pycom04g06640

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000318
Physical Location & Seq
Reverse (-)
6857844 .. 6858471
628 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g06640.2

Sequence Viewer

Length: 519 bp
ATGGCCTCTTCCCATCTATTCAATATCCTTGTCACTCTAGCAATTGTTGCCCCTTGTATTTTGGCTACAGATTTTGTTGTTGGTGACGATAAAGGTTGGACCATTAATTTCGATTACCAAACTTGGGCACAAGGAAAACAGTTGTATGTTGGCGACAAACTTGTTTTTAAGTATCCAAAAGGAGTCCACAATGTTTACAAAGTGAATGGCACTGGATTTCAACAATGTGCAGCTCCATTAGACAGTGTGCCATTAACTAGTGGAAACGACGTGGTCACCCTTGCAACGCCAGGAAGAAAATGGTACATTTGCGGTGTTGGTCAGCATTGTAAAGCGGGGAATCAGAAGCTTCTTATAACTGTGATGCCATCATCTACTCCTAGCCCAAGTCCCAGTTATACTGCCTCAAGCCCTAGCACCTCAATCCCCTACACCTCTGCAGCAATAAGTGTTGGAGCAAGATATGGGTGGATGATGGTTATATTTGGCCTTCTCGCGATAGCTTATATATTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

173

Amino Acids

18.5

Weight (kDa)

8.88

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AccII CGCG 1 cut(s) 497
AciI CCGC 2 cut(s) 312, 335
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 2 cut(s) 22, 221
AhlI ACTAGT 1 cut(s) 257
AjiI CACGTC 1 cut(s) 271
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 3 cut(s) 233, 349, 503
AluI AGCT 3 cut(s) 233, 349, 503
AoxI GGCC 2 cut(s) 3, 487
ApeKI GCWGC 2 cut(s) 230, 440
AseI ATTAAT 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 99
AsuHPI GGTGA 2 cut(s) 95, 268
AvaII GGWCC 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 242, 452
BccI CCATC 3 cut(s) 21, 376, 469
BciT130I CCWGG 1 cut(s) 291
BciVI GTATCC 1 cut(s) 183
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 4 cut(s) 38, 258, 381, 414
BfmI CTRYAG 2 cut(s) 66, 438
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 2 cut(s) 231, 441
BlsI GCNGC 2 cut(s) 232, 442
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 99
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 217, 393
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 477
BseLI CCNNNNNNNGG 1 cut(s) 124
BseNI ACTGG 2 cut(s) 217, 393
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 2 cut(s) 242, 452
BsgI GTGCAG 1 cut(s) 249
Bsh1236I CGCG 1 cut(s) 497
BshFI GGCC 2 cut(s) 5, 489
BslFI GGGAC 1 cut(s) 375
BslI CCNNNNNNNGG 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 375
BsnI GGCC 2 cut(s) 5, 489
Bsp1286I GDGCHC 1 cut(s) 130
Bsp68I TCGCGA 1 cut(s) 497
BspACI CCGC 2 cut(s) 312, 335
BspANI GGCC 2 cut(s) 5, 489
BspFNI CGCG 1 cut(s) 497
BspMAI CTGCAG 1 cut(s) 442
BsrI ACTGG 2 cut(s) 217, 393
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 141, 245, 361
Bst6I CTCTTC 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 47
BstEII GGTNACC 1 cut(s) 274
BstF5I GGATG 1 cut(s) 477
BstFNI CGCG 1 cut(s) 497
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 291
BstPI GGTNACC 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 66, 438
BstSLI GKGCMC 1 cut(s) 130
BstUI CGCG 1 cut(s) 497
BstV1I GCAGC 2 cut(s) 242, 452
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 5, 489
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 210, 250
BtuMI TCGCGA 1 cut(s) 497
Cfr13I GGNCC 1 cut(s) 99
Csp6I GTAC 1 cut(s) 304
CviJI RGCY 8 cut(s) 5, 65, 233, 349, 384, 411, 489, 503
CviKI_1 RGCY 8 cut(s) 5, 65, 233, 349, 384, 411, 489, 503
CviQI GTAC 1 cut(s) 304
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 289
FaiI YATR 7 cut(s) 147, 356, 399, 465, 482, 507, 509
FaqI GGGAC 1 cut(s) 375
FauI CCCGC 1 cut(s) 328
Fnu4HI GCNGC 2 cut(s) 231, 441
FokI GGATG 1 cut(s) 484
Fsp4HI GCNGC 2 cut(s) 231, 441
FspBI CTAG 4 cut(s) 38, 258, 381, 414
GluI GCNGC 2 cut(s) 231, 441
HaeIII GGCC 2 cut(s) 5, 489
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 2 cut(s) 183, 340
HphI GGTGA 2 cut(s) 95, 268
Hpy166II GTNNAC 2 cut(s) 187, 196
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 496
Hpy8I GTNNAC 2 cut(s) 187, 196
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 1 cut(s) 500
HpyCH4III ACNGT 3 cut(s) 141, 245, 361
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 3 cut(s) 230, 284, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 270
LmnI GCTCC 2 cut(s) 238, 455
LpnPI CCDG 4 cut(s) 198, 276, 303, 406
Lsp1109I GCAGC 2 cut(s) 242, 452
LweI GCATC 1 cut(s) 354
MaeI CTAG 4 cut(s) 38, 258, 381, 414
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 3 cut(s) 31, 83, 274
MboII GAAGA 1 cut(s) 306
MfeI CAATTG 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 42, 106
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 2 cut(s) 77, 433
MnlI CCTC 4 cut(s) 16, 415, 430, 445
MseI TTAA 3 cut(s) 105, 168, 254
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 497
MwoI GCNNNNNNNGC 1 cut(s) 47
NmuCI GTSAC 3 cut(s) 31, 83, 274
NruI TCGCGA 1 cut(s) 497
PfeI GAWTC 1 cut(s) 340
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 2 cut(s) 232, 442
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PshBI ATTAAT 1 cut(s) 105
PsiI TTATAA 1 cut(s) 356
Psp6I CCWGG 1 cut(s) 289
PspEI GGTNACC 1 cut(s) 274
PspGI CCWGG 1 cut(s) 289
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 442
PsyI GACNNNGTC 1 cut(s) 272
RruI TCGCGA 1 cut(s) 497
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SaqAI TTAA 3 cut(s) 105, 168, 254
SatI GCNGC 2 cut(s) 231, 441
Sau96I GGNCC 1 cut(s) 99
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 130
SetI ASST 7 cut(s) 97, 235, 273, 351, 422, 437, 505
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 2 cut(s) 66, 438
SinI GGWCC 1 cut(s) 99
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 2 cut(s) 42, 106
SsiI CCGC 2 cut(s) 312, 335
SspMI CTAG 4 cut(s) 38, 258, 381, 414
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 141, 245, 361
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 111
TasI AATT 2 cut(s) 42, 106
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 3 cut(s) 105, 168, 254
Tru9I TTAA 3 cut(s) 105, 168, 254
TscAI CASTG 2 cut(s) 217, 250
TseFI GTSAC 3 cut(s) 31, 83, 274
TseI GCWGC 2 cut(s) 230, 440
Tsp45I GTSAC 3 cut(s) 31, 83, 274
TspRI CASTG 2 cut(s) 217, 250
Tth111I GACNNNGTC 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 99
VspI ATTAAT 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XspI CTAG 4 cut(s) 38, 258, 381, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.