Rh7BG187200

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000318
Physical Location & Seq
Reverse (-)
15126311 .. 15127328
1018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG187200.1

Sequence Viewer

Length: 573 bp
ATGGCCTCTTCTCAGCTCTTCGTTATCCTTGCCATCCTAGCCATTTTCGCCCCTTCAATCCTGGCTACAGATTACATCGTTGGTGACGAGAAAGGTTGGACTACTAACTTCGATTACCAGGCTTGGGCTCAGGGAAAGATGTTCGTTGTTGGCGACAACCTTGGTATGCATATTAACAAGCACAAACTTACACCCATGCAACATCTTTTAATCTTTGTTTTGGGAACTAATTTCAGTTTTCTGATTCTTTTATCTTATGCAGTATTCAATTACCCCAAAGGAGTCCACAACGTAAACAAAGTGAACGGCACCGGGTTTCAACAGTGTGCAGCTCCTGTCGGCGCTGCTCCATTAACAAGTGGTAATGATGTGATCAACCTTGCAACCCCAGGAAGAAAATGGTACATTTGTGGTGTTGCTAAGCATTGTACTGATGGGGGACAGAAGCTCGTCATCACTGTCATGCCATCGACTGCTCCAAGCCCTAGCCCCGTTGCTGCTAGCCCAAGCTCCCTCTCTGCATCATCCGCTGCTCCTAGCCCTAGCCCCACCGCAGGATGCAGCGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

190

Amino Acids

19.95

Weight (kDa)

