Rmu_sc0005350.1_g000004

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005350.1
OG0000318
Physical Location & Seq
Reverse (-)
20777 .. 21343
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005350.1_g000004.1.cds

Sequence Viewer

Length: 468 bp
atggcctcttctcagctcttcgttatccttgccatcctagccattttcgccccttcaatcctggctacagattacgtcgttggtgacgagaaaggttggactactaacttcgattaccaggcttgggctcagggaaagatgttcgttgttggcgacaaccttgtattcaattaccccaaaggagtccacaacgtgtacaaagtgaacggcaccgggtttcaacagtgtgcagctcctgtcggcgctgcgccattaacaagtggtaatgatgtgatcaaccttgcaaccccaggaagaaaatggtacatttgtggtgttgctaagcattgtgctgatgggggacagaagctcgtcatcactgtcatgccgtcgactgctccaagccctagccccgttgctcctcgcccaagctccctctctgcatcatccactgctcctagccctagccccaccgcaggatgcagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

155

Amino Acids

16.08

Weight (kDa)

8.38

Isoelectric Point (pI)

48.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AccI GTMKAC 1 cut(s) 371
AciI CCGC 1 cut(s) 453
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 197, 305
AfiI CCNNNNNNNGG 2 cut(s) 124, 455
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 3 cut(s) 57, 169, 221
AjnI CCWGG 3 cut(s) 60, 117, 289
AluBI AGCT 5 cut(s) 16, 233, 349, 411, 465
AluI AGCT 5 cut(s) 16, 233, 349, 411, 465
AlwNI CAGNNNCTG 1 cut(s) 236
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 230, 245, 462
AspLEI GCGC 2 cut(s) 245, 250
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 95
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 232, 242
BccI CCATC 2 cut(s) 41, 329
BceAI ACGGC 2 cut(s) 223, 352
BciT130I CCWGG 3 cut(s) 62, 119, 291
BclI TGATCA 1 cut(s) 273
BcnI CCSGG 1 cut(s) 214
BfaI CTAG 5 cut(s) 38, 387, 438, 444, 466
BfmI CTRYAG 1 cut(s) 66
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 3 cut(s) 231, 246, 463
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 3 cut(s) 232, 247, 464
Bme1390I CCNGG 4 cut(s) 62, 119, 214, 291
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 4 cut(s) 62, 119, 214, 291
BmsI GCATC 2 cut(s) 431, 449
Bpu10I CCTNAGC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 321
BpuMI CCSGG 1 cut(s) 214
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 455
BseBI CCWGG 3 cut(s) 62, 119, 291
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 3 cut(s) 33, 425, 464
BseLI CCNNNNNNNGG 2 cut(s) 124, 455
BseMII CTCAG 2 cut(s) 26, 143
BseRI GAGGAG 1 cut(s) 390
BseXI GCAGC 2 cut(s) 232, 242
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 209
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 2 cut(s) 124, 455
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 1 cut(s) 273
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 1 cut(s) 453
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 25, 142
BspLI GGNNCC 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 209
BsrGI TGTACA 1 cut(s) 195
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 273
Bst2UI CCWGG 3 cut(s) 62, 119, 291
Bst4CI ACNGT 2 cut(s) 225, 361
Bst6I CTCTTC 2 cut(s) 13, 23
BstAUI TGTACA 1 cut(s) 195
BstDEI CTNAG 3 cut(s) 12, 129, 321
BstF5I GGATG 3 cut(s) 33, 425, 464
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 2 cut(s) 245, 250
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstMWI GCNNNNNNNGC 2 cut(s) 38, 47
BstNI CCWGG 3 cut(s) 62, 119, 291
BstSCI CCNGG 4 cut(s) 60, 117, 212, 289
BstSFI CTRYAG 1 cut(s) 66
BstV1I GCAGC 2 cut(s) 232, 242
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 3 cut(s) 33, 425, 464
BtsI GCAGTG 1 cut(s) 429
BtsIMutI CAGTG 3 cut(s) 230, 357, 429
CaiI CAGNNNCTG 1 cut(s) 236
CfoI GCGC 2 cut(s) 245, 250
Csp6I GTAC 2 cut(s) 196, 304
