Rorug04G0347000

electron transfer activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000318
Physical Location & Seq
Forward (+)
51937881 .. 51939041
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0347000.1

Sequence Viewer

Length: 345 bp
ATGGAAGATCCTCAGAACGAGACCAGCAACAAGGATTTCATCATGGAGGTGGAGATTCCGGTGGATGATCCGTCGAGTACTCCACGTGAAACGGCATGTGGTCATCTCCATGGGCTTACAAGGCAGCAGAGTATGTCTAGGACGCCGAGTGCTAGCTGCCTTTGCTCCCCAACCACTCACGTAGGTTCATTCCGGTGCCGGCTCCACCGTTCTCCCAGCCTCAATAAGTCTTCGAGCTTCCAGAACAGACCGAGCCTCCAGAGGACAAAGAGCAGCATGGAATATGGATCATCATCGCCGCGCCGAGGAAGAATCGAGGCCACATCCAAGCCTGCTGCAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

114

Amino Acids

12.52

Weight (kDa)

9.16

Isoelectric Point (pI)

82.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 195
AccII CGCG 1 cut(s) 301
AciI CCGC 1 cut(s) 299
AclWI GGATC 3 cut(s) 2, 62, 295
AcvI CACGTG 1 cut(s) 86
AcyI GRCGYC 1 cut(s) 143
AfaI GTAC 1 cut(s) 79
AfiI CCNNNNNNNGG 2 cut(s) 305, 338
AluBI AGCT 2 cut(s) 156, 237
AluI AGCT 2 cut(s) 156, 237
Alw26I GTCTC 1 cut(s) 14
AlwI GGATC 3 cut(s) 2, 62, 295
AoxI GGCC 1 cut(s) 318
ApeKI GCWGC 4 cut(s) 124, 156, 273, 335
AspLEI GCGC 1 cut(s) 303
AsuNHI GCTAGC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 195
BbrPI CACGTG 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 222
BbvI GCAGC 4 cut(s) 136, 143, 285, 322
BceAI ACGGC 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 14
BfaI CTAG 3 cut(s) 138, 153, 343
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 5 cut(s) 125, 157, 274, 299, 336
BlsI GCNGC 5 cut(s) 126, 158, 275, 300, 337
BmcAI AGTACT 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 197, 203
BmtI GCTAGC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 242
BsaAI YACGTR 2 cut(s) 86, 181
BsaBI GATNNNNATC 1 cut(s) 292
BsaHI GRCGYC 1 cut(s) 143
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 109, 304
BsaWI WCCGGW 2 cut(s) 58, 192
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 338
Bse118I RCCGGY 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 292
BseDI CCNNGG 2 cut(s) 109, 304
BseGI GGATG 2 cut(s) 70, 323
BseJI GATNNNNATC 1 cut(s) 292
BseLI CCNNNNNNNGG 2 cut(s) 305, 338
BseMII CTCAG 1 cut(s) 26
BseXI GCAGC 4 cut(s) 136, 143, 285, 322
BseYI CCCAGC 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 301
BshFI GGCC 1 cut(s) 320
BshNI GGYRCC 1 cut(s) 195
BsiSI CCGG 3 cut(s) 59, 193, 199
BslI CCNNNNNNNGG 2 cut(s) 305, 338
BsmAI GTCTC 1 cut(s) 14
BsnI GGCC 1 cut(s) 320
Bso31I GGTCTC 1 cut(s) 14
Bsp143I GATC 3 cut(s) 7, 67, 287
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 1 cut(s) 299
BspANI GGCC 1 cut(s) 320
BspCNI CTCAG 1 cut(s) 25
BspFNI CGCG 1 cut(s) 301
BspLI GGNNCC 2 cut(s) 197, 203
BspMAI CTGCAG 1 cut(s) 340
BspOI GCTAGC 1 cut(s) 156
BspPI GGATC 3 cut(s) 2, 62, 295
BspT107I GGYRCC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 14
BsrFI RCCGGY 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 109, 304
BssMI GATC 3 cut(s) 7, 67, 287
BssNI GRCGYC 1 cut(s) 143
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 143
BstBAI YACGTR 2 cut(s) 86, 181
BstC8I GCNNGC 4 cut(s) 154, 200, 333, 340
BstDEI CTNAG 1 cut(s) 12
BstDSI CCRYGG 1 cut(s) 109
BstENI CCTNNNNNAGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 70, 323
BstFNI CGCG 1 cut(s) 301
BstHHI GCGC 1 cut(s) 303
BstKTI GATC 3 cut(s) 10, 70, 290
BstMAI GTCTC 1 cut(s) 14
BstMBI GATC 3 cut(s) 7, 67, 287
BstMWI GCNNNNNNNGC 2 cut(s) 121, 162
BstNSI RCATGY 1 cut(s) 99
BstSFI CTRYAG 1 cut(s) 336
BstUI CGCG 1 cut(s) 301
BstV1I GCAGC 4 cut(s) 136, 143, 285, 322
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 1 cut(s) 320
