RchiOBHm_Chr2g0154471

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000318
Physical Location & Seq
Reverse (-)
71631743 .. 71632157
415 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52346

Sequence Viewer

Length: 312 bp
ATGACAAAGGTTGGACCATTAATGTTGATTACCGAGCCTGGGCTCAGGGAAAGCTCTTCGTTATCGGTGACAACCACGGTATTTTTTAACTACCCAGAAGGAGTTCACAATGTTCTCAAAGTGAATGGAACTGGGTTCCAAGAATGTGCAGCTCCTGCAGGCACTGTGGTATTAACAAGTGGAAAGGATGTGATAAACCTAGCAACCACAGGAAGAAAATGGTACATTTGTGGTGTTTCTAAGCACCGTCAAGTTGGACCCCAGAAGCTGTTCATAACTGTGATGCCAGCTTCCTTTGCTCCTAGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

103

Amino Acids

11.04

Weight (kDa)

9.62

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 18 - 86 1.4e-12 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 224
AfiI CCNNNNNNNGG 1 cut(s) 39
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 4 cut(s) 54, 152, 268, 290
AluI AGCT 4 cut(s) 54, 152, 268, 290
AlwNI CAGNNNCTG 3 cut(s) 155, 164, 268
ApeKI GCWGC 1 cut(s) 149
AseI ATTAAT 1 cut(s) 20
Asp700I GAANNNNTTC 2 cut(s) 102, 269
AspA2I CCTAGG 1 cut(s) 302
AspS9I GGNCC 3 cut(s) 14, 257, 306
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 3 cut(s) 14, 257, 306
AvrII CCTAGG 1 cut(s) 302
BaeI ACNNNNGTAYC 2 cut(s) 214, 247
BanII GRGCYC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 39
BfaI CTAG 3 cut(s) 200, 303, 310
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 1 cut(s) 150
BlnI CCTAGG 1 cut(s) 302
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 3 cut(s) 14, 257, 306
BmgT120I GGNCC 3 cut(s) 14, 257, 306
BmiI GGNNCC 2 cut(s) 137, 259
BmrFI CCNGG 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 38, 75, 302
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 136
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 3 cut(s) 38, 75, 302
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 161
BsgI GTGCAG 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 39
Bsp1286I GDGCHC 1 cut(s) 45
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 137, 259
BspMAI CTGCAG 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 61
BsrI ACTGG 1 cut(s) 136
BssECI CCNNGG 3 cut(s) 38, 75, 302
BssT1I CCWWGG 1 cut(s) 302
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 4 cut(s) 79, 166, 248, 280
Bst6I CTCTTC 1 cut(s) 61
BstAPI GCANNNNNTGC 1 cut(s) 155
BstC8I GCNNGC 2 cut(s) 160, 288
BstDEI CTNAG 2 cut(s) 44, 240
BstDSI CCRYGG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 155, 296
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstSFI CTRYAG 1 cut(s) 156
BstV1I GCAGC 1 cut(s) 161
BtgI CCRYGG 1 cut(s) 75
BtsCI GGATG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 160, 288
CaiI CAGNNNCTG 3 cut(s) 155, 164, 268
Cfr13I GGNCC 3 cut(s) 14, 257, 306
Csp6I GTAC 1 cut(s) 223
CviJI RGCY 6 cut(s) 37, 43, 54, 152, 268, 290
CviKI_1 RGCY 6 cut(s) 37, 43, 54, 152, 268, 290
CviQI GTAC 1 cut(s) 223
DdeI CTNAG 2 cut(s) 44, 240
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 3 cut(s) 14, 257, 306
EcoO109I RGGNCCY 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 37
EcoT14I CCWWGG 1 cut(s) 302
EcoT38I GRGCYC 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 302
FaiI YATR 1 cut(s) 275
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 3 cut(s) 200, 303, 310
GluI GCNGC 1 cut(s) 150
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 106
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 4 cut(s) 79, 166, 248, 280
HpyCH4V TGCA 2 cut(s) 149, 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 296
HpyF3I CTNAG 2 cut(s) 44, 240
LguI GCTCTTC 1 cut(s) 61
LmnI GCTCC 2 cut(s) 157, 304
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 273
MaeI CTAG 3 cut(s) 200, 303, 310
MaeIII GTNAC 1 cut(s) 67
MboII GAAGA 2 cut(s) 48, 225
MhlI GDGCHC 1 cut(s) 45
MmeI TCCRAC 1 cut(s) 235
MroXI GAANNNNTTC 2 cut(s) 102, 269
MseI TTAA 3 cut(s) 20, 87, 173
MslI CAYNNNNRTG 1 cut(s) 278
MspR9I CCNGG 1 cut(s) 39
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 155, 296
NlaIV GGNNCC 2 cut(s) 137, 259
NmuCI GTSAC 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 61
PdmI GAANNNNTTC 2 cut(s) 102, 269
PkrI GCNGC 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 306
PshBI ATTAAT 1 cut(s) 20
Psp5II RGGWCCY 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 2 cut(s) 137, 259
PspPI GGNCC 3 cut(s) 14, 257, 306
PspPPI RGGWCCY 1 cut(s) 306
PstI CTGCAG 1 cut(s) 160
PstNI CAGNNNCTG 3 cut(s) 155, 164, 268
RsaI GTAC 1 cut(s) 224
RsaNI GTAC 1 cut(s) 223
RseI CAYNNNNRTG 1 cut(s) 278
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 3 cut(s) 20, 87, 173
SatI GCNGC 1 cut(s) 150
Sau96I GGNCC 3 cut(s) 14, 257, 306
SbfI CCTGCAGG 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 39
SdaI CCTGCAGG 1 cut(s) 160
SduI GDGCHC 1 cut(s) 45
SetI ASST 7 cut(s) 12, 56, 154, 201, 270, 292, 308
SfaNI GCATC 1 cut(s) 273
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 3 cut(s) 14, 257, 306
SmiMI CAYNNNNRTG 1 cut(s) 278
Sse8387I CCTGCAGG 1 cut(s) 160
SspMI CTAG 3 cut(s) 200, 303, 310
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 302
TaaI ACNGT 4 cut(s) 79, 166, 248, 280
Tru1I TTAA 3 cut(s) 20, 87, 173
Tru9I TTAA 3 cut(s) 20, 87, 173
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 1 cut(s) 262
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 3 cut(s) 14, 257, 306
VspI ATTAAT 1 cut(s) 20
XmaJI CCTAGG 1 cut(s) 302
XmnI GAANNNNTTC 2 cut(s) 102, 269
XspI CTAG 3 cut(s) 200, 303, 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.