8.36

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 88 - 146 4.5e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 308
AciI CCGC 2 cut(s) 528, 552
AfaI GTAC 2 cut(s) 404, 430
AfiI CCNNNNNNNGG 2 cut(s) 124, 554
AgsI TTSAA 3 cut(s) 57, 268, 320
AjnI CCWGG 3 cut(s) 60, 117, 388
AluBI AGCT 4 cut(s) 16, 332, 448, 510
AluI AGCT 4 cut(s) 16, 332, 448, 510
AlwNI CAGNNNCTG 1 cut(s) 335
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 5 cut(s) 329, 344, 497, 530, 561
AspLEI GCGC 1 cut(s) 344
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 95
AsuNHI GCTAGC 1 cut(s) 500
BaeI ACNNNNGTAYC 2 cut(s) 394, 427
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 130
BbvI GCAGC 4 cut(s) 331, 341, 484, 517
BccI CCATC 3 cut(s) 41, 428, 475
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 3 cut(s) 62, 119, 390
BclI TGATCA 1 cut(s) 372
BcnI CCSGG 1 cut(s) 313
BfaI CTAG 5 cut(s) 38, 486, 501, 537, 543
BfmI CTRYAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 345
BisI GCNGC 5 cut(s) 330, 345, 498, 531, 562
BlpI GCTNAGC 1 cut(s) 420
BlsI GCNGC 5 cut(s) 331, 346, 499, 532, 563
Bme1390I CCNGG 4 cut(s) 62, 119, 313, 390
BmiI GGNNCC 1 cut(s) 310
BmrFI CCNGG 4 cut(s) 62, 119, 313, 390
BmsI GCATC 2 cut(s) 530, 548
BmtI GCTAGC 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 420
BpuMI CCSGG 1 cut(s) 313
BsaJI CCNNGG 2 cut(s) 160, 388
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 554
BseBI CCWGG 3 cut(s) 62, 119, 390
BseDI CCNNGG 2 cut(s) 160, 388
BseGI GGATG 3 cut(s) 33, 524, 563
BseLI CCNNNNNNNGG 2 cut(s) 124, 554
BseMII CTCAG 2 cut(s) 26, 143
BseXI GCAGC 4 cut(s) 331, 341, 484, 517
BsgI GTGCAG 1 cut(s) 348
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 312
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 2 cut(s) 124, 554
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 372
Bsp1720I GCTNAGC 1 cut(s) 420
BspACI CCGC 2 cut(s) 528, 552
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 25, 142
BspLI GGNNCC 1 cut(s) 310
BspOI GCTAGC 1 cut(s) 504
BspQI GCTCTTC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 160, 388
BssMI GATC 1 cut(s) 372
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 3 cut(s) 62, 119, 390
Bst4CI ACNGT 2 cut(s) 324, 460
Bst6I CTCTTC 2 cut(s) 13, 23
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 3 cut(s) 12, 129, 420
BstF5I GGATG 3 cut(s) 33, 524, 563
BstH2I RGCGCY 1 cut(s) 345
BstHHI GCGC 1 cut(s) 344
BstKTI GATC 1 cut(s) 375
BstMBI GATC 1 cut(s) 372
BstMWI GCNNNNNNNGC 3 cut(s) 38, 47, 527
BstNI CCWGG 3 cut(s) 62, 119, 390
BstSCI CCNGG 4 cut(s) 60, 117, 311, 388
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 4 cut(s) 331, 341, 484, 517
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 33, 524, 563
BtsIMutI CAGTG 2 cut(s) 329, 456
Cac8I GCNNGC 1 cut(s) 502
CaiI CAGNNNCTG 1 cut(s) 335
CfoI GCGC 1 cut(s) 344
Csp6I GTAC 2 cut(s) 403, 429
CviAII CATG 2 cut(s) 196, 463
CviQI GTAC 2 cut(s) 403, 429
DdeI CTNAG 3 cut(s) 12, 129, 420
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
Eam1104I CTCTTC 2 cut(s) 13, 23
EarI CTCTTC 2 cut(s) 13, 23
Eco130I CCWWGG 1 cut(s) 160
Eco24I GRGCYC 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 60, 117, 388
EcoT14I CCWWGG 1 cut(s) 160
EcoT22I ATGCAT 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 130
ErhI CCWWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 199, 466
FaiI YATR 6 cut(s) 167, 171, 197, 258, 464, 571
FaqI GGGAC 1 cut(s) 453
FatI CATG 2 cut(s) 195, 462
FbaI TGATCA 1 cut(s) 372
Fnu4HI GCNGC 5 cut(s) 330, 345, 498, 531, 562
FokI GGATG 2 cut(s) 20, 511
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 5 cut(s) 330, 345, 498, 531, 562
FspBI CTAG 5 cut(s) 38, 486, 501, 537, 543
GlaI GCGC 1 cut(s) 343
GluI GCNGC 5 cut(s) 330, 345, 498, 531, 562
HaeII RGCGCY 1 cut(s) 345
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 344
Hin1II CATG 2 cut(s) 199, 466
Hin6I GCGC 1 cut(s) 342
HinP1I GCGC 1 cut(s) 342
HinfI GANTC 2 cut(s) 244, 282
HpaII CCGG 1 cut(s) 312
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 3 cut(s) 286, 295, 304
Hpy188I TCNGA 1 cut(s) 243
Hpy8I GTNNAC 3 cut(s) 286, 295, 304
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 2 cut(s) 324, 460
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 7 cut(s) 169, 199, 260, 329, 383, 521, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 47, 527
HpyF3I CTNAG 3 cut(s) 12, 129, 420
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 2 cut(s) 199, 466
HspAI GCGC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 372
Kzo9I GATC 1 cut(s) 372
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 5 cut(s) 337, 352, 481, 515, 538
Lsp1109I GCAGC 4 cut(s) 331, 341, 484, 517
LweI GCATC 2 cut(s) 530, 548
MaeI CTAG 5 cut(s) 38, 486, 501, 537, 543
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MboII GAAGA 2 cut(s) 10, 405
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 2 cut(s) 229, 268
MlyI GAGTC 1 cut(s) 291
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 2 cut(s) 16, 524
Mph1103I ATGCAT 1 cut(s) 171
MseI TTAA 3 cut(s) 174, 209, 353
MslI CAYNNNNRTG 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 530
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 4 cut(s) 62, 119, 313, 390
MvaI CCWGG 3 cut(s) 62, 119, 390
MwoI GCNNNNNNNGC 3 cut(s) 38, 47, 527
NciI CCSGG 1 cut(s) 313
NdeII GATC 1 cut(s) 372
NheI GCTAGC 1 cut(s) 500
NlaIII CATG 2 cut(s) 199, 466
NlaIV GGNNCC 1 cut(s) 310
NmuCI GTSAC 1 cut(s) 83
NsiI ATGCAT 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 150
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 5 cut(s) 331, 346, 499, 532, 563
PleI GAGTC 1 cut(s) 290
PpsI GAGTC 1 cut(s) 290
Psp6I CCWGG 3 cut(s) 60, 117, 388
PspGI CCWGG 3 cut(s) 60, 117, 388
PspN4I GGNNCC 1 cut(s) 310
PstNI CAGNNNCTG 1 cut(s) 335
RsaI GTAC 2 cut(s) 404, 430
RsaNI GTAC 2 cut(s) 403, 429
RseI CAYNNNNRTG 1 cut(s) 461
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 174, 209, 353
SatI GCNGC 5 cut(s) 330, 345, 498, 531, 562
Sau3AI GATC 1 cut(s) 372
SchI GAGTC 1 cut(s) 291
ScrFI CCNGG 4 cut(s) 62, 119, 313, 390
SduI GDGCHC 1 cut(s) 130
SetI ASST 8 cut(s) 18, 97, 162, 294, 334, 381, 450, 512
SfaNI GCATC 2 cut(s) 530, 548
SfcI CTRYAG 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 461
Sse9I AATT 2 cut(s) 229, 268
SsiI CCGC 2 cut(s) 528, 552
SspMI CTAG 5 cut(s) 38, 486, 501, 537, 543
StyD4I CCNGG 4 cut(s) 60, 117, 311, 388
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 324, 460
TaiI ACGT 1 cut(s) 294
TaqI TCGA 2 cut(s) 111, 470
TasI AATT 2 cut(s) 229, 268
TatI WGTACW 1 cut(s) 428
TfiI GAWTC 1 cut(s) 244
Tru1I TTAA 3 cut(s) 174, 209, 353
Tru9I TTAA 3 cut(s) 174, 209, 353
TscAI CASTG 2 cut(s) 329, 463
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 5 cut(s) 329, 344, 497, 530, 561
Tsp45I GTSAC 1 cut(s) 83
TspRI CASTG 2 cut(s) 329, 463
XcmI CCANNNNNNNNNTGG 1 cut(s) 396
XspI CTAG 5 cut(s) 38, 486, 501, 537, 543
Zsp2I ATGCAT 1 cut(s) 171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.