Prupe.5G084400_v2.0.a1

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000318
Physical Location & Seq
Forward (+)
9691633 .. 9692776
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G084400.1

Sequence Viewer

Length: 522 bp
ATGGCCTCTTCCCAGCTCTTCATCATCTTTGCCATTCTAGCAATTTCTGCCCCTTCAATTTTGGCAACAAATTATGTTGTCGGCGACGGCAAAGGTTGGACCATTAACTTCGACTACCAAGCTTGGGCTCGGGGAAAGATGTTTTATGTTGGCGACAATCTTGTTTTTAACTATCCAAAAGGAGTCCACAATGTGTTCAAAGTGAATGGGACTGGATTCCAGCAATGTTCAGCTCCATTAGACAGTGTGCCATTAACCAGTGGACATGATGTGATCAGCCTTGCAACCTCTGGAAGAAAATGGTACATTTGTGGTGTTGCCCAGCACTGTGCAATGGGTGGCCAGAAGCTTCTTATAACCGTGTTCCCATCATCGTTTGCTCCAAGCCCCAGCCCCACCTGGGAAAGCAGCAACCCTTCATGGTCTGCTCCTGCCCCCAGCCCCACCTGGGGAAAGGAGGCAAAAGGCAAGCCATCCTCGCTTGCTCCTGCCCCCAGCCCCACCTGGGGCTACACCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

174

Amino Acids

18.42

Weight (kDa)

