Rroxscaffold_3G00256060

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000318
Physical Location & Seq
Forward (+)
50495802 .. 50496496
695 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00256060.1

Sequence Viewer

Length: 588 bp
ATGGCCTCTTCCCAGCTCTTTATTATCTTTTCCATTCTAGCAATTTTCGTCCCTTTGATTGTGGCCAAAGATTATGTGGTTGGTGACAAAGCAGGTTGGACAATTGAAGTTGATTATGAAGCTTGGGCAAAGGGAAAAAATTTTCTGTTGGTGACAGACTTCGTAAGATCCCACAGTGTGGTTGAAGTGGAGGAGAAAGACTTTAATAGATGTAAAGCTCCTACCGACGGTAAGGAATTAACGAGTGGAGAGGATGTGATCAAGCTTGATGCCCCAGGAAAGAGATATTTCATTTGCAATGTTGGTAGACATTGTCAAATGGGGAACCAGAAGGTTGCTATAAATGTGGAATCATCTTCATCTTCATCTTCCTCTACTCCTAGCCCAAGCCCAAGTGAATCCAGCCCAAGTACCTCGAGCCCAGTACTCTCAAGCCCAGATCCCTCAAGCCCAAGTCATTCAAGTCCACCTGCTTCCCCCAGCCCAGCAGCCCCAAGCCCTGGTACCTCTGGAGCAACGATCGGAGAAAGATACGGGTGGATGTTAATTATGGTCGGTATTATAGGGTTTCTCATTGGGAGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

195

Amino Acids

20.63

Weight (kDa)

5.21

Isoelectric Point (pI)

