pycom06g06620

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000318
Physical Location & Seq
Forward (+)
10575014 .. 10575659
646 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g06620.2

Sequence Viewer

Length: 465 bp
ATGATTTCTTCCTGGCTCTTCATAATCCTTACTGTTCTCGCAACTTTTGCGCCTTCGATTTTGGCCACAGATTATGTTGTTGGTGATGACAAAGGGTGGACAATTAATTTCGATTACCAAGCTTGGGCTCGGGGAAAGATGCTCTTTGTTGGCGACAACCTTGTTTTTAACTATCCAAAAGGAGTTCACAACGTGTACAAAGTGAATGGCACTGGCTTTCAAGAATGTTCAGCTCCATTAGACTCTGTGCCATTAACAAGTGGAAAGGATGTGATCAACCTTGCAACCTCCGGAAGAAAATGGTACATTTGCGGTGTTTCGCGGCATTGTTTAGATGCCGGCCAGAAGCTTGCTATAACTGTGTTTCCATCATCCTTTGCTCCTAGCCCTAGCCCCACCTCTGAAAATAGCGACCGGAAGTTTTCTGCTCCCAGCCCTAGTCCCACCTGGGGATACAGCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

155

Amino Acids

16.79

Weight (kDa)

7.69

Isoelectric Point (pI)

