Rw2G041810

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000318
Physical Location & Seq
Reverse (-)
68007873 .. 68009004
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G041810.1

Sequence Viewer

Length: 333 bp
ATGGCGTTAGATTTTATCGTTGGCGATGACAAAGGTTGGACCATTAATGTTGATTACCGAGCCTGGGCTCAGGGAAAGCTCTTCGTTATCGGTGACAACCTCGTTTTTAACTACCCAGAAGGAGTTCACAATGTTCTCAAAGTGAATGGAACTGGGTTCCAAGAATGTGCAGCTCCTGCAGGCACTGTGGTATTAACAAGCGGAAAGGATGTGATAAACCTAGCAACCACAGGAAGAAAATGGTACATTTGTGGTGTTTCTAAGCACCGTCAAGTTGGACCCCAGAAGCTGTTCATAACTGTGATGCCAGCTTCCTTTGCTCCTAGGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

110

Amino Acids

12.0

Weight (kDa)

9.03

Isoelectric Point (pI)

18.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 13 - 93 1.1e-22 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 201
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 64
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 4 cut(s) 79, 173, 289, 311
AluI AGCT 4 cut(s) 79, 173, 289, 311
AlwNI CAGNNNCTG 3 cut(s) 176, 185, 289
AoxI GGCC 1 cut(s) 326
ApeKI GCWGC 1 cut(s) 170
AseI ATTAAT 1 cut(s) 45
Asp700I GAANNNNTTC 2 cut(s) 123, 290
AspA2I CCTAGG 1 cut(s) 323
AspS9I GGNCC 3 cut(s) 39, 278, 327
AsuHPI GGTGA 1 cut(s) 104
AvaII GGWCC 2 cut(s) 39, 278
AvrII CCTAGG 1 cut(s) 323
BaeI ACNNNNGTAYC 2 cut(s) 235, 268
BanII GRGCYC 1 cut(s) 70
BbvI GCAGC 1 cut(s) 182
BciT130I CCWGG 1 cut(s) 64
BfaI CTAG 3 cut(s) 221, 324, 331
BfmI CTRYAG 1 cut(s) 177
BisI GCNGC 1 cut(s) 171
BlnI CCTAGG 1 cut(s) 323
BlsI GCNGC 1 cut(s) 172
Bme1390I CCNGG 1 cut(s) 64
Bme18I GGWCC 2 cut(s) 39, 278
BmgT120I GGNCC 3 cut(s) 39, 278, 327
BmiI GGNNCC 2 cut(s) 158, 280
BmrFI CCNGG 1 cut(s) 64
BmrI ACTGGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 63, 323
Bsc4I CCNNNNNNNGG 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 63, 323
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 157
BseXI GCAGC 1 cut(s) 182
BsgI GTGCAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 64
BsnI GGCC 1 cut(s) 328
Bsp1286I GDGCHC 1 cut(s) 70
BspACI CCGC 1 cut(s) 201
BspANI GGCC 1 cut(s) 328
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 158, 280
BspMAI CTGCAG 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 86
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 63, 323
BssT1I CCWWGG 1 cut(s) 323
Bst2UI CCWGG 1 cut(s) 64
Bst4CI ACNGT 3 cut(s) 187, 269, 301
Bst6I CTCTTC 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 181, 309
BstDEI CTNAG 2 cut(s) 69, 261
BstF5I GGATG 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 176, 317
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 182
BsuRI GGCC 1 cut(s) 328
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 2 cut(s) 181, 309
CaiI CAGNNNCTG 3 cut(s) 176, 185, 289
Cfr13I GGNCC 3 cut(s) 39, 278, 327
Csp6I GTAC 1 cut(s) 244
CviJI RGCY 7 cut(s) 62, 68, 79, 173, 289, 311, 328
CviKI_1 RGCY 7 cut(s) 62, 68, 79, 173, 289, 311, 328
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 2 cut(s) 69, 261
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
Eco130I CCWWGG 1 cut(s) 323
Eco24I GRGCYC 1 cut(s) 70
Eco47I GGWCC 2 cut(s) 39, 278
EcoO109I RGGNCCY 1 cut(s) 327
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 323
EcoT38I GRGCYC 1 cut(s) 70
ErhI CCWWGG 1 cut(s) 323
FaiI YATR 1 cut(s) 296
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 1 cut(s) 221
FriOI GRGCYC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 3 cut(s) 221, 324, 331
GluI GCNGC 1 cut(s) 171
HaeIII GGCC 1 cut(s) 328
HphI GGTGA 1 cut(s) 104
Hpy166II GTNNAC 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 127
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 3 cut(s) 187, 269, 301
HpyCH4V TGCA 2 cut(s) 170, 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 317
HpyF3I CTNAG 2 cut(s) 69, 261
LguI GCTCTTC 1 cut(s) 86
LmnI GCTCC 2 cut(s) 178, 325
Lsp1109I GCAGC 1 cut(s) 182
LweI GCATC 1 cut(s) 294
MaeI CTAG 3 cut(s) 221, 324, 331
MaeIII GTNAC 1 cut(s) 92
MboII GAAGA 2 cut(s) 73, 246
MhlI GDGCHC 1 cut(s) 70
MmeI TCCRAC 2 cut(s) 17, 256
MnlI CCTC 1 cut(s) 110
MroXI GAANNNNTTC 2 cut(s) 123, 290
MseI TTAA 3 cut(s) 45, 108, 194
MslI CAYNNNNRTG 1 cut(s) 299
MspR9I CCNGG 1 cut(s) 64
MvaI CCWGG 1 cut(s) 64
MwoI GCNNNNNNNGC 2 cut(s) 176, 317
NlaIV GGNNCC 2 cut(s) 158, 280
NmuCI GTSAC 1 cut(s) 92
PciSI GCTCTTC 1 cut(s) 86
PdmI GAANNNNTTC 2 cut(s) 123, 290
PkrI GCNGC 1 cut(s) 172
PshBI ATTAAT 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 2 cut(s) 158, 280
PspPI GGNCC 3 cut(s) 39, 278, 327
PstI CTGCAG 1 cut(s) 181
PstNI CAGNNNCTG 3 cut(s) 176, 185, 289
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 86
SaqAI TTAA 3 cut(s) 45, 108, 194
SatI GCNGC 1 cut(s) 171
Sau96I GGNCC 3 cut(s) 39, 278, 327
SbfI CCTGCAGG 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 64
SdaI CCTGCAGG 1 cut(s) 181
SduI GDGCHC 1 cut(s) 70
SetI ASST 7 cut(s) 37, 81, 102, 175, 222, 291, 313
SfaNI GCATC 1 cut(s) 294
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 2 cut(s) 39, 278
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse8387I CCTGCAGG 1 cut(s) 181
SsiI CCGC 1 cut(s) 201
SspMI CTAG 3 cut(s) 221, 324, 331
StyD4I CCNGG 1 cut(s) 62
StyI CCWWGG 1 cut(s) 323
TaaI ACNGT 3 cut(s) 187, 269, 301
Tru1I TTAA 3 cut(s) 45, 108, 194
Tru9I TTAA 3 cut(s) 45, 108, 194
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 92
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 92
TspDTI ATGAA 1 cut(s) 283
TspRI CASTG 1 cut(s) 190
VpaK11BI GGWCC 2 cut(s) 39, 278
VspI ATTAAT 1 cut(s) 45
XmaJI CCTAGG 1 cut(s) 323
XmnI GAANNNNTTC 2 cut(s) 123, 290
XspI CTAG 3 cut(s) 221, 324, 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.