FvH4_4g34040

electron transfer activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000318
Physical Location & Seq
Reverse (-)
32026060 .. 32026604
545 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34040.t1

Sequence Viewer

Length: 456 bp
ATGGCTTCCAACAAACTTGTCACCCTAATCGCCGTTGTTCTGATTCTTCTCCCTGCAGTCGCAATGGCGAAAGATATTGTTGTCGGAGACGATAGCGGCTGGAAACTGGACTTCGATTACCAAGCTTGGGCCAAAGACAAAGTATTTCAAGTTGGTGATACTCTAGTGTTCAAGTACAAACCTCCTGCACACAATGTGTACAAGGTGGACGGAGCTGGATTCCAGGATTGCACGAAACCGGCAAAAAACGAAGCATTGACGAGTGGAAACGACAAAGTAGAACTGAAGACCGCCGGAAATAAATGGTACATTTGCGGCGTTTCCGATCACTGTGATCAGGGCATGAAGCTTACCATTAACGTTATGGAAAAGTCTTCTGCTACTCGTGGGATCATACTCTCTGGAATCCAAGTCTTCGTGGCGGCCATCTTTGCCATCATGGCAATTGTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

152

Amino Acids

16.34

Weight (kDa)

7.67

Isoelectric Point (pI)

16.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 115 3.1e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 96, 291, 315, 422
AclI AACGTT 1 cut(s) 360
AclWI GGATC 1 cut(s) 398
AcoI YGGCCR 1 cut(s) 423
AcuI CTGAAG 1 cut(s) 305
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 3 cut(s) 176, 200, 308
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 2 cut(s) 149, 172
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 3 cut(s) 125, 215, 349
AluI AGCT 3 cut(s) 125, 215, 349
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 398
AoxI GGCC 2 cut(s) 129, 423
AspS9I GGNCC 1 cut(s) 129
AsuHPI GGTGA 2 cut(s) 13, 167
BaeI ACNNNNGTAYC 2 cut(s) 150, 183
BauI CACGAG 1 cut(s) 384
BbsI GAAGAC 3 cut(s) 293, 366, 406
BccI CCATC 2 cut(s) 434, 443
BceAI ACGGC 1 cut(s) 17
BciT130I CCWGG 1 cut(s) 224
BclI TGATCA 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 81
BfaI CTAG 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 54
BglI GCCNNNNNGGC 1 cut(s) 440
BisI GCNGC 3 cut(s) 97, 316, 423
BlsI GCNGC 3 cut(s) 98, 317, 424
Bme1390I CCNGG 1 cut(s) 224
BmgT120I GGNCC 1 cut(s) 129
BmrFI CCNGG 1 cut(s) 224
BpiI GAAGAC 3 cut(s) 293, 366, 406
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 224
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMI GCAATG 1 cut(s) 69
BseNI ACTGG 1 cut(s) 111
BsgI GTGCAG 1 cut(s) 171
BshFI GGCC 2 cut(s) 131, 425
BsiSI CCGG 2 cut(s) 239, 294
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsnI GGCC 2 cut(s) 131, 425
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 3 cut(s) 325, 334, 390
BspACI CCGC 4 cut(s) 96, 291, 315, 422
BspANI GGCC 2 cut(s) 131, 425
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 69
BsrFI RCCGGY 1 cut(s) 238
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 1 cut(s) 111
BssAI RCCGGY 1 cut(s) 238
BssMI GATC 3 cut(s) 325, 334, 390
BssSI CACGAG 1 cut(s) 384
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 198
BstKTI GATC 3 cut(s) 328, 337, 393
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 3 cut(s) 325, 334, 390
BstMWI GCNNNNNNNGC 2 cut(s) 431, 440
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstSFI CTRYAG 1 cut(s) 54
BstV2I GAAGAC 3 cut(s) 293, 366, 406
BsuRI GGCC 2 cut(s) 131, 425