65.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 108 1.4e-17 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 478
Acc36I ACCTGC 2 cut(s) 83, 478
Acc65I GGTACC 1 cut(s) 503
AccB1I GGYRCC 1 cut(s) 503
AccB7I CCANNNNNTGG 2 cut(s) 178, 500
AccI GTMKAC 1 cut(s) 307
AclWI GGATC 2 cut(s) 162, 434
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 139
AdeI CACNNNGTG 1 cut(s) 178
AfaI GTAC 3 cut(s) 412, 426, 505
AfiI CCNNNNNNNGG 3 cut(s) 178, 227, 500
AgsI TTSAA 3 cut(s) 107, 185, 462
AjnI CCWGG 2 cut(s) 274, 499
AluBI AGCT 4 cut(s) 16, 122, 218, 265
AluI AGCT 4 cut(s) 16, 122, 218, 265
AlwI GGATC 2 cut(s) 162, 434
Ama87I CYCGRG 1 cut(s) 415
AoxI GGCC 2 cut(s) 3, 63
ApeKI GCWGC 1 cut(s) 488
ApoI RAATTY 1 cut(s) 139
Asp718I GGTACC 1 cut(s) 503
AsuHPI GGTGA 2 cut(s) 95, 163
AvaI CYCGRG 1 cut(s) 415
BalI TGGCCA 1 cut(s) 65
BanI GGYRCC 1 cut(s) 503
BanII GRGCYC 1 cut(s) 422
BbvI GCAGC 1 cut(s) 500
BciT130I CCWGG 2 cut(s) 276, 501
BclI TGATCA 1 cut(s) 258
BfaI CTAG 2 cut(s) 38, 381
BfuAI ACCTGC 2 cut(s) 83, 478
BisI GCNGC 1 cut(s) 489
BlsI GCNGC 1 cut(s) 490
BmcAI AGTACT 1 cut(s) 426
Bme1390I CCNGG 2 cut(s) 276, 501
BmeT110I CYCGRG 1 cut(s) 415
BmiI GGNNCC 2 cut(s) 326, 505
BmrFI CCNGG 2 cut(s) 276, 501
BmrI ACTGGG 1 cut(s) 416
BmsI GCATC 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 416
BpmI CTGGAG 1 cut(s) 531
BpuEI CTTGAG 2 cut(s) 415, 430
BsaJI CCNNGG 2 cut(s) 274, 499
BsaXI ACNNNNNCTCC 2 cut(s) 240, 270
Bsc4I CCNNNNNNNGG 3 cut(s) 178, 227, 500
Bse1I ACTGG 1 cut(s) 422
Bse3DI GCAATG 1 cut(s) 304
BseBI CCWGG 2 cut(s) 276, 501
BseDI CCNNGG 2 cut(s) 274, 499
BseGI GGATG 2 cut(s) 259, 546
BseLI CCNNNNNNNGG 3 cut(s) 178, 227, 500
BseMI GCAATG 1 cut(s) 304
BseNI ACTGG 1 cut(s) 422
BseRI GAGGAG 1 cut(s) 206
BseXI GCAGC 1 cut(s) 500
BseYI CCCAGC 3 cut(s) 12, 479, 484
Bsh1285I CGRYCG 1 cut(s) 522
BshFI GGCC 2 cut(s) 5, 65
BshNI GGYRCC 1 cut(s) 503
BsiEI CGRYCG 1 cut(s) 522
BsiHKCI CYCGRG 1 cut(s) 415
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 3 cut(s) 178, 227, 500
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 2 cut(s) 5, 65
BsoBI CYCGRG 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 4 cut(s) 167, 258, 439, 519
BspANI GGCC 2 cut(s) 5, 65
BspLI GGNNCC 2 cut(s) 326, 505
BspMI ACCTGC 2 cut(s) 83, 478
BspPI GGATC 2 cut(s) 162, 434
BspT107I GGYRCC 1 cut(s) 503
BsrDI GCAATG 1 cut(s) 304
BsrI ACTGG 1 cut(s) 422
BssECI CCNNGG 2 cut(s) 274, 499
BssMI GATC 4 cut(s) 167, 258, 439, 519
Bst2UI CCWGG 2 cut(s) 276, 501
Bst4CI ACNGT 2 cut(s) 176, 230
Bst6I CTCTTC 1 cut(s) 13
BstF5I GGATG 2 cut(s) 259, 546
BstKTI GATC 4 cut(s) 170, 261, 442, 522
BstMBI GATC 4 cut(s) 167, 258, 439, 519
BstMCI CGRYCG 1 cut(s) 522
BstNI CCWGG 2 cut(s) 276, 501
BstSCI CCNGG 2 cut(s) 274, 499
BstV1I GCAGC 1 cut(s) 500
BstX2I RGATCY 2 cut(s) 167, 439
BstYI RGATCY 2 cut(s) 167, 439
BsuRI GGCC 2 cut(s) 5, 65
BtsCI GGATG 2 cut(s) 259, 546
BtsIMutI CAGTG 1 cut(s) 181
BveI ACCTGC 2 cut(s) 83, 478
Csp6I GTAC 3 cut(s) 411, 425, 504
CviQI GTAC 3 cut(s) 411, 425, 504
DpnI GATC 4 cut(s) 169, 260, 441, 521
DpnII GATC 4 cut(s) 167, 258, 439, 519
DraIII CACNNNGTG 1 cut(s) 178
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 422
Eco88I CYCGRG 1 cut(s) 415
EcoRII CCWGG 2 cut(s) 274, 499
EcoT38I GRGCYC 1 cut(s) 422
