGGCAGGCCACGTGGCCGCCCTCCGAAGAAGGCCAAGACAAGTCCGACCTCGACTCTGGCTTCGGCTCCGGCGAGTGGTGCCCCTAGAGGTAGAGGCAGGCCACCGAAAGTCAAGCCCTCCGTAGCTCCGGTGGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

107

Amino Acids

11.05

Weight (kDa)

12.0

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	67, 260
AccBSI	CCGCTC	1 cut(s)	148
AccII	CGCG	1 cut(s)	20
AciI	CCGC	6 cut(s)	23, 43, 47, 81, 146, 199
AclWI	GGATC	2 cut(s)	128, 141
AcoI	YGGCCR	2 cut(s)	40, 196
AcvI	CACGTG	2 cut(s)	110, 194
AcyI	GRCGYC	1 cut(s)	68
AfiI	CCNNNNNNNGG	3 cut(s)	32, 129, 257
AluBI	AGCT	2 cut(s)	165, 308
AluI	AGCT	2 cut(s)	165, 308
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	2 cut(s)	128, 141
AoxI	GGCC	6 cut(s)	40, 104, 188, 196, 213, 281
ArsI	GACNNNNNNTTYG	2 cut(s)	226, 258
AspA2I	CCTAGG	1 cut(s)	128
AspLEI	GCGC	2 cut(s)	22, 70
AspS9I	GGNCC	2 cut(s)	61, 180
AsuC2I	CCSGG	1 cut(s)	65
AvaII	GGWCC	2 cut(s)	61, 180
AvrII	CCTAGG	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	133
BanI	GGYRCC	2 cut(s)	67, 260
BanII	GRGCYC	1 cut(s)	167
BbrPI	CACGTG	2 cut(s)	110, 194
Bbv12I	GWGCWC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	68
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	129, 267
BfoI	RGCGCY	1 cut(s)	71
BglI	GCCNNNNNGGC	1 cut(s)	103
BisI	GCNGC	4 cut(s)	23, 43, 81, 199
BlnI	CCTAGG	1 cut(s)	128
BlsI	GCNGC	4 cut(s)	24, 44, 82, 200
Bme1390I	CCNGG	1 cut(s)	65
Bme18I	GGWCC	2 cut(s)	61, 180
BmgT120I	GGNCC	2 cut(s)	61, 180
BmiI	GGNNCC	6 cut(s)	63, 69, 79, 135, 249, 262
BmrFI	CCNGG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	65
BsaAI	YACGTR	2 cut(s)	110, 194
BsaHI	GRCGYC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	94
BsaJI	CCNNGG	4 cut(s)	57, 84, 101, 128
BsaWI	WCCGGW	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	69, 99
Bsc4I	CCNNNNNNNGG	3 cut(s)	32, 129, 257
BseDI	CCNNGG	4 cut(s)	57, 84, 101, 128
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	3 cut(s)	32, 129, 257
BseRI	GAGGAG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	265
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	6 cut(s)	42, 106, 190, 198, 215, 283
BshNI	GGYRCC	2 cut(s)	67, 260
BsiHKAI	GWGCWC	1 cut(s)	167
BsiSI	CCGG	4 cut(s)	65, 183, 251, 311
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	32, 129, 257
BsmAI	GTCTC	1 cut(s)	94
BsmFI	GGGAC	1 cut(s)	47
BsnI	GGCC	6 cut(s)	42, 106, 190, 198, 215, 283
Bso31I	GGTCTC	1 cut(s)	94
Bsp1286I	GDGCHC	2 cut(s)	167, 265
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	6 cut(s)	23, 43, 47, 81, 146, 199
BspANI	GGCC	6 cut(s)	42, 106, 190, 198, 215, 283
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	6 cut(s)	63, 69, 79, 135, 249, 262
BspPI	GGATC	2 cut(s)	128, 141
BspT107I	GGYRCC	2 cut(s)	67, 260
BspTNI	GGTCTC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	148
BssECI	CCNNGG	4 cut(s)	57, 84, 101, 128
BssMI	GATC	1 cut(s)	133
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	2 cut(s)	57, 128
BstACI	GRCGYC	1 cut(s)	68
BstBAI	YACGTR	2 cut(s)	110, 194
BstC8I	GCNNGC	3 cut(s)	47, 188, 281
BstDSI	CCRYGG	1 cut(s)	84
BstF5I	GGATG	1 cut(s)	170
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	2 cut(s)	22, 70
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	3 cut(s)	42, 103, 260
BstSCI	CCNGG	1 cut(s)	63
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	6 cut(s)	42, 106, 190, 198, 215, 283
BtgI	CCRYGG	1 cut(s)	84
BtsCI	GGATG	1 cut(s)	170
BtsI	GCAGTG	1 cut(s)	43
BtsIMutI	CAGTG	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	47, 188, 281