45.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 322
AccIII TCCGGA 1 cut(s) 290
AciI CCGC 2 cut(s) 312, 322
AcoI YGGCCR 2 cut(s) 63, 340
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 197, 305
AfiI CCNNNNNNNGG 2 cut(s) 124, 449
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 2 cut(s) 11, 446
AluBI AGCT 3 cut(s) 122, 233, 349
AluI AGCT 3 cut(s) 122, 233, 349
Ama87I CYCGRG 1 cut(s) 129
Aor13HI TCCGGA 1 cut(s) 290
AoxI GGCC 2 cut(s) 63, 340
AseI ATTAAT 1 cut(s) 105
AspLEI GCGC 1 cut(s) 52
AsuHPI GGTGA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 129
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 130
BccI CCATC 1 cut(s) 376
BciT130I CCWGG 2 cut(s) 13, 448
BciVI GTATCC 1 cut(s) 446
BclI TGATCA 1 cut(s) 273
BfaI CTAG 4 cut(s) 384, 390, 438, 463
BfuI GTATCC 1 cut(s) 446
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
Bme1390I CCNGG 2 cut(s) 13, 448
BmeT110I CYCGRG 1 cut(s) 129
BmrFI CCNGG 2 cut(s) 13, 448
BmsI GCATC 2 cut(s) 129, 325
BsaJI CCNNGG 1 cut(s) 447
BsaWI WCCGGW 2 cut(s) 290, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 449
Bse118I RCCGGY 1 cut(s) 338
Bse1I ACTGG 1 cut(s) 217
BseAI TCCGGA 1 cut(s) 290
BseBI CCWGG 2 cut(s) 13, 448
BseDI CCNNGG 1 cut(s) 447
BseGI GGATG 2 cut(s) 274, 371
BseLI CCNNNNNNNGG 2 cut(s) 124, 449
BseNI ACTGG 1 cut(s) 217
BseYI CCCAGC 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 322
Bsh1285I CGRYCG 1 cut(s) 415
BshFI GGCC 2 cut(s) 65, 342
BsiEI CGRYCG 1 cut(s) 415
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 3 cut(s) 291, 339, 415
BslFI GGGAC 1 cut(s) 426
BslI CCNNNNNNNGG 2 cut(s) 124, 449
BsmFI GGGAC 1 cut(s) 426
BsnI GGCC 2 cut(s) 65, 342
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 130
Bsp13I TCCGGA 1 cut(s) 290
Bsp1407I TGTACA 1 cut(s) 195
Bsp143I GATC 1 cut(s) 273
BspACI CCGC 2 cut(s) 312, 322
BspANI GGCC 2 cut(s) 65, 342
BspEI TCCGGA 1 cut(s) 290
BspFNI CGCG 1 cut(s) 322
BspQI GCTCTTC 1 cut(s) 23
BsrFI RCCGGY 1 cut(s) 338
BsrGI TGTACA 1 cut(s) 195
BsrI ACTGG 1 cut(s) 217
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 447
BssMI GATC 1 cut(s) 273
Bst2UI CCWGG 2 cut(s) 13, 448
Bst4CI ACNGT 2 cut(s) 34, 361
Bst6I CTCTTC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 47
BstAUI TGTACA 1 cut(s) 195
BstC8I GCNNGC 2 cut(s) 340, 351
BstF5I GGATG 2 cut(s) 274, 371
BstFNI CGCG 1 cut(s) 322
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 276
BstMBI GATC 1 cut(s) 273
BstMCI CGRYCG 1 cut(s) 415
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 2 cut(s) 13, 448
BstSCI CCNGG 2 cut(s) 11, 446
BstUI CGCG 1 cut(s) 322
BsuI GTATCC 1 cut(s) 446
BsuRI GGCC 2 cut(s) 65, 342
BtsCI GGATG 2 cut(s) 274, 371
BtsIMutI CAGTG 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 340, 351
CfoI GCGC 1 cut(s) 52
Cfr10I RCCGGY 1 cut(s) 338
Csp6I GTAC 2 cut(s) 196, 304
CviQI GTAC 2 cut(s) 196, 304
DpnI GATC 1 cut(s) 275
DpnII GATC 1 cut(s) 273
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 2 cut(s) 63, 340
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 2 cut(s) 11, 446
EcoT38I GRGCYC 1 cut(s) 130
FaiI YATR 3 cut(s) 23, 75, 356
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 426
FbaI TGATCA 1 cut(s) 273
Fnu4HI GCNGC 1 cut(s) 323
FokI GGATG 2 cut(s) 281, 358
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 323
FspBI CTAG 4 cut(s) 384, 390, 438, 463
GlaI GCGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 323
GsaI CCCAGC 1 cut(s) 435
HaeIII GGCC 2 cut(s) 65, 342
HapII CCGG 3 cut(s) 291, 339, 415
HhaI GCGC 1 cut(s) 52
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HindIII AAGCTT 2 cut(s) 120, 347
HinfI GANTC 1 cut(s) 242
HpaII CCGG 3 cut(s) 291, 339, 415
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 3 cut(s) 99, 187, 196
Hpy188I TCNGA 1 cut(s) 403
Hpy188III TCNNGA 2 cut(s) 221, 291
Hpy8I GTNNAC 3 cut(s) 99, 187, 196
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 2 cut(s) 34, 361
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 192
HspAI GCGC 1 cut(s) 50
Kpn2I TCCGGA 1 cut(s) 290
KroI GCCGGC 1 cut(s) 338
KroNI GCCGGC 1 cut(s) 340
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 1 cut(s) 273
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 3 cut(s) 238, 385, 433
LpnPI CCDG 9 cut(s) 25, 198, 304, 352, 356, 428, 433, 445, 460
LweI GCATC 2 cut(s) 129, 325
MaeI CTAG 4 cut(s) 384, 390, 438, 463
MaeII ACGT 1 cut(s) 192
MalI GATC 1 cut(s) 275
MboI GATC 1 cut(s) 273
MboII GAAGA 2 cut(s) 10, 306
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 102, 106
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 236
MnlI CCTC 2 cut(s) 298, 409
Mox20I TGGCCA 1 cut(s) 65
MroI TCCGGA 1 cut(s) 290
MroNI GCCGGC 1 cut(s) 338
MscI TGGCCA 1 cut(s) 65
MseI TTAA 3 cut(s) 105, 168, 254
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 3 cut(s) 291, 339, 415
MspR9I CCNGG 2 cut(s) 13, 448
MvaI CCWGG 2 cut(s) 13, 448
MvnI CGCG 1 cut(s) 322
MwoI GCNNNNNNNGC 1 cut(s) 47
NaeI GCCGGC 1 cut(s) 340
NdeII GATC 1 cut(s) 273
NgoMIV GCCGGC 1 cut(s) 338
PciSI GCTCTTC 1 cut(s) 23
PdiI GCCGGC 1 cut(s) 340
PkrI GCNGC 1 cut(s) 324
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
PshBI ATTAAT 1 cut(s) 105
Psp6I CCWGG 2 cut(s) 11, 446
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 2 cut(s) 11, 446
RsaI GTAC 2 cut(s) 197, 305
RsaNI GTAC 2 cut(s) 196, 304
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 105, 168, 254
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 1 cut(s) 273
SchI GAGTC 1 cut(s) 236
ScrFI CCNGG 2 cut(s) 13, 448
SduI GDGCHC 1 cut(s) 130
SetI ASST 9 cut(s) 124, 162, 195, 235, 282, 290, 351, 401, 449
SfaNI GCATC 2 cut(s) 129, 325
Sse9I AATT 2 cut(s) 102, 106
SsiI CCGC 2 cut(s) 312, 322
SspMI CTAG 4 cut(s) 384, 390, 438, 463
StyD4I CCNGG 2 cut(s) 11, 446
TaaI ACNGT 2 cut(s) 34, 361
TaiI ACGT 1 cut(s) 195
TaqI TCGA 2 cut(s) 56, 111
TasI AATT 2 cut(s) 102, 106
TatI WGTACW 1 cut(s) 195
TauI GCSGC 1 cut(s) 325
Tru1I TTAA 3 cut(s) 105, 168, 254
Tru9I TTAA 3 cut(s) 105, 168, 254
TscAI CASTG 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 1 cut(s) 217
VspI ATTAAT 1 cut(s) 105
XspI CTAG 4 cut(s) 384, 390, 438, 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.