FaiI YATR 5 cut(s) 75, 117, 341, 551, 563
FaqI GGGAC 1 cut(s) 35
FbaI TGATCA 1 cut(s) 258
FblI GTMKAC 1 cut(s) 307
Fnu4HI GCNGC 1 cut(s) 489
FokI GGATG 2 cut(s) 266, 553
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 1 cut(s) 489
FspBI CTAG 2 cut(s) 38, 381
GluI GCNGC 1 cut(s) 489
GsaI CCCAGC 3 cut(s) 16, 483, 488
GsuI CTGGAG 1 cut(s) 531
HaeIII GGCC 2 cut(s) 5, 65
HindIII AAGCTT 2 cut(s) 120, 263
HinfI GANTC 2 cut(s) 350, 398
HphI GGTGA 2 cut(s) 95, 163
Hpy166II GTNNAC 2 cut(s) 308, 467
Hpy188I TCNGA 1 cut(s) 524
Hpy188III TCNNGA 1 cut(s) 510
Hpy8I GTNNAC 2 cut(s) 308, 467
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 2 cut(s) 176, 230
HpyCH4V TGCA 1 cut(s) 297
KpnI GGTACC 1 cut(s) 507
Ksp22I TGATCA 1 cut(s) 258
Kzo9I GATC 4 cut(s) 167, 258, 439, 519
LmnI GCTCC 2 cut(s) 223, 512
Lsp1109I GCAGC 1 cut(s) 500
LweI GCATC 1 cut(s) 259
MaeI CTAG 2 cut(s) 38, 381
MaeIII GTNAC 2 cut(s) 83, 151
MalI GATC 4 cut(s) 169, 260, 441, 521
MboI GATC 4 cut(s) 167, 258, 439, 519
MboII GAAGA 3 cut(s) 348, 354, 360
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 2 cut(s) 167, 439
MhlI GDGCHC 1 cut(s) 422
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 5 cut(s) 42, 102, 139, 236, 546
MluNI TGGCCA 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 7 cut(s) 16, 184, 244, 382, 424, 454, 517
Mox20I TGGCCA 1 cut(s) 65
MscI TGGCCA 1 cut(s) 65
MseI TTAA 3 cut(s) 204, 239, 545
Msp20I TGGCCA 1 cut(s) 65
MspR9I CCNGG 2 cut(s) 276, 501
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 2 cut(s) 276, 501
NdeII GATC 4 cut(s) 167, 258, 439, 519
NlaIV GGNNCC 2 cut(s) 326, 505
NmuCI GTSAC 2 cut(s) 83, 151
PaeR7I CTCGAG 1 cut(s) 415
PaqCI CACCTGC 1 cut(s) 478
PfeI GAWTC 2 cut(s) 350, 398
PflFI GACNNNGTC 1 cut(s) 312
PflMI CCANNNNNTGG 2 cut(s) 178, 500
PkrI GCNGC 1 cut(s) 490
Ple19I CGATCG 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 274, 499
PspFI CCCAGC 3 cut(s) 12, 479, 484
PspGI CCWGG 2 cut(s) 274, 499
PspN4I GGNNCC 2 cut(s) 326, 505
PspXI VCTCGAGB 1 cut(s) 415
PsuI RGATCY 2 cut(s) 167, 439
PsyI GACNNNGTC 1 cut(s) 312
PvuI CGATCG 1 cut(s) 522
RsaI GTAC 3 cut(s) 412, 426, 505
RsaNI GTAC 3 cut(s) 411, 425, 504
SaqAI TTAA 3 cut(s) 204, 239, 545
SatI GCNGC 1 cut(s) 489
Sau3AI GATC 4 cut(s) 167, 258, 439, 519
ScaI AGTACT 1 cut(s) 426
ScrFI CCNGG 2 cut(s) 276, 501
SduI GDGCHC 1 cut(s) 422
SetI ASST 9 cut(s) 18, 97, 124, 220, 267, 336, 416, 472, 509
SfaNI GCATC 1 cut(s) 259
Sfr274I CTCGAG 1 cut(s) 415
SlaI CTCGAG 1 cut(s) 415
SmlI CTYRAG 3 cut(s) 415, 430, 445
SmoI CTYRAG 3 cut(s) 415, 430, 445
Sse9I AATT 5 cut(s) 42, 102, 139, 236, 546
SspMI CTAG 2 cut(s) 38, 381
StyD4I CCNGG 2 cut(s) 274, 499
TaaI ACNGT 2 cut(s) 176, 230
TaqI TCGA 1 cut(s) 416
TasI AATT 5 cut(s) 42, 102, 139, 236, 546
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 2 cut(s) 350, 398
Tru1I TTAA 3 cut(s) 204, 239, 545
Tru9I TTAA 3 cut(s) 204, 239, 545
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 2 cut(s) 83, 151
TseI GCWGC 1 cut(s) 488
Tsp45I GTSAC 2 cut(s) 83, 151
TspDTI ATGAA 4 cut(s) 132, 280, 348, 354
TspRI CASTG 1 cut(s) 181
Tth111I GACNNNGTC 1 cut(s) 312
Van91I CCANNNNNTGG 2 cut(s) 178, 500
XapI RAATTY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 307
XspI CTAG 2 cut(s) 38, 381
ZrmI AGTACT 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.