RchiOBHm_Chr7g0200311

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000318
Physical Location & Seq
Reverse (-)
18119821 .. 18122837
3017 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17928

Sequence Viewer

Length: 813 bp
ATGGCCTCTTCCCAGCTTTTCATTATCCTGGCCATTCTAGCAATCGTTGCCCCTTCAGTTTTGGCAACAGATTATGTTGTTGGTGATGACAAAGGTTGGACAACTAACTTTGATTACCAAGCTTGGGCTCGGGGAAAGATGTTCGTTGTTGGCGACAACCTTGTTTTTCACTATCCAGAAGGAGTGCACAATGTACTCAAAGTGAACGGCACTGGGTTTCAACAATGTGCAGGTCCTGCCAGCACTGCGCCATTAACAAGTGGTCATGATGTGATAACCCTAGCAAACCCAGGGAGGAAGTGGTACATTTGTGGTGCTCCTAACCATTGTGCTGCTGGGGGACAGAAGCTTGCCATCACTCTCTTCGTTATCCTTGCCATCCTAGCCATTTTCGCCCCTTCAATCCTGGCTACAGATTACGTCGTTGGTGACGAGAAAGGTTGGACTACTAACTTCGATTACCAGGCTTGGGCTCAGGGAAAGATGTTCGTTGTTGGCGACAACCTTGTATTCAATTACCCCAAAGGAGTCCACAACGTGTACAAAGTGAACGGCACCGGGTTTCAACAGTGTGCAGCTCCTGTCGGCGCTGCGCCATTAACAAGTGGTAATGATGTGATCAACCTTGCAACCCCAGGAAGAAAATGGTACATTTGTGGTGTTGCTAAGCATTGTGCTGATGGGGGACAGAAGCTCGTCATCACTGTCATGCCGTCGACTGCTCCAAGCCCTAGCCCCGTTGCTCCTGGCCCAAGCTCCCTCTCTGCATCATCCACTGCTCCTAGCCCTAGCCCCACCGCAGGATGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

270

Amino Acids

28.17

Weight (kDa)

