AT3G17675

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000318
Physical Location & Seq
Reverse (-)
6042244 .. 6042850
607 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G17675.1

Sequence Viewer

Length: 390 bp
ATGCTTCATCAGGGAAGCCGATTCTCTAGCTTGATTATACTCTATGCCATTTTCTCTTTATCTTCTCTCATGCTAAAATCTGAAGGAACAGAGCATATAGTTGGTGACAGCAATGGCTGGGAACTCTTTACAAACTATACCAACTGGACACAGGGAAGAGAGTTTCATGTCGGCGATGTCTTAGTATTCAACTACAAAAGTGACCAGCATAATGTTATGCAAGTTAACTCTACAGCATACACAGATTGTGGATTAGACAATTACACAACTCTCTTCACCAAAGGTAACGACTCAATAATCCTATCAGAAGTTGGAAAGCTATGGTTCATCTGTGGAGTGGATGATCACTGTGTAAATGGCCAGAAGCTAAGCATTAATGTAGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

129

Amino Acids

14.46

Weight (kDa)

5.1

Isoelectric Point (pI)

16.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 40 - 121 6.4e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 358
AcuI CTGAAG 1 cut(s) 102
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 4 cut(s) 30, 319, 367, 383
AluI AGCT 4 cut(s) 30, 319, 367, 383
AoxI GGCC 1 cut(s) 358
AseI ATTAAT 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 116, 268
BalI TGGCCA 1 cut(s) 360
BclI TGATCA 1 cut(s) 343
BfaI CTAG 1 cut(s) 27
BfmI CTRYAG 1 cut(s) 231
BlpI GCTNAGC 1 cut(s) 368
Bpu1102I GCTNAGC 1 cut(s) 368
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 118
BseGI GGATG 1 cut(s) 346
BseMI GCAATG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 149
BseYI CCCAGC 1 cut(s) 117
BshFI GGCC 1 cut(s) 360
BsnI GGCC 1 cut(s) 360
Bsp143I GATC 1 cut(s) 343
Bsp1720I GCTNAGC 1 cut(s) 368
BspANI GGCC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 149
BssMI GATC 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 2 cut(s) 151, 278
BstDEI CTNAG 2 cut(s) 181, 368
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 1 cut(s) 346
BstMBI GATC 1 cut(s) 343
BstSFI CTRYAG 1 cut(s) 231
BsuRI GGCC 1 cut(s) 360
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 1 cut(s) 346
BtsIMutI CAGTG 1 cut(s) 346
CviAII CATG 2 cut(s) 70, 167
CviJI RGCY 7 cut(s) 18, 30, 117, 319, 360, 367, 383
CviKI_1 RGCY 7 cut(s) 18, 30, 117, 319, 360, 367, 383
DdeI CTNAG 2 cut(s) 181, 368
DpnI GATC 1 cut(s) 345
DpnII GATC 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 358
Eam1104I CTCTTC 2 cut(s) 151, 278
EarI CTCTTC 2 cut(s) 151, 278
Eco57I CTGAAG 1 cut(s) 102
FaeI CATG 2 cut(s) 73, 170
FatI CATG 2 cut(s) 69, 166
FbaI TGATCA 1 cut(s) 343
FokI GGATG 1 cut(s) 353
FspBI CTAG 1 cut(s) 27
GsaI CCCAGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 360
Hin1II CATG 2 cut(s) 73, 170
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 2 cut(s) 21, 290
HpaI GTTAAC 1 cut(s) 226
HphI GGTGA 2 cut(s) 116, 268
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 82, 307
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4V TGCA 1 cut(s) 220
HpyF3I CTNAG 2 cut(s) 181, 368
Hsp92II CATG 2 cut(s) 73, 170
Ksp22I TGATCA 1 cut(s) 343
KspAI GTTAAC 1 cut(s) 226
Kzo9I GATC 1 cut(s) 343
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 5 cut(s) 103, 130, 137, 218, 374
MaeI CTAG 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 104, 200, 284
MalI GATC 1 cut(s) 345
MboI GATC 1 cut(s) 343
MboII GAAGA 3 cut(s) 54, 168, 265
MlsI TGGCCA 1 cut(s) 360
MluCI AATT 1 cut(s) 259
MluNI TGGCCA 1 cut(s) 360
MlyI GAGTC 1 cut(s) 284
MmeI TCCRAC 1 cut(s) 292
Mox20I TGGCCA 1 cut(s) 360
MscI TGGCCA 1 cut(s) 360
MseI TTAA 2 cut(s) 225, 375
Msp20I TGGCCA 1 cut(s) 360
NdeII GATC 1 cut(s) 343
NlaIII CATG 2 cut(s) 73, 170
NmuCI GTSAC 2 cut(s) 104, 200
PfeI GAWTC 1 cut(s) 21
PleI GAGTC 1 cut(s) 284
PpsI GAGTC 1 cut(s) 284
PshBI ATTAAT 1 cut(s) 375
PspFI CCCAGC 1 cut(s) 117
SaqAI TTAA 2 cut(s) 225, 375
Sau3AI GATC 1 cut(s) 343
SchI GAGTC 1 cut(s) 284
SetI ASST 5 cut(s) 32, 286, 321, 369, 385
SfcI CTRYAG 1 cut(s) 231
Sse9I AATT 1 cut(s) 259
SspMI CTAG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 350
TasI AATT 1 cut(s) 259
TfiI GAWTC 1 cut(s) 21
Tru1I TTAA 2 cut(s) 225, 375
Tru9I TTAA 2 cut(s) 225, 375
TscAI CASTG 1 cut(s) 353
TseFI GTSAC 2 cut(s) 104, 200
Tsp45I GTSAC 2 cut(s) 104, 200
TspDTI ATGAA 2 cut(s) 155, 316
TspRI CASTG 1 cut(s) 353
VspI ATTAAT 1 cut(s) 375
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.