Rh2CG494500

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000318
Physical Location & Seq
Reverse (-)
66346945 .. 66347452
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG494500.1

Sequence Viewer

Length: 387 bp
ATGACAAAGGTGGGACCATTAATGTTGATTACCAAGCCTGGGCTCAGGGAAAGCTCTTCGTTGTCGGTGACAACCTCGGAATTTTTTAACTTCCCAGAAGGAGTTCACAATGTTCTCAAAGTGAATGGAACTGGGTTCCAAGAATGTGCAGCTCCTGTGGCATTAACAAGTGGAAAGGATGTGATAAACCTAGCAACCACAGGAAGAAAATGGTACATTTGTGGTGTTTCTAAGCACTGTCAAGTTGGACCCCAGAAGCTGTTCATAACTGTGATGCCAGCTTCCTTTGCTCCTAGCCCAAGCCCCACTACCTCTACCAGTTCTGTTAACGGAGCAAGATTAGGGTGGATGATCGTTGTTTTTGGCATTCTTGGGATATTCATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

128

Amino Acids

13.58

Weight (kDa)

9.45

Isoelectric Point (pI)

38.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 28 - 83 1.1e-10 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 80
AfaI GTAC 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 39
AjnI CCWGG 1 cut(s) 37
AluBI AGCT 4 cut(s) 54, 152, 259, 281
AluI AGCT 4 cut(s) 54, 152, 259, 281
AlwNI CAGNNNCTG 2 cut(s) 155, 259
ApeKI GCWGC 1 cut(s) 149
ApoI RAATTY 1 cut(s) 80
AseI ATTAAT 1 cut(s) 20
Asp700I GAANNNNTTC 2 cut(s) 102, 260
AspS9I GGNCC 2 cut(s) 14, 248
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 2 cut(s) 14, 248
BaeI ACNNNNGTAYC 2 cut(s) 205, 238
BanII GRGCYC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 39
BfaI CTAG 3 cut(s) 191, 294, 385
BisI GCNGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 151
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 2 cut(s) 14, 248
BmgT120I GGNCC 2 cut(s) 14, 248
BmiI GGNNCC 3 cut(s) 15, 137, 250
BmrFI CCNGG 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 141
BmsI GCATC 1 cut(s) 264
BmuI ACTGGG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 44
BsaBI GATNNNNATC 1 cut(s) 380
BsaJI CCNNGG 2 cut(s) 38, 75
Bsc4I CCNNNNNNNGG 1 cut(s) 39
Bse1I ACTGG 2 cut(s) 136, 318
Bse8I GATNNNNATC 1 cut(s) 380
BseBI CCWGG 1 cut(s) 39
BseDI CCNNGG 2 cut(s) 38, 75
BseGI GGATG 2 cut(s) 184, 354
BseJI GATNNNNATC 1 cut(s) 380
BseLI CCNNNNNNNGG 1 cut(s) 39
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 2 cut(s) 136, 318
BseXI GCAGC 1 cut(s) 161
BsgI GTGCAG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 27
BslI CCNNNNNNNGG 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 366
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 1 cut(s) 351
BspCNI CTCAG 1 cut(s) 57
BspLI GGNNCC 3 cut(s) 15, 137, 250
BspQI GCTCTTC 1 cut(s) 61
BsrI ACTGG 2 cut(s) 136, 318
BssECI CCNNGG 2 cut(s) 38, 75
BssMI GATC 1 cut(s) 351
Bst2UI CCWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 239, 271
Bst6I CTCTTC 1 cut(s) 61
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 44, 231
BstF5I GGATG 2 cut(s) 184, 354
BstKTI GATC 1 cut(s) 354
BstMBI GATC 1 cut(s) 351
BstMWI GCNNNNNNNGC 2 cut(s) 158, 287
BstNI CCWGG 1 cut(s) 39
BstSCI CCNGG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 161
BtsCI GGATG 2 cut(s) 184, 354
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 1 cut(s) 279