7.6

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 2.5e-24 Plastocyanin-like domain
Cu_bind_like PF02298 148 - 228 2.7e-24 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 221
AccB1I GGYRCC 1 cut(s) 554
AccI GTMKAC 1 cut(s) 716
AciI CCGC 1 cut(s) 798
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 39
AdeI CACNNNGTG 1 cut(s) 538
AfaI GTAC 4 cut(s) 195, 305, 542, 650
AfiI CCNNNNNNNGG 3 cut(s) 124, 469, 800
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 4 cut(s) 221, 402, 514, 566
AjnI CCWGG 6 cut(s) 27, 289, 405, 462, 634, 745
AluBI AGCT 7 cut(s) 16, 122, 349, 578, 694, 756, 810
AluI AGCT 7 cut(s) 16, 122, 349, 578, 694, 756, 810
Alw21I GWGCWC 2 cut(s) 189, 319
Alw44I GTGCAC 1 cut(s) 185
AlwNI CAGNNNCTG 2 cut(s) 236, 581
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 3 cut(s) 3, 30, 748
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 4 cut(s) 332, 575, 590, 807
AspLEI GCGC 3 cut(s) 250, 590, 595
AspS9I GGNCC 2 cut(s) 233, 749
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 2 cut(s) 95, 440
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 189
BaeI ACNNNNGTAYC 4 cut(s) 295, 328, 640, 673
BalI TGGCCA 1 cut(s) 32
BanI GGYRCC 1 cut(s) 554
BanII GRGCYC 2 cut(s) 130, 475
Bbv12I GWGCWC 2 cut(s) 189, 319
BbvI GCAGC 3 cut(s) 319, 577, 587
BccI CCATC 3 cut(s) 362, 386, 674
BceAI ACGGC 3 cut(s) 223, 568, 697
BciT130I CCWGG 6 cut(s) 29, 291, 407, 464, 636, 747
BclI TGATCA 1 cut(s) 618
BcnI CCSGG 1 cut(s) 559
BfaI CTAG 7 cut(s) 38, 281, 383, 732, 783, 789, 811
BfmI CTRYAG 1 cut(s) 411
BfoI RGCGCY 1 cut(s) 591
BfuAI ACCTGC 1 cut(s) 221
BisI GCNGC 4 cut(s) 333, 576, 591, 808
BlpI GCTNAGC 1 cut(s) 666
BlsI GCNGC 4 cut(s) 334, 577, 592, 809
Bme1390I CCNGG 7 cut(s) 29, 291, 407, 464, 559, 636, 747
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 2 cut(s) 233, 749
BmiI GGNNCC 1 cut(s) 556
BmrFI CCNGG 7 cut(s) 29, 291, 407, 464, 559, 636, 747
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 2 cut(s) 776, 794
BmuI ACTGGG 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 474
Bpu1102I GCTNAGC 1 cut(s) 666
BpuMI CCSGG 1 cut(s) 559
BsaJI CCNNGG 3 cut(s) 289, 290, 634
Bsc4I CCNNNNNNNGG 3 cut(s) 124, 469, 800
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 6 cut(s) 29, 291, 407, 464, 636, 747
BseDI CCNNGG 3 cut(s) 289, 290, 634
BseGI GGATG 3 cut(s) 378, 770, 809
BseLI CCNNNNNNNGG 3 cut(s) 124, 469, 800
BseMII CTCAG 1 cut(s) 488
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 3 cut(s) 319, 577, 587
BseYI CCCAGC 2 cut(s) 12, 335
BsgI GTGCAG 2 cut(s) 249, 594
BshFI GGCC 3 cut(s) 5, 32, 750
BshNI GGYRCC 1 cut(s) 554
BsiHKAI GWGCWC 2 cut(s) 189, 319
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 558
BslFI GGGAC 2 cut(s) 354, 699
BslI CCNNNNNNNGG 3 cut(s) 124, 469, 800
BsmFI GGGAC 2 cut(s) 354, 699
BsnI GGCC 3 cut(s) 5, 32, 750
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 4 cut(s) 130, 189, 319, 475
Bsp1407I TGTACA 1 cut(s) 540
Bsp143I GATC 1 cut(s) 618
