MD14G1005400.v1.1

Stellacyanin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000318
Physical Location & Seq
Reverse (-)
581041 .. 581844
804 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1005400.v1.1.491

Sequence Viewer

Length: 483 bp
ATGGCTTCCAACAAATTTGTCACCCTAGTTACCCTTGTTGTAGTCCTTCTTCCTACAATCGCCATGGCAACGGACTATGTCGTCGGAGGTGATAGCGGCTGGAACACTGGTGTTGATTATTCAGCGTGGGCCAAGGACAAAATGTTTCATGTTGGTGATGCACTAGTGTTCAAGTACACGAACCCACCCCACAATGTGTTCAAGGTGAACGGAACTGGGTTCAATGCATGTGTTAAACCAACAGAAAATGATCAACCACCACTTACATCTGGAAACGACAGAATAGAGCTAAAGACTCCCGGAAACAAATGGTACATTTGTGCAGCTGCCGATCACTGTAAATCGGGACAGAGGCTTGTTATTACTGTTATGGACACCGCACCTGCATCTCCTCCATCCTCCGCCGTTCGCGGGATCATCATTTCTGGATACCAAGTCTTCGCCGCCGCCGTCGTCGGACTCTTCCTTGCTATTGCAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

161

Amino Acids

16.98

Weight (kDa)

7.71

Isoelectric Point (pI)