BtgI CCRYGG 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 279
BtsCI GGATG 2 cut(s) 70, 323
Cac8I GCNNGC 4 cut(s) 154, 200, 333, 340
CfoI GCGC 1 cut(s) 303
Cfr10I RCCGGY 1 cut(s) 198
CseI GACGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 78
CviAII CATG 4 cut(s) 43, 96, 110, 277
CviJI RGCY 9 cut(s) 115, 156, 202, 219, 237, 255, 320, 331, 342
CviKI_1 RGCY 9 cut(s) 115, 156, 202, 219, 237, 255, 320, 331, 342
CviQI GTAC 1 cut(s) 78
DdeI CTNAG 1 cut(s) 12
DpnI GATC 3 cut(s) 9, 69, 289
DpnII GATC 3 cut(s) 7, 67, 287
Eco130I CCWWGG 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 14
Eco72I CACGTG 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 46, 99, 113, 280
FaiI YATR 6 cut(s) 44, 97, 111, 134, 278, 285
FatI CATG 4 cut(s) 42, 95, 109, 276
Fnu4HI GCNGC 5 cut(s) 125, 157, 274, 299, 336
FokI GGATG 2 cut(s) 77, 310
Fsp4HI GCNGC 5 cut(s) 125, 157, 274, 299, 336
FspBI CTAG 3 cut(s) 138, 153, 343
GlaI GCGC 1 cut(s) 302
GluI GCNGC 5 cut(s) 125, 157, 274, 299, 336
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 320
HapII CCGG 3 cut(s) 59, 193, 199
HgaI GACGC 1 cut(s) 151
HhaI GCGC 1 cut(s) 303
Hin1I GRCGYC 1 cut(s) 143
Hin1II CATG 4 cut(s) 46, 99, 113, 280
Hin6I GCGC 1 cut(s) 301
HinP1I GCGC 1 cut(s) 301
HinfI GANTC 2 cut(s) 55, 312
HpaII CCGG 3 cut(s) 59, 193, 199
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 241, 259
Hpy99I CGWCG 1 cut(s) 76
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 2 cut(s) 85, 180
HpyCH4V TGCA 1 cut(s) 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 162
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 2 cut(s) 85, 180
Hsp92I GRCGYC 1 cut(s) 143
Hsp92II CATG 4 cut(s) 46, 99, 113, 280
HspAI GCGC 1 cut(s) 301
KroI GCCGGC 1 cut(s) 198
KroNI GCCGGC 1 cut(s) 200
Kzo9I GATC 3 cut(s) 7, 67, 287
LmnI GCTCC 2 cut(s) 170, 207
LpnPI CCDG 8 cut(s) 37, 72, 206, 212, 229, 254, 272, 324
Lsp1109I GCAGC 4 cut(s) 136, 143, 285, 322
MaeI CTAG 3 cut(s) 138, 153, 343
MaeII ACGT 2 cut(s) 85, 180
MalI GATC 3 cut(s) 9, 69, 289
MboI GATC 3 cut(s) 7, 67, 287
MboII GAAGA 3 cut(s) 17, 222, 321
MflI RGATCY 1 cut(s) 7
MnlI CCTC 7 cut(s) 21, 40, 230, 255, 266, 299, 310
MroNI GCCGGC 1 cut(s) 198
MslI CAYNNNNRTG 3 cut(s) 47, 108, 193
MspI CCGG 3 cut(s) 59, 193, 199
MvnI CGCG 1 cut(s) 301
MwoI GCNNNNNNNGC 2 cut(s) 121, 162
NaeI GCCGGC 1 cut(s) 200
NcoI CCATGG 1 cut(s) 109
NdeII GATC 3 cut(s) 7, 67, 287
NgoMIV GCCGGC 1 cut(s) 198
NheI GCTAGC 1 cut(s) 152
NlaIII CATG 4 cut(s) 46, 99, 113, 280
NlaIV GGNNCC 2 cut(s) 197, 203
NmeAIII GCCGAG 2 cut(s) 171, 329
NspI RCATGY 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 55, 312
PkrI GCNGC 5 cut(s) 126, 158, 275, 300, 337
PmaCI CACGTG 1 cut(s) 86
PmlI CACGTG 1 cut(s) 86
Ppu21I YACGTR 2 cut(s) 86, 181
PspCI CACGTG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 197, 203
PstI CTGCAG 1 cut(s) 340
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 79
RsaNI GTAC 1 cut(s) 78
RseI CAYNNNNRTG 3 cut(s) 47, 108, 193
SatI GCNGC 5 cut(s) 125, 157, 274, 299, 336
Sau3AI GATC 3 cut(s) 7, 67, 287
ScaI AGTACT 1 cut(s) 79
SetI ASST 6 cut(s) 51, 88, 158, 183, 187, 239
SfcI CTRYAG 1 cut(s) 336
SmiMI CAYNNNNRTG 3 cut(s) 47, 108, 193
SsiI CCGC 1 cut(s) 299
SspMI CTAG 3 cut(s) 138, 153, 343
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 2 cut(s) 88, 183
TaqI TCGA 3 cut(s) 74, 233, 315
TaqII GACCGA 1 cut(s) 265
TatI WGTACW 1 cut(s) 77
TauI GCSGC 1 cut(s) 301
TfiI GAWTC 2 cut(s) 55, 312
TseI GCWGC 4 cut(s) 124, 156, 273, 335
TspDTI ATGAA 2 cut(s) 28, 177
TspGWI ACGGA 1 cut(s) 60
XagI CCTNNNNNAGG 1 cut(s) 336
XceI RCATGY 1 cut(s) 99
XspI CTAG 3 cut(s) 138, 153, 343
ZrmI AGTACT 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.