MD12G1007700.v1.1

Stellacyanin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0000318
Physical Location & Seq
Reverse (-)
829993 .. 831277
1285 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1007700.v1.1.491

Sequence Viewer

Length: 468 bp
ATGGGTTCGAACAAATTTGTCACCCTAATTTCCATTCTCGTGATTCTTCTTCCTACACTGTCCATGGCAAAAGAGTTCGTCGTCGGAGATGATAGCGGCTGGAGAACGGATTTTGATTACCAAAAGTGGGCTAAAGGCAAAGTATTTCGAGTTGGTGATACATTGGTGTTCAAGTACAAGGCTCCTAATCACAACGTGTTCAAGGTGGACGGAGCTGGGTTCAAGGAATGCACTAAACCAACGGAAAATGATAAAGCACCACTTACCTCTGGGAATGACAAAATAAAGCTAACGACTGCTGGAAACAAATGGTACATTTGTTCAGTTAGCAACCACTGTGCTGATAAGGGGATGAAGCTTTTCATTACCGTTGCAGACGAATCATCTGCTGCTCGTAGCCTCATATGGTCTGGATCGTACCAAGTCTTCATCGCCACTGTCATTGCAATCGTGGCAATTGTAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

156

Amino Acids

17.02

Weight (kDa)

9.12

Isoelectric Point (pI)

16.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 114 2.2e-24 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AclWI GGATC 1 cut(s) 421
AcsI RAATTY 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 3 cut(s) 176, 314, 419
AfiI CCNNNNNNNGG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 172, 202, 223
AluBI AGCT 3 cut(s) 215, 289, 358
AluI AGCT 3 cut(s) 215, 289, 358
AlwI GGATC 1 cut(s) 421
ApeKI GCWGC 1 cut(s) 389
ApoI RAATTY 1 cut(s) 14
Asp700I GAANNNNTTC 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 13, 167
AsuII TTCGAA 1 cut(s) 8
BaeI ACNNNNGTAYC 4 cut(s) 150, 183, 304, 337
BarI GAAGNNNNNNTAC 2 cut(s) 410, 442
BauI CACGAG 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 418
BbvI GCAGC 1 cut(s) 376
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BisI GCNGC 2 cut(s) 97, 390
BlsI GCNGC 2 cut(s) 98, 391
BmiI GGNNCC 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 418
BpmI CTGGAG 1 cut(s) 121
Bpu14I TTCGAA 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse3DI GCAATG 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 441
BseXI GCAGC 1 cut(s) 376
BseYI CCCAGC 1 cut(s) 215
BslI CCNNNNNNNGG 1 cut(s) 127
BsmI GAATGC 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 1 cut(s) 413
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 183
BspPI GGATC 1 cut(s) 421
BspT104I TTCGAA 1 cut(s) 8
BsrDI GCAATG 1 cut(s) 441
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 1 cut(s) 413
BssSI CACGAG 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 63
Bst2BI CACGAG 1 cut(s) 38
Bst4CI ACNGT 4 cut(s) 60, 338, 370, 439
BstBI TTCGAA 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 1 cut(s) 416
BstMBI GATC 1 cut(s) 413
BstMWI GCNNNNNNNGC 1 cut(s) 452
BstV1I GCAGC 1 cut(s) 376
BstV2I GAAGAC 1 cut(s) 418
BtgI CCRYGG 1 cut(s) 63
BtgZI GCGATG 1 cut(s) 415
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 3 cut(s) 56, 334, 435
Csp6I GTAC 3 cut(s) 175, 313, 418
CspCI CAANNNNNGTGG 2 cut(s) 424, 459
CviAII CATG 1 cut(s) 64
CviJI RGCY 7 cut(s) 99, 131, 182, 215, 289, 358, 399
CviKI_1 RGCY 7 cut(s) 99, 131, 182, 215, 289, 358, 399
CviQI GTAC 3 cut(s) 175, 313, 418
DpnI GATC 1 cut(s) 415
DpnII GATC 1 cut(s) 413
DraIII CACNNNGTG 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 63
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 1 cut(s) 67
FaiI YATR 3 cut(s) 65, 404, 406
FalI AAGNNNNNCTT 2 cut(s) 246, 278
FatI CATG 1 cut(s) 63
FauNDI CATATG 1 cut(s) 404
Fnu4HI GCNGC 2 cut(s) 97, 390
FokI GGATG 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 97, 390
GluI GCNGC 2 cut(s) 97, 390
GsaI CCCAGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 121
Hin1II CATG 1 cut(s) 67
HindIII AAGCTT 1 cut(s) 356
HinfI GANTC 2 cut(s) 43, 380
HphI GGTGA 2 cut(s) 13, 167
Hpy166II GTNNAC 1 cut(s) 208
Hpy188I TCNGA 2 cut(s) 86, 467
Hpy188III TCNNGA 2 cut(s) 40, 411
Hpy8I GTNNAC 1 cut(s) 208
Hpy99I CGWCG 2 cut(s) 83, 86
HpyCH4III ACNGT 4 cut(s) 60, 338, 370, 439
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 3 cut(s) 231, 374, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 452
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 1 cut(s) 413
LmnI GCTCC 2 cut(s) 187, 212
LpnPI CCDG 5 cut(s) 85, 201, 255, 285, 396
Lsp1109I GCAGC 1 cut(s) 376
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 19
MalI GATC 1 cut(s) 415
MboI GATC 1 cut(s) 413
MboII GAAGA 3 cut(s) 38, 41, 418
MfeI CAATTG 1 cut(s) 456
MluCI AATT 3 cut(s) 14, 27, 456
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 2 cut(s) 277, 410
MroXI GAANNNNTTC 1 cut(s) 359
MslI CAYNNNNRTG 1 cut(s) 38
MunI CAATTG 1 cut(s) 456
Mva1269I GAATGC 1 cut(s) 233
MwoI GCNNNNNNNGC 1 cut(s) 452
NcoI CCATGG 1 cut(s) 63
NdeI CATATG 1 cut(s) 404
NdeII GATC 1 cut(s) 413
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 8
PctI GAATGC 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 359
PfeI GAWTC 2 cut(s) 43, 380
PkrI GCNGC 2 cut(s) 98, 391
PspFI CCCAGC 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 183
RsaI GTAC 3 cut(s) 176, 314, 419
RsaNI GTAC 3 cut(s) 175, 313, 418
RseI CAYNNNNRTG 1 cut(s) 38
SatI GCNGC 2 cut(s) 97, 390
Sau3AI GATC 1 cut(s) 413
SetI ASST 6 cut(s) 198, 207, 217, 269, 291, 360
SfuI TTCGAA 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 38
Sse9I AATT 3 cut(s) 14, 27, 456
SsiI CCGC 1 cut(s) 96
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 4 cut(s) 60, 338, 370, 439
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 8, 148
TasI AATT 3 cut(s) 14, 27, 456
TatI WGTACW 1 cut(s) 174
TauI GCSGC 1 cut(s) 99
TfiI GAWTC 2 cut(s) 43, 380
TscAI CASTG 3 cut(s) 63, 341, 442
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 3 cut(s) 352, 368, 418
TspGWI ACGGA 3 cut(s) 122, 225, 257
TspRI CASTG 3 cut(s) 63, 341, 442
XapI RAATTY 1 cut(s) 14
XmnI GAANNNNTTC 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.