Rh2DG530700

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000318
Physical Location & Seq
Reverse (-)
75921960 .. 75926284
4325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG530700.1

Sequence Viewer

Length: 498 bp
ATGATTCAATCCCCTTCCAGATCTCAAATTCAATCCCTTAGTCGAACATTCAAACCCAGCCTTCAAGTCTCTTCGTCCTCCTCCGCCGCCGCTGCAAGTCTCTTTCAAGCAATCCAAATCTCCAACTTTGTCCTTGCCATTCTAGCAATTGTTGCCCCTTCAATTTTGGCCACAGATTTTATCGTTGGCGATGACAAAGGTTGGACCATTAATGTTGATTACCGAGCCTGGGCTCAGGGAAAGCTCTTCGTTATCGGTGACAACCTCGTTTTTAACTACCCAGAAGGAGTTCACAATGTTCTCAAAGTGAATGGAACTGGGTTCCAAGAATGTGCAGCTCCTGCAGGCACTGTGGTATTAACAAGTGGAAAGGATGTGATAAACCTAGCAACCACAGGAAGAAAATGGTACATTTGTGGTGTTTCTAAGCACCGTCAAGTTGGACCCCAGAAACTGTTCATAACTGTGATGCCAGCTTCCTTTGCTCCTAGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

165

Amino Acids

17.69

Weight (kDa)

9.64

Isoelectric Point (pI)

