Rh4BG414400

electron transfer activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000318
Physical Location & Seq
Reverse (-)
56218372 .. 56218934
563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG414400.1

Sequence Viewer

Length: 456 bp
ATGGCTTCGAACAAACTTGTGACCTTAATCGCCGCTGTTCTGATTCTTCTCCCTGCGATCGCCATGGCGAAAGATATCGTCGTCGGAGACGATAGCGGGTGGAAGCTGAATTTCGATTACCAAGCTTGGGCCAAGGACAAAGTATTTCAAGTTGGTGATACACTAGTGTTCAAGTATAAACCTCCTACTCACAATGTGTACAAGGTGGACGGAGCTGGGTTCAAGGATTGCACTAAACCGGCAGCAAACGAAGCATTGACTAGTGGAAATGACAAAGTAGAACTGAAAGCCGCCGGAAAGAAATGGTACATTTGCGGCGTTTCCGATCACTGTGATCAGGGGATGAAGCTTACCCTTAACGTTACGGAGAAGTCTTCTGCGGCTCGTGGGATCATCTTCCCCCGAAGCCAAGTCTTCGGGGTCGCCATCTTTGCCATCGTAGCAATTGTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

151

Amino Acids

16.32

Weight (kDa)

8.94

Isoelectric Point (pI)