Bsp1720I GCTNAGC 1 cut(s) 666
BspACI CCGC 1 cut(s) 798
BspANI GGCC 3 cut(s) 5, 32, 750
BspCNI CTCAG 1 cut(s) 487
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 556
BspMI ACCTGC 1 cut(s) 221
BspT107I GGYRCC 1 cut(s) 554
BsrGI TGTACA 1 cut(s) 540
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 3 cut(s) 289, 290, 634
BssMI GATC 1 cut(s) 618
Bst2UI CCWGG 6 cut(s) 29, 291, 407, 464, 636, 747
Bst4CI ACNGT 2 cut(s) 570, 706
Bst6I CTCTTC 2 cut(s) 13, 368
BstAPI GCANNNNNTGC 2 cut(s) 47, 236
BstAUI TGTACA 1 cut(s) 540
BstC8I GCNNGC 2 cut(s) 241, 351
BstDEI CTNAG 2 cut(s) 474, 666
BstF5I GGATG 3 cut(s) 378, 770, 809
BstH2I RGCGCY 1 cut(s) 591
BstHHI GCGC 3 cut(s) 250, 590, 595
BstKTI GATC 1 cut(s) 621
BstMBI GATC 1 cut(s) 618
BstMWI GCNNNNNNNGC 6 cut(s) 38, 47, 236, 245, 383, 392
BstNI CCWGG 6 cut(s) 29, 291, 407, 464, 636, 747
BstSCI CCNGG 7 cut(s) 27, 289, 405, 462, 557, 634, 745
BstSFI CTRYAG 1 cut(s) 411
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 3 cut(s) 319, 577, 587
BsuRI GGCC 3 cut(s) 5, 32, 750
BtsCI GGATG 3 cut(s) 378, 770, 809
BtsI GCAGTG 2 cut(s) 243, 774
BtsIMutI CAGTG 5 cut(s) 210, 243, 575, 702, 774
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 241, 351
CaiI CAGNNNCTG 2 cut(s) 236, 581
CciI TCATGA 1 cut(s) 265
CfoI GCGC 3 cut(s) 250, 590, 595
Cfr13I GGNCC 2 cut(s) 233, 749
Csp6I GTAC 4 cut(s) 194, 304, 541, 649
CviAII CATG 2 cut(s) 266, 709
CviQI GTAC 4 cut(s) 194, 304, 541, 649
DdeI CTNAG 2 cut(s) 474, 666
DpnI GATC 1 cut(s) 620
DpnII GATC 1 cut(s) 618
DraIII CACNNNGTG 1 cut(s) 538
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 13, 368
EarI CTCTTC 2 cut(s) 13, 368
Eco24I GRGCYC 2 cut(s) 130, 475
Eco47I GGWCC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 233
EcoRII CCWGG 6 cut(s) 27, 289, 405, 462, 634, 745
EcoT38I GRGCYC 2 cut(s) 130, 475
FaeI CATG 2 cut(s) 269, 712
FaiI YATR 3 cut(s) 75, 267, 710
FaqI GGGAC 2 cut(s) 354, 699
FatI CATG 2 cut(s) 265, 708
FbaI TGATCA 1 cut(s) 618
FblI GTMKAC 1 cut(s) 716
Fnu4HI GCNGC 4 cut(s) 333, 576, 591, 808
FokI GGATG 2 cut(s) 365, 757
FriOI GRGCYC 2 cut(s) 130, 475
Fsp4HI GCNGC 4 cut(s) 333, 576, 591, 808
FspBI CTAG 7 cut(s) 38, 281, 383, 732, 783, 789, 811
GlaI GCGC 3 cut(s) 249, 589, 594
GluI GCNGC 4 cut(s) 333, 576, 591, 808
GsaI CCCAGC 2 cut(s) 16, 339
HaeII RGCGCY 1 cut(s) 591
HaeIII GGCC 3 cut(s) 5, 32, 750
HapII CCGG 1 cut(s) 558
HhaI GCGC 3 cut(s) 250, 590, 595
Hin1II CATG 2 cut(s) 269, 712
Hin6I GCGC 3 cut(s) 248, 588, 593
HinP1I GCGC 3 cut(s) 248, 588, 593
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HindIII AAGCTT 2 cut(s) 120, 347
HinfI GANTC 1 cut(s) 528
HpaII CCGG 1 cut(s) 558
HphI GGTGA 2 cut(s) 95, 440
Hpy166II GTNNAC 6 cut(s) 187, 205, 532, 541, 550, 717
Hpy188III TCNNGA 2 cut(s) 176, 266
Hpy8I GTNNAC 6 cut(s) 187, 205, 532, 541, 550, 717
Hpy99I CGWCG 2 cut(s) 425, 718
HpyAV CCTTC 3 cut(s) 63, 173, 408
HpyCH4III ACNGT 2 cut(s) 570, 706
HpyCH4IV ACGT 2 cut(s) 420, 537
HpyCH4V TGCA 6 cut(s) 187, 230, 575, 629, 767, 807