41.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 68 - 148 3.5e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 84, 87, 90
AcoI YGGCCR 1 cut(s) 168
AcsI RAATTY 1 cut(s) 27
AfaI GTAC 1 cut(s) 410
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 6 cut(s) 8, 32, 52, 65, 107, 162
AjnI CCWGG 1 cut(s) 227
AluBI AGCT 3 cut(s) 244, 338, 476
AluI AGCT 3 cut(s) 244, 338, 476
Alw26I GTCTC 2 cut(s) 73, 104
AlwNI CAGNNNCTG 3 cut(s) 341, 350, 454
AoxI GGCC 1 cut(s) 168
ApeKI GCWGC 2 cut(s) 92, 335
ApoI RAATTY 1 cut(s) 27
AseI ATTAAT 1 cut(s) 210
Asp700I GAANNNNTTC 2 cut(s) 288, 455
AspA2I CCTAGG 1 cut(s) 488
AspS9I GGNCC 3 cut(s) 204, 443, 492
AsuHPI GGTGA 1 cut(s) 269
AvaII GGWCC 3 cut(s) 204, 443, 492
AvrII CCTAGG 1 cut(s) 488
BaeI ACNNNNGTAYC 2 cut(s) 400, 433
BalI TGGCCA 1 cut(s) 170
BanII GRGCYC 1 cut(s) 235
BbvI GCAGC 2 cut(s) 79, 347
BciT130I CCWGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 73, 104
BfaI CTAG 4 cut(s) 143, 386, 489, 496
BfmI CTRYAG 1 cut(s) 342
BglII AGATCT 1 cut(s) 20
BisI GCNGC 4 cut(s) 87, 90, 93, 336
BlnI CCTAGG 1 cut(s) 488
BlsI GCNGC 4 cut(s) 88, 91, 94, 337
Bme1390I CCNGG 1 cut(s) 229
Bme18I GGWCC 3 cut(s) 204, 443, 492
BmgT120I GGNCC 3 cut(s) 204, 443, 492
BmiI GGNNCC 2 cut(s) 323, 445
BmrFI CCNGG 1 cut(s) 229
BmrI ACTGGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 459
BmuI ACTGGG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 228, 488
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse1I ACTGG 1 cut(s) 322
BseBI CCWGG 1 cut(s) 229
BseDI CCNNGG 2 cut(s) 228, 488
BseGI GGATG 1 cut(s) 379
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMII CTCAG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 70
BseXI GCAGC 2 cut(s) 79, 347
BseYI CCCAGC 1 cut(s) 56
BsgI GTGCAG 1 cut(s) 354
BshFI GGCC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 73, 104
BsnI GGCC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 235
Bsp143I GATC 1 cut(s) 20
BspACI CCGC 3 cut(s) 84, 87, 90
BspANI GGCC 1 cut(s) 170
BspCNI CTCAG 1 cut(s) 247
BspLI GGNNCC 2 cut(s) 323, 445
BspMAI CTGCAG 1 cut(s) 346
BspQI GCTCTTC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 322
BssECI CCNNGG 2 cut(s) 228, 488
BssMI GATC 1 cut(s) 20
BssT1I CCWWGG 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 229
Bst4CI ACNGT 4 cut(s) 352, 434, 456, 466
Bst6I CTCTTC 2 cut(s) 76, 251
BstAPI GCANNNNNTGC 2 cut(s) 152, 341
BstC8I GCNNGC 2 cut(s) 346, 474
BstDEI CTNAG 3 cut(s) 38, 234, 426
BstF5I GGATG 1 cut(s) 379
BstKTI GATC 1 cut(s) 23
BstMAI GTCTC 2 cut(s) 73, 104
BstMBI GATC 1 cut(s) 20
BstMWI GCNNNNNNNGC 5 cut(s) 92, 143, 152, 341, 482
BstNI CCWGG 1 cut(s) 229
BstSCI CCNGG 1 cut(s) 227
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 79, 347
BstX2I RGATCY 1 cut(s) 20
BstYI RGATCY 1 cut(s) 20
BsuRI GGCC 1 cut(s) 170
BtgZI GCGATG 1 cut(s) 204
BtsCI GGATG 1 cut(s) 379
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 346, 474
CaiI CAGNNNCTG 3 cut(s) 341, 350, 454
Cfr13I GGNCC 3 cut(s) 204, 443, 492
Csp6I GTAC 1 cut(s) 409
CviJI RGCY 7 cut(s) 60, 170, 227, 233, 244, 338, 476
CviKI_1 RGCY 7 cut(s) 60, 170, 227, 233, 244, 338, 476
CviQI GTAC 1 cut(s) 409
DdeI CTNAG 3 cut(s) 38, 234, 426
DpnI GATC 1 cut(s) 22
DpnII GATC 1 cut(s) 20
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 2 cut(s) 76, 251
EarI CTCTTC 2 cut(s) 76, 251
EciI GGCGGA 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 488
Eco24I GRGCYC 1 cut(s) 235
Eco47I GGWCC 3 cut(s) 204, 443, 492
EcoO109I RGGNCCY 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 227
EcoT14I CCWWGG 1 cut(s) 488