14.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 115 1.6e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 33, 96, 291, 315, 380
AclI AACGTT 1 cut(s) 360
AclWI GGATC 1 cut(s) 398
AcsI RAATTY 1 cut(s) 109
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 200, 308
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 3 cut(s) 149, 172, 223
AhlI ACTAGT 2 cut(s) 163, 260
AluBI AGCT 4 cut(s) 106, 125, 215, 349
AluI AGCT 4 cut(s) 106, 125, 215, 349
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 398
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 242
ApoI RAATTY 1 cut(s) 109
AsiSI GCGATCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 167
AsuII TTCGAA 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 150, 183
BauI CACGAG 1 cut(s) 384
BbsI GAAGAC 2 cut(s) 366, 406
BbvI GCAGC 1 cut(s) 254
BccI CCATC 2 cut(s) 434, 443
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 81
BcuI ACTAGT 2 cut(s) 163, 260
BfaI CTAG 2 cut(s) 164, 261
BisI GCNGC 5 cut(s) 33, 243, 291, 316, 381
BlsI GCNGC 5 cut(s) 34, 244, 292, 317, 382
BmgT120I GGNCC 1 cut(s) 129
BpiI GAAGAC 2 cut(s) 366, 406
Bpu14I TTCGAA 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 63, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 238
BseDI CCNNGG 2 cut(s) 63, 132
BseGI GGATG 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 127
BseXI GCAGC 1 cut(s) 254
BseYI CCCAGC 1 cut(s) 215
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 2 cut(s) 239, 294
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 4 cut(s) 57, 325, 334, 390
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 5 cut(s) 33, 96, 291, 315, 380
BspANI GGCC 1 cut(s) 131
BspPI GGATC 1 cut(s) 398
BspT104I TTCGAA 1 cut(s) 8
BsrFI RCCGGY 1 cut(s) 238
BsrGI TGTACA 1 cut(s) 198
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 63, 132
BssMI GATC 4 cut(s) 57, 325, 334, 390
BssSI CACGAG 1 cut(s) 384
BssT1I CCWWGG 2 cut(s) 63, 132
Bst2BI CACGAG 1 cut(s) 384
Bst4CI ACNGT 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 348
BstKTI GATC 4 cut(s) 60, 328, 337, 393
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 4 cut(s) 57, 325, 334, 390
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 3 cut(s) 251, 431, 440
BstV1I GCAGC 1 cut(s) 254
BstV2I GAAGAC 2 cut(s) 366, 406
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 129
Csp6I GTAC 2 cut(s) 199, 307
CviAII CATG 1 cut(s) 64
CviJI RGCY 9 cut(s) 5, 106, 125, 131, 215, 290, 349, 383, 408
CviKI_1 RGCY 9 cut(s) 5, 106, 125, 131, 215, 290, 349, 383, 408
CviQI GTAC 2 cut(s) 199, 307
DpnI GATC 4 cut(s) 59, 327, 336, 392
DpnII GATC 4 cut(s) 57, 325, 334, 390
DraIII CACNNNGTG 1 cut(s) 196
Eco130I CCWWGG 2 cut(s) 63, 132
Eco32I GATATC 1 cut(s) 76
EcoRV GATATC 1 cut(s) 76
EcoT14I CCWWGG 2 cut(s) 63, 132
ErhI CCWWGG 2 cut(s) 63, 132
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 65, 177
FatI CATG 1 cut(s) 63
FauI CCCGC 1 cut(s) 89
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 5 cut(s) 33, 243, 291, 316, 381
FokI GGATG 1 cut(s) 355
Fsp4HI GCNGC 5 cut(s) 33, 243, 291, 316, 381
FspBI CTAG 2 cut(s) 164, 261
GluI GCNGC 5 cut(s) 33, 243, 291, 316, 381
GsaI CCCAGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 131
HapII CCGG 2 cut(s) 239, 294
Hin1II CATG 1 cut(s) 67
HindIII AAGCTT 2 cut(s) 123, 347
HinfI GANTC 1 cut(s) 43
HpaII CCGG 2 cut(s) 239, 294
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 2 cut(s) 199, 208
Hpy188I TCNGA 3 cut(s) 42, 86, 325
Hpy8I GTNNAC 2 cut(s) 199, 208
Hpy99I CGWCG 2 cut(s) 83, 86
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 1 cut(s) 231
HpyF10VI GCNNNNNNNGC 3 cut(s) 251, 431, 440
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 4 cut(s) 57, 325, 334, 390
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 5 cut(s) 66, 201, 252, 307, 323
Lsp1109I GCAGC 1 cut(s) 254
MaeI CTAG 2 cut(s) 164, 261
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 2 cut(s) 19, 361
MalI GATC 4 cut(s) 59, 327, 336, 392
MboI GATC 4 cut(s) 57, 325, 334, 390
MboII GAAGA 4 cut(s) 38, 366, 388, 406
MfeI CAATTG 1 cut(s) 444
MluCI AATT 2 cut(s) 109, 444
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 1 cut(s) 192
MseI TTAA 2 cut(s) 26, 357
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 2 cut(s) 239, 294
MunI CAATTG 1 cut(s) 444
MwoI GCNNNNNNNGC 3 cut(s) 251, 431, 440
NcoI CCATGG 1 cut(s) 63
NdeII GATC 4 cut(s) 57, 325, 334, 390
NlaIII CATG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 5 cut(s) 34, 244, 292, 317, 382
Ple19I CGATCG 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 360
PspFI CCCAGC 1 cut(s) 215
PspPI GGNCC 1 cut(s) 129
PvuI CGATCG 1 cut(s) 60
RgaI GCGATCGC 1 cut(s) 60
RsaI GTAC 2 cut(s) 200, 308
RsaNI GTAC 2 cut(s) 199, 307
SaqAI TTAA 2 cut(s) 26, 357
SatI GCNGC 5 cut(s) 33, 243, 291, 316, 381
Sau3AI GATC 4 cut(s) 57, 325, 334, 390
Sau96I GGNCC 1 cut(s) 129
SetI ASST 8 cut(s) 26, 108, 127, 184, 207, 217, 351, 363
SfaAI GCGATCGC 1 cut(s) 60
SfuI TTCGAA 1 cut(s) 8
SgfI GCGATCGC 1 cut(s) 60
SpeI ACTAGT 2 cut(s) 163, 260
Sse9I AATT 2 cut(s) 109, 444
SsiI CCGC 5 cut(s) 33, 96, 291, 315, 380
SspMI CTAG 2 cut(s) 164, 261
StyI CCWWGG 2 cut(s) 63, 132
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 363
TaqI TCGA 2 cut(s) 8, 114
TasI AATT 2 cut(s) 109, 444
TatI WGTACW 1 cut(s) 198
TauI GCSGC 4 cut(s) 35, 293, 318, 383
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 2 cut(s) 26, 357
Tru9I TTAA 2 cut(s) 26, 357
TscAI CASTG 1 cut(s) 335
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 359
TspGWI ACGGA 2 cut(s) 225, 380
TspRI CASTG 1 cut(s) 335
XapI RAATTY 1 cut(s) 109
XspI CTAG 2 cut(s) 164, 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.