CfoI	GCGC	2 cut(s)	22, 70
Cfr13I	GGNCC	2 cut(s)	61, 180
DinI	GGCGCC	1 cut(s)	69
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
EaeI	YGGCCR	2 cut(s)	40, 196
Ecl136II	GAGCTC	1 cut(s)	165
Eco130I	CCWWGG	2 cut(s)	57, 128
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	2 cut(s)	61, 180
Eco53kI	GAGCTC	1 cut(s)	165
Eco72I	CACGTG	2 cut(s)	110, 194
EcoICRI	GAGCTC	1 cut(s)	165
EcoO109I	RGGNCCY	1 cut(s)	61
EcoT14I	CCWWGG	2 cut(s)	57, 128
EcoT38I	GRGCYC	1 cut(s)	167
EgeI	GGCGCC	1 cut(s)	69
EheI	GGCGCC	1 cut(s)	69
ErhI	CCWWGG	2 cut(s)	57, 128
FaqI	GGGAC	1 cut(s)	47
FauI	CCCGC	2 cut(s)	54, 153
Fnu4HI	GCNGC	4 cut(s)	23, 43, 81, 199
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	4 cut(s)	23, 43, 81, 199
FspBI	CTAG	2 cut(s)	129, 267
GlaI	GCGC	2 cut(s)	21, 69
GluI	GCNGC	4 cut(s)	23, 43, 81, 199
HaeII	RGCGCY	1 cut(s)	71
HaeIII	GGCC	6 cut(s)	42, 106, 190, 198, 215, 283
HapII	CCGG	4 cut(s)	65, 183, 251, 311
HhaI	GCGC	2 cut(s)	22, 70
Hin1I	GRCGYC	1 cut(s)	68
Hin6I	GCGC	2 cut(s)	20, 68
HinP1I	GCGC	2 cut(s)	20, 68
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	4 cut(s)	65, 183, 251, 311
Hpy188I	TCNGA	3 cut(s)	102, 207, 228
HpyAV	CCTTC	2 cut(s)	68, 205
HpyCH4IV	ACGT	2 cut(s)	109, 193
HpyF10VI	GCNNNNNNNGC	3 cut(s)	42, 103, 260
HpySE526I	ACGT	2 cut(s)	109, 193
Hsp92I	GRCGYC	1 cut(s)	68
HspAI	GCGC	2 cut(s)	20, 68
KasI	GGCGCC	1 cut(s)	67
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	4 cut(s)	77, 153, 253, 313
LpnPI	CCDG	7 cut(s)	78, 84, 172, 196, 224, 264, 265
MaeI	CTAG	2 cut(s)	129, 267
MaeII	ACGT	2 cut(s)	109, 193
MalI	GATC	1 cut(s)	135
MbiI	CCGCTC	1 cut(s)	148
MboI	GATC	1 cut(s)	133
MboII	GAAGA	1 cut(s)	220
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	2 cut(s)	167, 265
MluCI	AATT	1 cut(s)	153
Mly113I	GGCGCC	1 cut(s)	68
MlyI	GAGTC	1 cut(s)	229
MmeI	TCCRAC	1 cut(s)	251
MspI	CCGG	4 cut(s)	65, 183, 251, 311
MspR9I	CCNGG	1 cut(s)	65
MunI	CAATTG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	42, 103, 260
NarI	GGCGCC	1 cut(s)	68
NciI	CCSGG	1 cut(s)	65
NdeII	GATC	1 cut(s)	133
NlaIV	GGNNCC	6 cut(s)	63, 69, 79, 135, 249, 262
PcsI	WCGNNNNNNNCGW	1 cut(s)	251
PkrI	GCNGC	4 cut(s)	24, 44, 82, 200
PleI	GAGTC	1 cut(s)	229
PluTI	GGCGCC	1 cut(s)	71
PmaCI	CACGTG	2 cut(s)	110, 194
PmlI	CACGTG	2 cut(s)	110, 194
PpsI	GAGTC	1 cut(s)	229
Ppu21I	YACGTR	2 cut(s)	110, 194
PpuMI	RGGWCCY	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	167
Psp5II	RGGWCCY	1 cut(s)	61
PspCI	CACGTG	2 cut(s)	110, 194
PspN4I	GGNNCC	6 cut(s)	63, 69, 79, 135, 249, 262
PspPI	GGNCC	2 cut(s)	61, 180
PspPPI	RGGWCCY	1 cut(s)	61
PsuI	RGATCY	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	167
SatI	GCNGC	4 cut(s)	23, 43, 81, 199
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	2 cut(s)	61, 180
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	1 cut(s)	65
SduI	GDGCHC	2 cut(s)	167, 265
SetI	ASST	8 cut(s)	63, 112, 121, 167, 196, 233, 274, 310
SfoI	GGCGCC	1 cut(s)	69
SinI	GGWCC	2 cut(s)	61, 180
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	6 cut(s)	23, 43, 47, 81, 146, 199
SspDI	GGCGCC	1 cut(s)	67
SspMI	CTAG	2 cut(s)	129, 267
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	63
StyI	CCWWGG	2 cut(s)	57, 128
TaiI	ACGT	2 cut(s)	112, 196
TaqI	TCGA	2 cut(s)	167, 233
TasI	AATT	1 cut(s)	153
TauI	GCSGC	4 cut(s)	25, 45, 83, 201
TscAI	CASTG	1 cut(s)	43
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	2 cut(s)	61, 180
XmaJI	CCTAGG	1 cut(s)	128
XspI	CTAG	2 cut(s)	129, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.