BtsIMutI CAGTG 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 1 cut(s) 129
Csp6I GTAC 3 cut(s) 175, 199, 307
CviAII CATG 2 cut(s) 343, 439
CviJI RGCY 7 cut(s) 5, 99, 125, 131, 215, 349, 425
CviKI_1 RGCY 7 cut(s) 5, 99, 125, 131, 215, 349, 425
CviQI GTAC 3 cut(s) 175, 199, 307
DpnI GATC 3 cut(s) 327, 336, 392
DpnII GATC 3 cut(s) 325, 334, 390
DraIII CACNNNGTG 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 423
Eco57I CTGAAG 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 2 cut(s) 346, 442
FaiI YATR 4 cut(s) 344, 365, 395, 440
FatI CATG 2 cut(s) 342, 438
FbaI TGATCA 1 cut(s) 334
Fnu4HI GCNGC 3 cut(s) 97, 316, 423
Fsp4HI GCNGC 3 cut(s) 97, 316, 423
FspBI CTAG 1 cut(s) 164
GluI GCNGC 3 cut(s) 97, 316, 423
HaeIII GGCC 2 cut(s) 131, 425
HapII CCGG 2 cut(s) 239, 294
Hin1II CATG 2 cut(s) 346, 442
HindIII AAGCTT 2 cut(s) 123, 347
HinfI GANTC 3 cut(s) 43, 219, 405
HpaII CCGG 2 cut(s) 239, 294
HphI GGTGA 2 cut(s) 13, 167
Hpy166II GTNNAC 2 cut(s) 199, 208
Hpy188I TCNGA 3 cut(s) 42, 86, 325
Hpy188III TCNNGA 1 cut(s) 402
Hpy8I GTNNAC 2 cut(s) 199, 208
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4IV ACGT 1 cut(s) 360
HpyCH4V TGCA 3 cut(s) 56, 188, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 440
HpySE526I ACGT 1 cut(s) 360
Hsp92II CATG 2 cut(s) 346, 442
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 3 cut(s) 325, 334, 390
LmnI GCTCC 1 cut(s) 212
MaeI CTAG 1 cut(s) 164
MaeII ACGT 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 19
MalI GATC 3 cut(s) 327, 336, 392
MboI GATC 3 cut(s) 325, 334, 390
MboII GAAGA 4 cut(s) 38, 298, 366, 406
MfeI CAATTG 1 cut(s) 444
MluCI AATT 1 cut(s) 444
MmeI TCCRAC 2 cut(s) 33, 64
MnlI CCTC 1 cut(s) 192
MseI TTAA 1 cut(s) 357
MspI CCGG 2 cut(s) 239, 294
MspR9I CCNGG 1 cut(s) 224
MunI CAATTG 1 cut(s) 444
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 431, 440
NdeII GATC 3 cut(s) 325, 334, 390
NlaIII CATG 2 cut(s) 346, 442
NmuCI GTSAC 1 cut(s) 19
PfeI GAWTC 3 cut(s) 43, 219, 405
PfoI TCCNGGA 1 cut(s) 222
PkrI GCNGC 3 cut(s) 98, 317, 424
Psp1406I AACGTT 1 cut(s) 360
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspPI GGNCC 1 cut(s) 129
PstI CTGCAG 1 cut(s) 58
RsaI GTAC 3 cut(s) 176, 200, 308
RsaNI GTAC 3 cut(s) 175, 199, 307
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 3 cut(s) 97, 316, 423
Sau3AI GATC 3 cut(s) 325, 334, 390
Sau96I GGNCC 1 cut(s) 129
ScrFI CCNGG 1 cut(s) 224
SetI ASST 6 cut(s) 127, 184, 207, 217, 351, 363
SfcI CTRYAG 1 cut(s) 54
Sse9I AATT 1 cut(s) 444
SsiI CCGC 4 cut(s) 96, 291, 315, 422
SspMI CTAG 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 332
TaiI ACGT 1 cut(s) 363
TaqI TCGA 1 cut(s) 114
TasI AATT 1 cut(s) 444
TatI WGTACW 2 cut(s) 174, 198
TauI GCSGC 3 cut(s) 99, 318, 425
TfiI GAWTC 3 cut(s) 43, 219, 405
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 335
TseFI GTSAC 1 cut(s) 19
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 1 cut(s) 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 361
XspI CTAG 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.