FvH4_5g01040

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000318
Physical Location & Seq
Forward (+)
643413 .. 643960
548 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01040.t1

Sequence Viewer

Length: 447 bp
ATGGCCTCTACTCAGCACTTTGTCATCCTTGCCATCATCCTAGCCATTTTTGCCCCTTCAATCCTGGCTACCGATTACATCGTTGGCGACGGTAAAGGTTGGACTATTAACTTCGATTACCAAGCTTGGGCTCAGGGAAAGATGTTCTACGTCGGCGATATCCTCGTTTTCAATTACCCCCAAGGAGTACACAACGTGTACAAAGTGAACGGCACCGGGTTTCAAGAGTGTGCAGTCCCTGCCGGCGTCATGCCTTTAACAAGTGGAAATGATGTGATCAACCTCGCAACCCCAGGAAGAAAATGGTACATTTGTGGTGTTGCTAGGCATTGTTCTGTTGGACAGAAGCTCTTCATCACTGTCATGCCATCGATGGCTCCCAGCCCAAGCCCCCTCTCTGCCTCATCCGCTGTTCCTAGCCCCAGTCCCACCGCCAGATGCAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

149

Amino Acids

15.79

Weight (kDa)

8.39

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 115 4.8e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 212
AciI CCGC 2 cut(s) 408, 432
AcyI GRCGYC 1 cut(s) 246
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 3 cut(s) 189, 200, 308
AfiI CCNNNNNNNGG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 60, 172, 224
AjnI CCWGG 2 cut(s) 63, 292
AluBI AGCT 3 cut(s) 125, 349, 444
AluI AGCT 3 cut(s) 125, 349, 444
AlwNI CAGNNNCTG 1 cut(s) 239
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 441
Asp700I GAANNNNTTC 1 cut(s) 350
AsuC2I CCSGG 1 cut(s) 217
BaeI ACNNNNGTAYC 2 cut(s) 298, 331
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 1 cut(s) 133
BccI CCATC 3 cut(s) 41, 367, 376
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 2 cut(s) 65, 294
BclI TGATCA 1 cut(s) 276
BcnI CCSGG 1 cut(s) 217
BfaI CTAG 4 cut(s) 41, 324, 417, 445
BisI GCNGC 1 cut(s) 442
BlsI GCNGC 1 cut(s) 443
Bme1390I CCNGG 3 cut(s) 65, 217, 294
BmiI GGNNCC 2 cut(s) 214, 378
BmrFI CCNGG 3 cut(s) 65, 217, 294
BmrI ACTGGG 1 cut(s) 417
BmsI GCATC 1 cut(s) 428
BmuI ACTGGG 1 cut(s) 417
Bpu10I CCTNAGC 1 cut(s) 132
BpuMI CCSGG 1 cut(s) 217
Bsa29I ATCGAT 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 181, 292
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 423
BseBI CCWGG 2 cut(s) 65, 294
BseCI ATCGAT 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 181, 292
BseGI GGATG 3 cut(s) 24, 36, 404
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 26, 146
BseNI ACTGG 1 cut(s) 423
BseYI CCCAGC 1 cut(s) 380
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 212
BshVI ATCGAT 1 cut(s) 371
BsiSI CCGG 2 cut(s) 216, 243
BslFI GGGAC 2 cut(s) 221, 411
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 2 cut(s) 221, 411
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 133
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 1 cut(s) 276
BspACI CCGC 2 cut(s) 408, 432
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 25, 145
BspDI ATCGAT 1 cut(s) 371
BspLI GGNNCC 2 cut(s) 214, 378
BspQI GCTCTTC 1 cut(s) 356
BspT107I GGYRCC 1 cut(s) 212
BsrFI RCCGGY 1 cut(s) 242
BsrGI TGTACA 1 cut(s) 198
BsrI ACTGG 1 cut(s) 423
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 181, 292
BssMI GATC 1 cut(s) 276
BssNI GRCGYC 1 cut(s) 246
BssT1I CCWWGG 1 cut(s) 181
Bst2UI CCWGG 2 cut(s) 65, 294
Bst4CI ACNGT 2 cut(s) 92, 361
Bst6I CTCTTC 1 cut(s) 356
BstACI GRCGYC 1 cut(s) 246
BstAPI GCANNNNNTGC 1 cut(s) 239
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 12, 132
BstF5I GGATG 3 cut(s) 24, 36, 404
BstKTI GATC 1 cut(s) 279
BstMBI GATC 1 cut(s) 276
BstMWI GCNNNNNNNGC 3 cut(s) 50, 239, 407
BstNI CCWGG 2 cut(s) 65, 294
BstSCI CCNGG 3 cut(s) 63, 215, 292
Bsu15I ATCGAT 1 cut(s) 371
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 371
BtsCI GGATG 3 cut(s) 24, 36, 404
BtsIMutI CAGTG 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 244