CviAII CATG 1 cut(s) 364
CviQI GTAC 2 cut(s) 196, 304
DdeI CTNAG 3 cut(s) 12, 129, 321
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 13, 23
EarI CTCTTC 2 cut(s) 13, 23
Eco24I GRGCYC 1 cut(s) 130
EcoRII CCWGG 3 cut(s) 60, 117, 289
EcoT38I GRGCYC 1 cut(s) 130
FaeI CATG 1 cut(s) 367
FaiI YATR 1 cut(s) 365
FaqI GGGAC 1 cut(s) 354
FatI CATG 1 cut(s) 363
FbaI TGATCA 1 cut(s) 273
FblI GTMKAC 1 cut(s) 371
Fnu4HI GCNGC 3 cut(s) 231, 246, 463
FokI GGATG 2 cut(s) 20, 412
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 3 cut(s) 231, 246, 463
FspBI CTAG 5 cut(s) 38, 387, 438, 444, 466
GlaI GCGC 2 cut(s) 244, 249
GluI GCNGC 3 cut(s) 231, 246, 463
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 213
HhaI GCGC 2 cut(s) 245, 250
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 2 cut(s) 243, 248
HinP1I GCGC 2 cut(s) 243, 248
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HinfI GANTC 1 cut(s) 183
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 4 cut(s) 187, 196, 205, 372
Hpy8I GTNNAC 4 cut(s) 187, 196, 205, 372
Hpy99I CGWCG 2 cut(s) 80, 373
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 2 cut(s) 225, 361
HpyCH4IV ACGT 2 cut(s) 75, 192
HpyCH4V TGCA 4 cut(s) 230, 284, 422, 462
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 47
HpyF3I CTNAG 3 cut(s) 12, 129, 321
HpySE526I ACGT 2 cut(s) 75, 192
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 2 cut(s) 243, 248
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 1 cut(s) 273
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 5 cut(s) 238, 382, 403, 416, 439
Lsp1109I GCAGC 2 cut(s) 232, 242
LweI GCATC 2 cut(s) 431, 449
MaeI CTAG 5 cut(s) 38, 387, 438, 444, 466
MaeII ACGT 2 cut(s) 75, 192
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 2 cut(s) 10, 306
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 1 cut(s) 169
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 3 cut(s) 16, 411, 425
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 362
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 4 cut(s) 62, 119, 214, 291
MteI GCGCNGCGC 1 cut(s) 246
MvaI CCWGG 3 cut(s) 62, 119, 291
MwoI GCNNNNNNNGC 2 cut(s) 38, 47
NciI CCSGG 1 cut(s) 214
NdeII GATC 1 cut(s) 273
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 23
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 150
PkrI GCNGC 3 cut(s) 232, 247, 464
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
Psp6I CCWGG 3 cut(s) 60, 117, 289
PspGI CCWGG 3 cut(s) 60, 117, 289
PspN4I GGNNCC 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 197, 305
RsaNI GTAC 2 cut(s) 196, 304
RseI CAYNNNNRTG 1 cut(s) 362
SalI GTCGAC 1 cut(s) 370
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 3 cut(s) 231, 246, 463
Sau3AI GATC 1 cut(s) 273
SchI GAGTC 1 cut(s) 192
ScrFI CCNGG 4 cut(s) 62, 119, 214, 291
SduI GDGCHC 1 cut(s) 130
SfaNI GCATC 2 cut(s) 431, 449
SfcI CTRYAG 1 cut(s) 66
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 1 cut(s) 169
SsiI CCGC 1 cut(s) 453
SspMI CTAG 5 cut(s) 38, 387, 438, 444, 466
StyD4I CCNGG 4 cut(s) 60, 117, 212, 289
TaaI ACNGT 2 cut(s) 225, 361
TaiI ACGT 2 cut(s) 78, 195
TaqI TCGA 2 cut(s) 111, 371
TasI AATT 1 cut(s) 169
TatI WGTACW 1 cut(s) 195
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 3 cut(s) 230, 364, 436
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 3 cut(s) 230, 245, 462
Tsp45I GTSAC 1 cut(s) 83
TspRI CASTG 3 cut(s) 230, 364, 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XmiI GTMKAC 1 cut(s) 371
XspI CTAG 5 cut(s) 38, 387, 438, 444, 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.