9.03

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AcoI YGGCCR 1 cut(s) 340
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 6 cut(s) 124, 400, 448, 449, 505, 506
AgsI TTSAA 2 cut(s) 57, 199
AjnI CCWGG 3 cut(s) 398, 446, 503
AluBI AGCT 4 cut(s) 16, 122, 233, 349
AluI AGCT 4 cut(s) 16, 122, 233, 349
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 2 cut(s) 3, 340
ApeKI GCWGC 1 cut(s) 408
AspS9I GGNCC 1 cut(s) 99
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 99
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BalI TGGCCA 1 cut(s) 342
BanII GRGCYC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 420
BccI CCATC 2 cut(s) 376, 481
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 3 cut(s) 400, 448, 505
BclI TGATCA 1 cut(s) 273
BfaI CTAG 2 cut(s) 38, 520
BisI GCNGC 1 cut(s) 409
BlsI GCNGC 1 cut(s) 410
Bme1390I CCNGG 3 cut(s) 400, 448, 505
Bme18I GGWCC 1 cut(s) 99
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 99
BmrFI CCNGG 3 cut(s) 400, 448, 505
BsaJI CCNNGG 3 cut(s) 399, 447, 504
Bsc4I CCNNNNNNNGG 6 cut(s) 124, 400, 448, 449, 505, 506
Bse118I RCCGGY 1 cut(s) 515
Bse1I ACTGG 2 cut(s) 217, 258
Bse3DI GCAATG 2 cut(s) 230, 339
BseBI CCWGG 3 cut(s) 400, 448, 505
BseDI CCNNGG 3 cut(s) 399, 447, 504
BseGI GGATG 1 cut(s) 473
BseLI CCNNNNNNNGG 6 cut(s) 124, 400, 448, 449, 505, 506
BseMI GCAATG 2 cut(s) 230, 339
BseNI ACTGG 2 cut(s) 217, 258
BseXI GCAGC 1 cut(s) 420
BseYI CCCAGC 5 cut(s) 12, 321, 389, 437, 494
BshFI GGCC 2 cut(s) 5, 342
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 516
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 6 cut(s) 124, 400, 448, 449, 505, 506
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 2 cut(s) 5, 342
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 273
BspANI GGCC 2 cut(s) 5, 342
BspQI GCTCTTC 1 cut(s) 23
BsrDI GCAATG 2 cut(s) 230, 339
BsrFI RCCGGY 1 cut(s) 515
BsrI ACTGG 2 cut(s) 217, 258
BssAI RCCGGY 1 cut(s) 515
BssECI CCNNGG 3 cut(s) 399, 447, 504
BssMI GATC 1 cut(s) 273
Bst2UI CCWGG 3 cut(s) 400, 448, 505
Bst4CI ACNGT 3 cut(s) 245, 329, 361
Bst6I CTCTTC 2 cut(s) 13, 23
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 470, 483
BstF5I GGATG 1 cut(s) 473
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 478, 516
BstNI CCWGG 3 cut(s) 400, 448, 505
BstSCI CCNGG 3 cut(s) 398, 446, 503
BstV1I GCAGC 1 cut(s) 420
BsuRI GGCC 2 cut(s) 5, 342
BtsCI GGATG 1 cut(s) 473
BtsIMutI CAGTG 3 cut(s) 250, 265, 325
Cac8I GCNNGC 2 cut(s) 470, 483
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 304
CviAII CATG 2 cut(s) 266, 420
CviQI GTAC 1 cut(s) 304
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 13, 23
EarI CTCTTC 2 cut(s) 13, 23
Eco24I GRGCYC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 99
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 3 cut(s) 398, 446, 503
EcoT38I GRGCYC 1 cut(s) 130
FaeI CATG 2 cut(s) 269, 423
FaiI YATR 5 cut(s) 75, 147, 267, 356, 421
FaqI GGGAC 1 cut(s) 223
FatI CATG 2 cut(s) 265, 419
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 409
FokI GGATG 1 cut(s) 460
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 409
FspBI CTAG 2 cut(s) 38, 520
GluI GCNGC 1 cut(s) 409
GsaI CCCAGC 5 cut(s) 16, 325, 393, 441, 498
HaeIII GGCC 2 cut(s) 5, 342
HapII CCGG 1 cut(s) 516
Hin1II CATG 2 cut(s) 269, 423
HindIII AAGCTT 2 cut(s) 120, 347
HinfI GANTC 2 cut(s) 183, 216
HpaII CCGG 1 cut(s) 516
Hpy166II GTNNAC 2 cut(s) 187, 263
Hpy188III TCNNGA 1 cut(s) 291
Hpy8I GTNNAC 2 cut(s) 187, 263
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 2 cut(s) 63, 426
HpyCH4III ACNGT 3 cut(s) 245, 329, 361
HpyCH4V TGCA 2 cut(s) 284, 332
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 478, 516
Hsp92II CATG 2 cut(s) 269, 423
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 1 cut(s) 273
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 4 cut(s) 238, 385, 433, 490
Lsp1109I GCAGC 1 cut(s) 420
MaeI CTAG 2 cut(s) 38, 520
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 2 cut(s) 10, 306
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 342
MluCI AATT 3 cut(s) 42, 57, 70
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 4 cut(s) 16, 298, 451, 487
Mox20I TGGCCA 1 cut(s) 342
MscI TGGCCA 1 cut(s) 342
MseI TTAA 3 cut(s) 105, 168, 254
Msp20I TGGCCA 1 cut(s) 342
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 3 cut(s) 400, 448, 505
MvaI CCWGG 3 cut(s) 400, 448, 505
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 478, 516
NdeII GATC 1 cut(s) 273
NlaIII CATG 2 cut(s) 269, 423
PciSI GCTCTTC 1 cut(s) 23
PfeI GAWTC 1 cut(s) 216
PkrI GCNGC 1 cut(s) 410
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PsiI TTATAA 1 cut(s) 356
Psp6I CCWGG 3 cut(s) 398, 446, 503
PspFI CCCAGC 5 cut(s) 12, 321, 389, 437, 494
PspGI CCWGG 3 cut(s) 398, 446, 503
PspPI GGNCC 1 cut(s) 99
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 105, 168, 254
SatI GCNGC 1 cut(s) 409
Sau3AI GATC 1 cut(s) 273
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 3 cut(s) 400, 448, 505
SduI GDGCHC 1 cut(s) 130
SetI ASST 9 cut(s) 18, 97, 124, 235, 290, 351, 401, 449, 506
SinI GGWCC 1 cut(s) 99
Sse9I AATT 3 cut(s) 42, 57, 70
SspMI CTAG 2 cut(s) 38, 520
StyD4I CCNGG 3 cut(s) 398, 446, 503
TaaI ACNGT 3 cut(s) 245, 329, 361
TaqI TCGA 1 cut(s) 111
TasI AATT 3 cut(s) 42, 57, 70
TfiI GAWTC 1 cut(s) 216
Tru1I TTAA 3 cut(s) 105, 168, 254
Tru9I TTAA 3 cut(s) 105, 168, 254
TscAI CASTG 3 cut(s) 250, 265, 332
TseI GCWGC 1 cut(s) 408
TspDTI ATGAA 2 cut(s) 10, 408
TspRI CASTG 3 cut(s) 250, 265, 332
VpaK11BI GGWCC 1 cut(s) 99
XspI CTAG 2 cut(s) 38, 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.