CaiI CAGNNNCTG 2 cut(s) 155, 259
Cfr13I GGNCC 2 cut(s) 14, 248
Csp6I GTAC 1 cut(s) 214
CviJI RGCY 8 cut(s) 37, 43, 54, 152, 259, 281, 297, 303
CviKI_1 RGCY 8 cut(s) 37, 43, 54, 152, 259, 281, 297, 303
CviQI GTAC 1 cut(s) 214
DdeI CTNAG 2 cut(s) 44, 231
DpnI GATC 1 cut(s) 353
DpnII GATC 1 cut(s) 351
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 45
Eco47I GGWCC 2 cut(s) 14, 248
EcoRII CCWGG 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 45
FaiI YATR 1 cut(s) 266
FaqI GGGAC 1 cut(s) 27
Fnu4HI GCNGC 1 cut(s) 150
FokI GGATG 2 cut(s) 191, 361
FriOI GRGCYC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 150
FspBI CTAG 3 cut(s) 191, 294, 385
GluI GCNGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HpaI GTTAAC 1 cut(s) 328
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 2 cut(s) 106, 328
Hpy188I TCNGA 1 cut(s) 79
Hpy8I GTNNAC 2 cut(s) 106, 328
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 2 cut(s) 239, 271
HpyCH4V TGCA 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 287
HpyF3I CTNAG 2 cut(s) 44, 231
KspAI GTTAAC 1 cut(s) 328
Kzo9I GATC 1 cut(s) 351
LguI GCTCTTC 1 cut(s) 61
LmnI GCTCC 3 cut(s) 157, 295, 332
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 1 cut(s) 264
MaeI CTAG 3 cut(s) 191, 294, 385
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 353
MboI GATC 1 cut(s) 351
MboII GAAGA 2 cut(s) 48, 216
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 226
MnlI CCTC 2 cut(s) 85, 322
MroXI GAANNNNTTC 2 cut(s) 102, 260
MseI TTAA 4 cut(s) 20, 87, 164, 327
MslI CAYNNNNRTG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 39
Mva1269I GAATGC 1 cut(s) 366
MvaI CCWGG 1 cut(s) 39
MwoI GCNNNNNNNGC 2 cut(s) 158, 287
NdeII GATC 1 cut(s) 351
NlaIV GGNNCC 3 cut(s) 15, 137, 250
NmuCI GTSAC 1 cut(s) 67
PciSI GCTCTTC 1 cut(s) 61
PctI GAATGC 1 cut(s) 366
PdmI GAANNNNTTC 2 cut(s) 102, 260
PkrI GCNGC 1 cut(s) 151
PshBI ATTAAT 1 cut(s) 20
Psp6I CCWGG 1 cut(s) 37
PspGI CCWGG 1 cut(s) 37
PspN4I GGNNCC 3 cut(s) 15, 137, 250
PspPI GGNCC 2 cut(s) 14, 248
PstNI CAGNNNCTG 2 cut(s) 155, 259
RsaI GTAC 1 cut(s) 215
RsaNI GTAC 1 cut(s) 214
RseI CAYNNNNRTG 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 61
SaqAI TTAA 4 cut(s) 20, 87, 164, 327
SatI GCNGC 1 cut(s) 150
Sau3AI GATC 1 cut(s) 351
Sau96I GGNCC 2 cut(s) 14, 248
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 45
SetI ASST 8 cut(s) 12, 56, 77, 154, 192, 261, 283, 314
SfaNI GCATC 1 cut(s) 264
SinI GGWCC 2 cut(s) 14, 248
SmiMI CAYNNNNRTG 1 cut(s) 269
Sse9I AATT 1 cut(s) 80
SspMI CTAG 3 cut(s) 191, 294, 385
StyD4I CCNGG 1 cut(s) 37
TaaI ACNGT 2 cut(s) 239, 271
TasI AATT 1 cut(s) 80
Tru1I TTAA 4 cut(s) 20, 87, 164, 327
Tru9I TTAA 4 cut(s) 20, 87, 164, 327
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 67
TspDTI ATGAA 2 cut(s) 253, 370
TspGWI ACGGA 1 cut(s) 345
TspRI CASTG 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 14, 248
VspI ATTAAT 1 cut(s) 20
XapI RAATTY 1 cut(s) 80
XmnI GAANNNNTTC 2 cut(s) 102, 260
XspI CTAG 3 cut(s) 191, 294, 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.