CaiI CAGNNNCTG 1 cut(s) 239
Cfr10I RCCGGY 1 cut(s) 242
ClaI ATCGAT 1 cut(s) 371
CseI GACGC 1 cut(s) 235
Csp6I GTAC 3 cut(s) 188, 199, 307
CviAII CATG 2 cut(s) 250, 364
CviQI GTAC 3 cut(s) 188, 199, 307
DdeI CTNAG 2 cut(s) 12, 132
DpnI GATC 1 cut(s) 278
DpnII GATC 1 cut(s) 276
DraIII CACNNNGTG 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 133
Eco32I GATATC 1 cut(s) 160
EcoRII CCWGG 2 cut(s) 63, 292
EcoRV GATATC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 133
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 2 cut(s) 253, 367
FaiI YATR 2 cut(s) 251, 365
FaqI GGGAC 2 cut(s) 221, 411
FatI CATG 2 cut(s) 249, 363
FbaI TGATCA 1 cut(s) 276
Fnu4HI GCNGC 1 cut(s) 442
FokI GGATG 3 cut(s) 11, 23, 391
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 442
FspBI CTAG 4 cut(s) 41, 324, 417, 445
GluI GCNGC 1 cut(s) 442
GsaI CCCAGC 1 cut(s) 384
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 216, 243
HgaI GACGC 1 cut(s) 235
Hin1I GRCGYC 1 cut(s) 246
Hin1II CATG 2 cut(s) 253, 367
HindIII AAGCTT 1 cut(s) 123
HpaII CCGG 2 cut(s) 216, 243
Hpy166II GTNNAC 3 cut(s) 190, 199, 208
Hpy188III TCNNGA 1 cut(s) 224
Hpy8I GTNNAC 3 cut(s) 190, 199, 208
Hpy99I CGWCG 2 cut(s) 92, 155
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 2 cut(s) 92, 361
HpyCH4IV ACGT 2 cut(s) 150, 195
HpyCH4V TGCA 2 cut(s) 233, 441
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 239, 407
HpyF3I CTNAG 2 cut(s) 12, 132
HpySE526I ACGT 2 cut(s) 150, 195
Hsp92I GRCGYC 1 cut(s) 246
Hsp92II CATG 2 cut(s) 253, 367
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 276
Kzo9I GATC 1 cut(s) 276
LguI GCTCTTC 1 cut(s) 356
LmnI GCTCC 1 cut(s) 382
LweI GCATC 1 cut(s) 428
MaeI CTAG 4 cut(s) 41, 324, 417, 445
MaeII ACGT 2 cut(s) 150, 195
MalI GATC 1 cut(s) 278
MboI GATC 1 cut(s) 276
MboII GAAGA 2 cut(s) 309, 343
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 1 cut(s) 172
MmeI TCCRAC 2 cut(s) 80, 319
MnlI CCTC 5 cut(s) 16, 173, 293, 404, 412
MroNI GCCGGC 1 cut(s) 242
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 2 cut(s) 108, 257
MslI CAYNNNNRTG 1 cut(s) 362
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 2 cut(s) 216, 243
MspR9I CCNGG 3 cut(s) 65, 217, 294
MvaI CCWGG 2 cut(s) 65, 294
MwoI GCNNNNNNNGC 3 cut(s) 50, 239, 407
NaeI GCCGGC 1 cut(s) 244
NciI CCSGG 1 cut(s) 217
NdeII GATC 1 cut(s) 276
NgoMIV GCCGGC 1 cut(s) 242
NlaIII CATG 2 cut(s) 253, 367
NlaIV GGNNCC 2 cut(s) 214, 378
PciSI GCTCTTC 1 cut(s) 356
PdiI GCCGGC 1 cut(s) 244
PdmI GAANNNNTTC 1 cut(s) 350
PkrI GCNGC 1 cut(s) 443
Psp6I CCWGG 2 cut(s) 63, 292
PspFI CCCAGC 1 cut(s) 380
PspGI CCWGG 2 cut(s) 63, 292
PspN4I GGNNCC 2 cut(s) 214, 378
PstNI CAGNNNCTG 1 cut(s) 239
RsaI GTAC 3 cut(s) 189, 200, 308
RsaNI GTAC 3 cut(s) 188, 199, 307
RseI CAYNNNNRTG 1 cut(s) 362
SapI GCTCTTC 1 cut(s) 356
SaqAI TTAA 2 cut(s) 108, 257
SatI GCNGC 1 cut(s) 442
Sau3AI GATC 1 cut(s) 276
ScrFI CCNGG 3 cut(s) 65, 217, 294
SduI GDGCHC 1 cut(s) 133
SetI ASST 7 cut(s) 100, 127, 153, 198, 285, 351, 446
SfaNI GCATC 1 cut(s) 428
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 1 cut(s) 172
SsiI CCGC 2 cut(s) 408, 432
SspMI CTAG 4 cut(s) 41, 324, 417, 445
StyD4I CCNGG 3 cut(s) 63, 215, 292
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 2 cut(s) 92, 361
TaiI ACGT 2 cut(s) 153, 198
TaqI TCGA 2 cut(s) 114, 371
TasI AATT 1 cut(s) 172
TatI WGTACW 2 cut(s) 187, 198
Tru1I TTAA 2 cut(s) 108, 257
Tru9I TTAA 2 cut(s) 108, 257
TscAI CASTG 1 cut(s) 364
TseI GCWGC 1 cut(s) 441
TspDTI ATGAA 1 cut(s) 343
TspRI CASTG 1 cut(s) 364
XcmI CCANNNNNNNNNTGG 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 4 cut(s) 41, 324, 417, 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.