HpyF10VI GCNNNNNNNGC 6 cut(s) 38, 47, 236, 245, 383, 392
HpyF3I CTNAG 2 cut(s) 474, 666
HpySE526I ACGT 2 cut(s) 420, 537
Hsp92II CATG 2 cut(s) 269, 712
HspAI GCGC 3 cut(s) 248, 588, 593
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 1 cut(s) 618
LmnI GCTCC 6 cut(s) 322, 583, 727, 748, 761, 784
Lsp1109I GCAGC 3 cut(s) 319, 577, 587
LweI GCATC 2 cut(s) 776, 794
MaeI CTAG 7 cut(s) 38, 281, 383, 732, 783, 789, 811
MaeII ACGT 2 cut(s) 420, 537
MaeIII GTNAC 1 cut(s) 428
MalI GATC 1 cut(s) 620
MboI GATC 1 cut(s) 618
MboII GAAGA 2 cut(s) 355, 651
MhlI GDGCHC 4 cut(s) 130, 189, 319, 475
MlsI TGGCCA 1 cut(s) 32
MluCI AATT 1 cut(s) 514
MluNI TGGCCA 1 cut(s) 32
MlyI GAGTC 1 cut(s) 537
MmeI TCCRAC 2 cut(s) 77, 422
MnlI CCTC 3 cut(s) 16, 288, 770
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 2 cut(s) 254, 599
MslI CAYNNNNRTG 1 cut(s) 707
Msp20I TGGCCA 1 cut(s) 32
MspI CCGG 1 cut(s) 558
MspR9I CCNGG 7 cut(s) 29, 291, 407, 464, 559, 636, 747
MteI GCGCNGCGC 1 cut(s) 591
MvaI CCWGG 6 cut(s) 29, 291, 407, 464, 636, 747
MwoI GCNNNNNNNGC 6 cut(s) 38, 47, 236, 245, 383, 392
NciI CCSGG 1 cut(s) 559
NdeII GATC 1 cut(s) 618
NlaIII CATG 2 cut(s) 269, 712
NlaIV GGNNCC 1 cut(s) 556
NmuCI GTSAC 1 cut(s) 428
PagI TCATGA 1 cut(s) 265
PasI CCCWGGG 1 cut(s) 290
PcsI WCGNNNNNNNCGW 3 cut(s) 150, 429, 495
PkrI GCNGC 4 cut(s) 334, 577, 592, 809
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PpuMI RGGWCCY 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 6 cut(s) 27, 289, 405, 462, 634, 745
PspFI CCCAGC 2 cut(s) 12, 335
PspGI CCWGG 6 cut(s) 27, 289, 405, 462, 634, 745
PspN4I GGNNCC 1 cut(s) 556
PspPI GGNCC 2 cut(s) 233, 749
PspPPI RGGWCCY 1 cut(s) 233
PstNI CAGNNNCTG 2 cut(s) 236, 581
RsaI GTAC 4 cut(s) 195, 305, 542, 650
RsaNI GTAC 4 cut(s) 194, 304, 541, 649
RseI CAYNNNNRTG 1 cut(s) 707
SalI GTCGAC 1 cut(s) 715
SaqAI TTAA 2 cut(s) 254, 599
SatI GCNGC 4 cut(s) 333, 576, 591, 808
Sau3AI GATC 1 cut(s) 618
Sau96I GGNCC 2 cut(s) 233, 749
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 7 cut(s) 29, 291, 407, 464, 559, 636, 747
SduI GDGCHC 4 cut(s) 130, 189, 319, 475
SfaNI GCATC 2 cut(s) 776, 794
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 707
Sse9I AATT 1 cut(s) 514
SsiI CCGC 1 cut(s) 798
SspMI CTAG 7 cut(s) 38, 281, 383, 732, 783, 789, 811
StyD4I CCNGG 7 cut(s) 27, 289, 405, 462, 557, 634, 745
TaaI ACNGT 2 cut(s) 570, 706
TaiI ACGT 2 cut(s) 423, 540
TaqI TCGA 2 cut(s) 456, 716
TasI AATT 1 cut(s) 514
TatI WGTACW 2 cut(s) 193, 540
Tru1I TTAA 2 cut(s) 254, 599
Tru9I TTAA 2 cut(s) 254, 599
TscAI CASTG 5 cut(s) 217, 250, 575, 709, 781
TseFI GTSAC 1 cut(s) 428
TseI GCWGC 4 cut(s) 332, 575, 590, 807
Tsp45I GTSAC 1 cut(s) 428
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 5 cut(s) 217, 250, 575, 709, 781
VneI GTGCAC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 3 cut(s) 297, 332, 642
XmiI GTMKAC 1 cut(s) 716
XspI CTAG 7 cut(s) 38, 281, 383, 732, 783, 789, 811
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.