Rroxscaffold_3G00256100

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000318
Physical Location & Seq
Reverse (-)
50520734 .. 50521237
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00256100.1

Sequence Viewer

Length: 399 bp
ATGGCCTCTTCCAAGCTCTTCACTGTCCTTGCCGTCCTAGCAATTTTTTCCCCTGCAACTTTGGCTAAAGATTATGTTGTGGGTGACGAAGAAGGTTGGACCGTTAAATTTGACTATGAAGCTTGGGTTAAAGGAAAGCAGTTCCATGTCGGTGACAGCCTTATATCCACCCGGTGTCCATGCCACAATGTGGTTGAAGTGAAGGAGGAGGAGTTCAAAGAATGTGCAGGTCCTTCTAGCACTAAGCCATTAACAAGTGGAGAGGATGTGATCAAGCTTGATGCTCCAGGAAAGAAATGGTTCATTTGCAGTGTTGGTAAACATTGTGAGTTGGGCAACCAGAAGGTTGCTATAAACGTGCTATCATCTTCATCTTCCTCTTCCTCTGCTCCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

132

Amino Acids

14.2

Weight (kDa)

5.9

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 112 9.1e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 218
AccB7I CCANNNNNTGG 1 cut(s) 190
AcsI RAATTY 1 cut(s) 107
AdeI CACNNNGTG 2 cut(s) 174, 190
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 2 cut(s) 197, 217
AjnI CCWGG 1 cut(s) 286
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 4 cut(s) 16, 122, 277, 396
AluI AGCT 4 cut(s) 16, 122, 277, 396
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 299
AspS9I GGNCC 2 cut(s) 99, 230
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 2 cut(s) 95, 164
AvaII GGWCC 2 cut(s) 99, 230
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 288
BclI TGATCA 1 cut(s) 270
BcnI CCSGG 1 cut(s) 172
BfaI CTAG 4 cut(s) 38, 237, 393, 397
BfuAI ACCTGC 1 cut(s) 218
Bme1390I CCNGG 2 cut(s) 172, 288
Bme18I GGWCC 2 cut(s) 99, 230
BmgT120I GGNCC 2 cut(s) 99, 230
BmrFI CCNGG 2 cut(s) 172, 288
BmsI GCATC 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 172
BsaXI ACNNNNNCTCC 4 cut(s) 197, 227, 252, 282
Bsc4I CCNNNNNNNGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 288
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 190
BseRI GAGGAG 2 cut(s) 221, 224
BsgI GTGCAG 1 cut(s) 246
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 172
BslI CCNNNNNNNGG 1 cut(s) 190
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 270
BspANI GGCC 1 cut(s) 5
BspMI ACCTGC 1 cut(s) 218
BspQI GCTCTTC 1 cut(s) 23
BssMI GATC 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 2 cut(s) 25, 103
Bst6I CTCTTC 3 cut(s) 13, 23, 385
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 1 cut(s) 273
BstMBI GATC 1 cut(s) 270
BstMWI GCNNNNNNNGC 2 cut(s) 38, 62
BstNI CCWGG 1 cut(s) 288
BstSCI CCNGG 2 cut(s) 170, 286
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 316
BtsIMutI CAGTG 2 cut(s) 21, 316
BveI ACCTGC 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 99, 230
CviAII CATG 2 cut(s) 146, 180
CviJI RGCY 8 cut(s) 5, 16, 65, 122, 159, 247, 277, 396
CviKI_1 RGCY 8 cut(s) 5, 16, 65, 122, 159, 247, 277, 396
DdeI CTNAG 1 cut(s) 243
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
DraIII CACNNNGTG 2 cut(s) 174, 190
Eam1104I CTCTTC 3 cut(s) 13, 23, 385
EarI CTCTTC 3 cut(s) 13, 23, 385
Eco47I GGWCC 2 cut(s) 99, 230
EcoO109I RGGNCCY 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 149, 183
FaiI YATR 6 cut(s) 75, 117, 147, 164, 181, 353
FatI CATG 2 cut(s) 145, 179
FbaI TGATCA 1 cut(s) 270
FokI GGATG 1 cut(s) 278
FspBI CTAG 4 cut(s) 38, 237, 393, 397
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 172
Hin1II CATG 2 cut(s) 149, 183
HindIII AAGCTT 2 cut(s) 120, 275
HpaII CCGG 1 cut(s) 172
HphI GGTGA 2 cut(s) 95, 164
Hpy166II GTNNAC 1 cut(s) 320
Hpy8I GTNNAC 1 cut(s) 320
HpyAV CCTTC 4 cut(s) 86, 196, 243, 337
HpyCH4III ACNGT 2 cut(s) 25, 103
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 3 cut(s) 56, 227, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 62
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 2 cut(s) 149, 183
Ksp22I TGATCA 1 cut(s) 270
Kzo9I GATC 1 cut(s) 270
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 289, 394
LpnPI CCDG 6 cut(s) 66, 185, 213, 273, 300, 353
LweI GCATC 1 cut(s) 271
MaeI CTAG 4 cut(s) 38, 237, 393, 397
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 2 cut(s) 83, 152
MalI GATC 1 cut(s) 272
MboI GATC 1 cut(s) 270
MboII GAAGA 5 cut(s) 10, 101, 360, 366, 372
MluCI AATT 2 cut(s) 42, 107
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 6 cut(s) 16, 199, 202, 256, 388, 394
MroXI GAANNNNTTC 1 cut(s) 299
MseI TTAA 3 cut(s) 105, 129, 251
MslI CAYNNNNRTG 1 cut(s) 150
MspI CCGG 1 cut(s) 172
MspR9I CCNGG 2 cut(s) 172, 288
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 2 cut(s) 38, 62
NciI CCSGG 1 cut(s) 172
NdeII GATC 1 cut(s) 270
NlaIII CATG 2 cut(s) 149, 183
NmuCI GTSAC 2 cut(s) 83, 152
PciSI GCTCTTC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 190
PfoI TCCNGGA 1 cut(s) 286
PpuMI RGGWCCY 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 230
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspPI GGNCC 2 cut(s) 99, 230
PspPPI RGGWCCY 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 105, 129, 251
Sau3AI GATC 1 cut(s) 270
Sau96I GGNCC 2 cut(s) 99, 230
ScrFI CCNGG 2 cut(s) 172, 288
SetI ASST 8 cut(s) 18, 97, 124, 232, 279, 348, 360, 398
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 2 cut(s) 99, 230
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 2 cut(s) 42, 107
SspMI CTAG 4 cut(s) 38, 237, 393, 397
StyD4I CCNGG 2 cut(s) 170, 286
TaaI ACNGT 2 cut(s) 25, 103
TaiI ACGT 1 cut(s) 360
TasI AATT 2 cut(s) 42, 107
Tru1I TTAA 3 cut(s) 105, 129, 251
Tru9I TTAA 3 cut(s) 105, 129, 251
TscAI CASTG 2 cut(s) 28, 316
TseFI GTSAC 2 cut(s) 83, 152
Tsp45I GTSAC 2 cut(s) 83, 152
TspDTI ATGAA 3 cut(s) 132, 292, 360
TspRI CASTG 2 cut(s) 28, 316
Van91I CCANNNNNTGG 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 99, 230
XapI RAATTY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
XmnI GAANNNNTTC 1 cut(s) 299
XspI CTAG 4 cut(s) 38, 237, 393, 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.