22.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 117 6.5e-23 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 391
AasI GACNNNNNNGTC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 391
AccII CGCG 1 cut(s) 411
AciI CCGC 6 cut(s) 96, 378, 402, 411, 444, 447
AclWI GGATC 1 cut(s) 422
AcsI RAATTY 1 cut(s) 14
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 2 cut(s) 176, 314
AfiI CCNNNNNNNGG 1 cut(s) 411
AgsI TTSAA 3 cut(s) 172, 202, 223
AhlI ACTAGT 1 cut(s) 163
AluBI AGCT 2 cut(s) 289, 326
AluI AGCT 2 cut(s) 289, 326
AlwI GGATC 1 cut(s) 422
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 3 cut(s) 323, 326, 476
ApoI RAATTY 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 129
AsuC2I CCSGG 1 cut(s) 300
AsuHPI GGTGA 4 cut(s) 13, 101, 167, 217
BaeI ACNNNNGTAYC 2 cut(s) 304, 337
BarI GAAGNNNNNNTAC 2 cut(s) 33, 65
BbsI GAAGAC 1 cut(s) 430
BbvI GCAGC 2 cut(s) 313, 335
BccI CCATC 1 cut(s) 403
BceAI ACGGC 2 cut(s) 389, 434
BciVI GTATCC 1 cut(s) 422
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 1 cut(s) 300
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 2 cut(s) 26, 164
BfuAI ACCTGC 1 cut(s) 391
BfuI GTATCC 1 cut(s) 422
BisI GCNGC 6 cut(s) 97, 324, 327, 444, 447, 477
BlsI GCNGC 6 cut(s) 98, 325, 328, 445, 448, 478
Bme1390I CCNGG 1 cut(s) 300
BmgT120I GGNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 300
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 2 cut(s) 148, 395
BmuI ACTGGG 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 430
BpuMI CCSGG 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 63, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 2 cut(s) 112, 220
BseDI CCNNGG 2 cut(s) 63, 132
BseGI GGATG 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 411
BseNI ACTGG 2 cut(s) 112, 220
BseRI GAGGAG 1 cut(s) 381
BseXI GCAGC 2 cut(s) 313, 335
BsgI GTGCAG 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 411
BshFI GGCC 1 cut(s) 131
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 411
BsmFI GGGAC 1 cut(s) 360
BsnI GGCC 1 cut(s) 131
Bsp143I GATC 3 cut(s) 250, 331, 414
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 6 cut(s) 96, 378, 402, 411, 444, 447
BspANI GGCC 1 cut(s) 131
BspFNI CGCG 1 cut(s) 411
BspMI ACCTGC 1 cut(s) 391
BspPI GGATC 1 cut(s) 422
BsrI ACTGG 2 cut(s) 112, 220
BssECI CCNNGG 2 cut(s) 63, 132
BssMI GATC 3 cut(s) 250, 331, 414
BssT1I CCWWGG 2 cut(s) 63, 132
Bst4CI ACNGT 2 cut(s) 338, 367
Bst6I CTCTTC 1 cut(s) 467
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 395
BstFNI CGCG 1 cut(s) 411
BstKTI GATC 3 cut(s) 253, 334, 417
BstMBI GATC 3 cut(s) 250, 331, 414
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstNSI RCATGY 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 298
BstUI CGCG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 313, 335
BstV2I GAAGAC 1 cut(s) 430
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 395
BtsIMutI CAGTG 2 cut(s) 105, 334
BveI ACCTGC 1 cut(s) 391
Cfr13I GGNCC 1 cut(s) 129
Csp6I GTAC 2 cut(s) 175, 313
CviAII CATG 3 cut(s) 64, 149, 228
CviJI RGCY 7 cut(s) 5, 99, 131, 289, 326, 355, 479
CviKI_1 RGCY 7 cut(s) 5, 99, 131, 289, 326, 355, 479
CviQI GTAC 2 cut(s) 175, 313
DpnI GATC 3 cut(s) 252, 333, 416
DpnII GATC 3 cut(s) 250, 331, 414
DraIII CACNNNGTG 1 cut(s) 196
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
EciI GGCGGA 1 cut(s) 391
Eco130I CCWWGG 2 cut(s) 63, 132
EcoT14I CCWWGG 2 cut(s) 63, 132
EcoT22I ATGCAT 1 cut(s) 229
ErhI CCWWGG 2 cut(s) 63, 132
FaeI CATG 3 cut(s) 67, 152, 231
FaiI YATR 5 cut(s) 65, 78, 150, 229, 371
FaqI GGGAC 1 cut(s) 360
FatI CATG 3 cut(s) 63, 148, 227
FauI CCCGC 1 cut(s) 404
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 6 cut(s) 97, 324, 327, 444, 447, 477
FokI GGATG 1 cut(s) 382
Fsp4HI GCNGC 6 cut(s) 97, 324, 327, 444, 447, 477
FspBI CTAG 2 cut(s) 26, 164
GluI GCNGC 6 cut(s) 97, 324, 327, 444, 447, 477
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 300
Hin1II CATG 3 cut(s) 67, 152, 231
HinfI GANTC 2 cut(s) 295, 459
HpaII CCGG 1 cut(s) 300
HphI GGTGA 4 cut(s) 13, 101, 167, 217
Hpy166II GTNNAC 2 cut(s) 177, 208
Hpy188I TCNGA 2 cut(s) 86, 458
Hpy188III TCNNGA 3 cut(s) 270, 345, 426
Hpy8I GTNNAC 2 cut(s) 177, 208
Hpy99I CGWCG 3 cut(s) 86, 455, 458
HpyAV CCTTC 1 cut(s) 56
HpyCH4III ACNGT 2 cut(s) 338, 367
HpyCH4V TGCA 5 cut(s) 161, 227, 323, 386, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
Hsp92II CATG 3 cut(s) 67, 152, 231
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 3 cut(s) 250, 331, 414
LpnPI CCDG 7 cut(s) 85, 93, 201, 255, 313, 396, 411
Lsp1109I GCAGC 2 cut(s) 313, 335
LweI GCATC 2 cut(s) 148, 395
MaeI CTAG 2 cut(s) 26, 164
MaeIII GTNAC 2 cut(s) 19, 28
MalI GATC 3 cut(s) 252, 333, 416
MboI GATC 3 cut(s) 250, 331, 414
MboII GAAGA 3 cut(s) 41, 430, 454
MluCI AATT 1 cut(s) 14
MlyI GAGTC 2 cut(s) 289, 453
MmeI TCCRAC 3 cut(s) 33, 64, 436
MnlI CCTC 4 cut(s) 80, 345, 402, 409
Mph1103I ATGCAT 1 cut(s) 229
MseI TTAA 1 cut(s) 234
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 326
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 1 cut(s) 300
MvnI CGCG 1 cut(s) 411
MwoI GCNNNNNNNGC 1 cut(s) 476
NciI CCSGG 1 cut(s) 300
NcoI CCATGG 1 cut(s) 63
NdeII GATC 3 cut(s) 250, 331, 414
NlaIII CATG 3 cut(s) 67, 152, 231
NmuCI GTSAC 1 cut(s) 19
NsiI ATGCAT 1 cut(s) 229
NspI RCATGY 1 cut(s) 231
PaqCI CACCTGC 1 cut(s) 391
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PflFI GACNNNGTC 1 cut(s) 77
PfoI TCCNGGA 1 cut(s) 298
PkrI GCNGC 6 cut(s) 98, 325, 328, 445, 448, 478
PleI GAGTC 2 cut(s) 289, 453
PpsI GAGTC 2 cut(s) 289, 453
PspPI GGNCC 1 cut(s) 129
PsyI GACNNNGTC 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 2 cut(s) 176, 314
RsaNI GTAC 2 cut(s) 175, 313
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 6 cut(s) 97, 324, 327, 444, 447, 477
Sau3AI GATC 3 cut(s) 250, 331, 414
Sau96I GGNCC 1 cut(s) 129
SchI GAGTC 2 cut(s) 289, 453
ScrFI CCNGG 1 cut(s) 300
SetI ASST 5 cut(s) 91, 207, 291, 328, 385
SfaNI GCATC 2 cut(s) 148, 395
SmiMI CAYNNNNRTG 1 cut(s) 153
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 1 cut(s) 14
SsiI CCGC 6 cut(s) 96, 378, 402, 411, 444, 447
SspMI CTAG 2 cut(s) 26, 164
StyD4I CCNGG 1 cut(s) 298
StyI CCWWGG 2 cut(s) 63, 132
TaaI ACNGT 2 cut(s) 338, 367
TasI AATT 1 cut(s) 14
TatI WGTACW 1 cut(s) 174
TauI GCSGC 3 cut(s) 99, 446, 449
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 2 cut(s) 112, 341
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 3 cut(s) 323, 326, 476
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 137
TspGWI ACGGA 2 cut(s) 86, 225
TspRI CASTG 2 cut(s) 112, 341
Tth111I GACNNNGTC 1 cut(s) 77
XapI RAATTY 1 cut(s) 14
XceI RCATGY 1 cut(s) 231
XspI CTAG 2 cut(s) 26, 164
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.