FvH4_5g01030

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000318
Physical Location & Seq
Forward (+)
640380 .. 640960
581 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01030.t1

Sequence Viewer

Length: 456 bp
ATGGCTTCTTCTCAGCATTTCATCATCCTGGCCATTCTAGCAATCGTTGCCCCTTCAATTCTGGCAACAGATTATGTTGTTGGTGATGACAGAGGTTGGACAACTAACTTTGATTACCAAGCTTGGGCTCGGGGGAAGATGTTCGTTGTTGGCGACAACCTTGTTTTTCATTATGCAGCAGGAGTGCACAATGTGCTGAAAGTGAACGGCACTGGGTTCCAACAATGTGCAGCTCCTGCAGGCACTGTGCCGTTAACAAGTGGTCATGATGTGATAAACCTAGCAACCCCAGGAAGGAAGTGGTACATTTGTGGAGCTCCTAACCACTGTACTGTTGGGGGACAGAAGCTTGCCATCACTGTGATGCCATCGTCGTTTGCTCCTAGCCCGAGCCCTCTCTCTAGATCTGCAGATTCCGTCACTCCTAGCCCTAGCCCCACCTCTGCTGGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

152

Amino Acids

15.76

Weight (kDa)

7.73

Isoelectric Point (pI)

52.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 1.2e-24 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 30
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 305, 331
AfiI CCNNNNNNNGG 2 cut(s) 124, 294
AgsI TTSAA 1 cut(s) 57
AjnI CCWGG 2 cut(s) 27, 289
AluBI AGCT 4 cut(s) 122, 233, 317, 349
AluI AGCT 4 cut(s) 122, 233, 317, 349
Alw21I GWGCWC 2 cut(s) 189, 319
Alw44I GTGCAC 1 cut(s) 185
AlwNI CAGNNNCTG 2 cut(s) 236, 245
Ama87I CYCGRG 2 cut(s) 129, 388
AoxI GGCC 1 cut(s) 30
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 176, 230
Asp700I GAANNNNTTC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 95
AvaI CYCGRG 2 cut(s) 129, 388
BaeGI GKGCMC 1 cut(s) 189
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 3 cut(s) 130, 319, 395
Bbv12I GWGCWC 2 cut(s) 189, 319
BbvI GCAGC 2 cut(s) 188, 242
BccI CCATC 2 cut(s) 362, 376
BceAI ACGGC 2 cut(s) 223, 235
BciT130I CCWGG 2 cut(s) 29, 291
BfaI CTAG 6 cut(s) 38, 281, 384, 402, 426, 432
BfmI CTRYAG 2 cut(s) 237, 408
BglII AGATCT 1 cut(s) 404
BisI GCNGC 2 cut(s) 177, 231
BlsI GCNGC 2 cut(s) 178, 232
Bme1390I CCNGG 2 cut(s) 29, 291
BmeT110I CYCGRG 2 cut(s) 129, 388
BmiI GGNNCC 1 cut(s) 218
BmrFI CCNGG 2 cut(s) 29, 291
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 2 cut(s) 354, 440
BmuI ACTGGG 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 294
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 29, 291
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 24, 455
BseLI CCNNNNNNNGG 2 cut(s) 124, 294
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 2 cut(s) 188, 242
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 1 cut(s) 32
BsiHKAI GWGCWC 2 cut(s) 189, 319
BsiHKCI CYCGRG 2 cut(s) 129, 388
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 2 cut(s) 124, 294
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 1 cut(s) 32
BsoBI CYCGRG 2 cut(s) 129, 388
Bsp1286I GDGCHC 4 cut(s) 130, 189, 319, 395
Bsp143I GATC 1 cut(s) 404
BspANI GGCC 1 cut(s) 32
BspCNI CTCAG 1 cut(s) 25
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 218
BspMAI CTGCAG 2 cut(s) 241, 412
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 404
Bst2UI CCWGG 2 cut(s) 29, 291
Bst4CI ACNGT 4 cut(s) 247, 329, 334, 361
BstAPI GCANNNNNTGC 3 cut(s) 47, 193, 236
BstC8I GCNNGC 2 cut(s) 241, 351
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 24, 455
BstKTI GATC 1 cut(s) 407
BstMBI GATC 1 cut(s) 404
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 193, 236
BstNI CCWGG 2 cut(s) 29, 291
BstSCI CCNGG 2 cut(s) 27, 289
BstSFI CTRYAG 2 cut(s) 237, 408
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 188, 242
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 1 cut(s) 32
BtsCI GGATG 2 cut(s) 24, 455
BtsIMutI CAGTG 4 cut(s) 210, 243, 325, 357
Cac8I GCNNGC 2 cut(s) 241, 351
CaiI CAGNNNCTG 2 cut(s) 236, 245
CciI TCATGA 1 cut(s) 265
Csp6I GTAC 2 cut(s) 304, 330
CviAII CATG 1 cut(s) 266
CviQI GTAC 2 cut(s) 304, 330
DdeI CTNAG 1 cut(s) 12
DpnI GATC 1 cut(s) 406