EcoT38I GRGCYC 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 488
FaiI YATR 1 cut(s) 461
Fnu4HI GCNGC 4 cut(s) 87, 90, 93, 336
FokI GGATG 1 cut(s) 386
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 4 cut(s) 87, 90, 93, 336
FspBI CTAG 4 cut(s) 143, 386, 489, 496
GluI GCNGC 4 cut(s) 87, 90, 93, 336
GsaI CCCAGC 1 cut(s) 60
HaeIII GGCC 1 cut(s) 170
HinfI GANTC 1 cut(s) 4
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 1 cut(s) 292
Hpy188III TCNNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 292
HpyAV CCTTC 4 cut(s) 24, 71, 168, 278
HpyCH4III ACNGT 4 cut(s) 352, 434, 456, 466
HpyCH4V TGCA 3 cut(s) 95, 335, 344
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 143, 152, 341, 482
HpyF3I CTNAG 3 cut(s) 38, 234, 426
Kzo9I GATC 1 cut(s) 20
LguI GCTCTTC 1 cut(s) 251
LmnI GCTCC 2 cut(s) 343, 490
Lsp1109I GCAGC 2 cut(s) 79, 347
LweI GCATC 1 cut(s) 459
MaeI CTAG 4 cut(s) 143, 386, 489, 496
MaeIII GTNAC 1 cut(s) 257
MalI GATC 1 cut(s) 22
MboI GATC 1 cut(s) 20
MboII GAAGA 3 cut(s) 63, 238, 411
MfeI CAATTG 1 cut(s) 147
MflI RGATCY 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 235
MlsI TGGCCA 1 cut(s) 170
MluCI AATT 3 cut(s) 27, 147, 162
MluNI TGGCCA 1 cut(s) 170
MmeI TCCRAC 3 cut(s) 147, 182, 421
MnlI CCTC 3 cut(s) 88, 91, 275
Mox20I TGGCCA 1 cut(s) 170
MroXI GAANNNNTTC 2 cut(s) 288, 455
MscI TGGCCA 1 cut(s) 170
MseI TTAA 3 cut(s) 210, 273, 359
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 1 cut(s) 170
MspA1I CMGCKG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 229
MunI CAATTG 1 cut(s) 147
MvaI CCWGG 1 cut(s) 229
MwoI GCNNNNNNNGC 5 cut(s) 92, 143, 152, 341, 482
NdeII GATC 1 cut(s) 20
NlaIV GGNNCC 2 cut(s) 323, 445
NmuCI GTSAC 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 251
PdmI GAANNNNTTC 2 cut(s) 288, 455
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 4 cut(s) 88, 91, 94, 337
PpuMI RGGWCCY 1 cut(s) 492
PshBI ATTAAT 1 cut(s) 210
Psp5II RGGWCCY 1 cut(s) 492
Psp6I CCWGG 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 1 cut(s) 227
PspN4I GGNNCC 2 cut(s) 323, 445
PspPI GGNCC 3 cut(s) 204, 443, 492
PspPPI RGGWCCY 1 cut(s) 492
PstI CTGCAG 1 cut(s) 346
PstNI CAGNNNCTG 3 cut(s) 341, 350, 454
PsuI RGATCY 1 cut(s) 20
RsaI GTAC 1 cut(s) 410
RsaNI GTAC 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 464
SapI GCTCTTC 1 cut(s) 251
SaqAI TTAA 3 cut(s) 210, 273, 359
SatI GCNGC 4 cut(s) 87, 90, 93, 336
Sau3AI GATC 1 cut(s) 20
Sau96I GGNCC 3 cut(s) 204, 443, 492
SbfI CCTGCAGG 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 229
SdaI CCTGCAGG 1 cut(s) 346
SduI GDGCHC 1 cut(s) 235
SetI ASST 7 cut(s) 202, 246, 267, 340, 387, 478, 494
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 3 cut(s) 204, 443, 492
SmiMI CAYNNNNRTG 1 cut(s) 464
Sse8387I CCTGCAGG 1 cut(s) 346
Sse9I AATT 3 cut(s) 27, 147, 162
SsiI CCGC 3 cut(s) 84, 87, 90
SspMI CTAG 4 cut(s) 143, 386, 489, 496
StyD4I CCNGG 1 cut(s) 227
StyI CCWWGG 1 cut(s) 488
TaaI ACNGT 4 cut(s) 352, 434, 456, 466
TaqI TCGA 1 cut(s) 43
TasI AATT 3 cut(s) 27, 147, 162
TauI GCSGC 2 cut(s) 89, 92
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 210, 273, 359
Tru9I TTAA 3 cut(s) 210, 273, 359
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 2 cut(s) 92, 335
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 1 cut(s) 448
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 3 cut(s) 204, 443, 492
VspI ATTAAT 1 cut(s) 210
XapI RAATTY 1 cut(s) 27
XmaJI CCTAGG 1 cut(s) 488
XmnI GAANNNNTTC 2 cut(s) 288, 455
XspI CTAG 4 cut(s) 143, 386, 489, 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.