DpnII GATC 1 cut(s) 404
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 30
Ecl136II GAGCTC 1 cut(s) 317
Eco24I GRGCYC 3 cut(s) 130, 319, 395
Eco53kI GAGCTC 1 cut(s) 317
Eco88I CYCGRG 2 cut(s) 129, 388
EcoICRI GAGCTC 1 cut(s) 317
EcoRII CCWGG 2 cut(s) 27, 289
EcoT38I GRGCYC 3 cut(s) 130, 319, 395
FaeI CATG 1 cut(s) 269
FaiI YATR 3 cut(s) 75, 174, 267
FaqI GGGAC 1 cut(s) 354
FatI CATG 1 cut(s) 265
Fnu4HI GCNGC 2 cut(s) 177, 231
FokI GGATG 1 cut(s) 11
FriOI GRGCYC 3 cut(s) 130, 319, 395
Fsp4HI GCNGC 2 cut(s) 177, 231
FspBI CTAG 6 cut(s) 38, 281, 384, 402, 426, 432
GluI GCNGC 2 cut(s) 177, 231
HaeIII GGCC 1 cut(s) 32
Hin1II CATG 1 cut(s) 269
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 2 cut(s) 120, 347
HinfI GANTC 1 cut(s) 413
HpaI GTTAAC 1 cut(s) 255
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 3 cut(s) 187, 205, 255
Hpy188III TCNNGA 2 cut(s) 266, 402
Hpy8I GTNNAC 3 cut(s) 187, 205, 255
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 2 cut(s) 63, 288
HpyCH4III ACNGT 4 cut(s) 247, 329, 334, 361
HpyCH4V TGCA 5 cut(s) 176, 187, 230, 239, 410
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 193, 236
HpyF3I CTNAG 1 cut(s) 12
Hsp92II CATG 1 cut(s) 269
KspAI GTTAAC 1 cut(s) 255
Kzo9I GATC 1 cut(s) 404
LmnI GCTCC 4 cut(s) 238, 314, 322, 385
Lsp1109I GCAGC 2 cut(s) 188, 242
LweI GCATC 2 cut(s) 354, 440
MaeI CTAG 6 cut(s) 38, 281, 384, 402, 426, 432
MaeIII GTNAC 1 cut(s) 418
MalI GATC 1 cut(s) 406
MboI GATC 1 cut(s) 404
MboII GAAGA 1 cut(s) 148
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 4 cut(s) 130, 189, 319, 395
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 57
MluNI TGGCCA 1 cut(s) 32
MmeI TCCRAC 2 cut(s) 77, 244
MnlI CCTC 3 cut(s) 86, 405, 451
Mox20I TGGCCA 1 cut(s) 32
MroXI GAANNNNTTC 1 cut(s) 140
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 2 cut(s) 359, 362
Msp20I TGGCCA 1 cut(s) 32
MspR9I CCNGG 2 cut(s) 29, 291
MvaI CCWGG 2 cut(s) 29, 291
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 193, 236
NdeII GATC 1 cut(s) 404
NlaIII CATG 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 218
NmuCI GTSAC 1 cut(s) 418
PagI TCATGA 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 413
PkrI GCNGC 2 cut(s) 178, 232
Psp124BI GAGCTC 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 27, 289
PspGI CCWGG 2 cut(s) 27, 289
PspN4I GGNNCC 1 cut(s) 218
PstI CTGCAG 2 cut(s) 241, 412
PstNI CAGNNNCTG 2 cut(s) 236, 245
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 2 cut(s) 305, 331
RsaNI GTAC 2 cut(s) 304, 330
RseI CAYNNNNRTG 2 cut(s) 359, 362
SacI GAGCTC 1 cut(s) 319
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 177, 231
Sau3AI GATC 1 cut(s) 404
SbfI CCTGCAGG 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 29, 291
SdaI CCTGCAGG 1 cut(s) 241
SduI GDGCHC 4 cut(s) 130, 189, 319, 395
SetI ASST 8 cut(s) 97, 124, 162, 235, 282, 319, 351, 443
SfaNI GCATC 2 cut(s) 354, 440
SfcI CTRYAG 2 cut(s) 237, 408
SmiMI CAYNNNNRTG 2 cut(s) 359, 362
Sse8387I CCTGCAGG 1 cut(s) 241
Sse9I AATT 1 cut(s) 57
SspMI CTAG 6 cut(s) 38, 281, 384, 402, 426, 432
SstI GAGCTC 1 cut(s) 319
StyD4I CCNGG 2 cut(s) 27, 289
TaaI ACNGT 4 cut(s) 247, 329, 334, 361
TasI AATT 1 cut(s) 57
TatI WGTACW 1 cut(s) 329
TfiI GAWTC 1 cut(s) 413
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 4 cut(s) 217, 250, 332, 364
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 2 cut(s) 176, 230
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 2 cut(s) 10, 158
TspGWI ACGGA 1 cut(s) 406
TspRI CASTG 4 cut(s) 217, 250, 332, 364
VneI GTGCAC 1 cut(s) 185
XbaI TCTAGA 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 2 cut(s) 297, 332
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 6 cut(s) 38, 281, 384, 402, 426, 432
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.