MD04G1075600.v1.1

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000318
Physical Location & Seq
Reverse (-)
10105517 .. 10108120
2604 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1075600.v1.1.491

Sequence Viewer

Length: 441 bp
ATGGCCACTTCCCAGCTCTTCCTAATCCTAGCCATTATAGCAATTTTTGCATCTTCAATTTTAGCAACAGATTATGTTGTTGGCAACGACAAAGGGTGGACGATTAATTTTGATTACCAAGCTTGGGCTCGGGGAAAGATGTTCTATGTTGGTGACAATCTTGGCGCCCACAATGTGTTCAAAGTGAACGGCACAGGCTTTCAGGAATGCTTAGACTCTGTGCCATTAACAAGTGGAAGGGATGTGATCAACCTTGCAACCCCAGGAAGAAAATGGTACGTTTGTGGTGTTTCTCAGCACTGTTTAGATGCTGGCCAGAAGCTTGCTATAACTGTGTTTCCATCATCCTTTGCTCCTAGCCCTAGTCCCACCTGGGGATACAGCGACCAGACAGAGAATGCTGCTTCTAGCCCTGGCCCCACCTGGGGATACATCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

147

Amino Acids

15.78

Weight (kDa)

5.46

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 102 1.3e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AcoI YGGCCR 2 cut(s) 3, 313
AcyI GRCGYC 1 cut(s) 165
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 4 cut(s) 124, 374, 424, 425
AgsI TTSAA 2 cut(s) 57, 181
AjnI CCWGG 4 cut(s) 262, 371, 412, 422
AluBI AGCT 3 cut(s) 16, 122, 322
AluI AGCT 3 cut(s) 16, 122, 322
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 3 cut(s) 3, 313, 415
ApeKI GCWGC 1 cut(s) 401
AseI ATTAAT 1 cut(s) 105
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 1 cut(s) 164
AvaI CYCGRG 1 cut(s) 129
BaeI ACNNNNGTAYC 2 cut(s) 268, 301
BalI TGGCCA 2 cut(s) 5, 315
BanI GGYRCC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 388
BccI CCATC 1 cut(s) 349
BceAI ACGGC 1 cut(s) 205
BciT130I CCWGG 4 cut(s) 264, 373, 414, 424
BciVI GTATCC 2 cut(s) 371, 422
BclI TGATCA 1 cut(s) 246
BfaI CTAG 4 cut(s) 29, 357, 363, 408
BfoI RGCGCY 1 cut(s) 168
BfuI GTATCC 2 cut(s) 371, 422
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 4 cut(s) 264, 373, 414, 424
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 2 cut(s) 166, 418
BmrFI CCNGG 4 cut(s) 264, 373, 414, 424
BmsI GCATC 2 cut(s) 59, 298
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 4 cut(s) 262, 372, 412, 423
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 374, 424, 425
BseBI CCWGG 4 cut(s) 264, 373, 414, 424
BseDI CCNNGG 4 cut(s) 262, 372, 412, 423
BseGI GGATG 2 cut(s) 247, 344
BseLI CCNNNNNNNGG 4 cut(s) 124, 374, 424, 425
BseMII CTCAG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 388
BseYI CCCAGC 1 cut(s) 12
BshFI GGCC 3 cut(s) 5, 315, 417
BshNI GGYRCC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 351
BslI CCNNNNNNNGG 4 cut(s) 124, 374, 424, 425
BsmFI GGGAC 1 cut(s) 351
BsmI GAATGC 2 cut(s) 212, 403
BsnI GGCC 3 cut(s) 5, 315, 417
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 246
BspANI GGCC 3 cut(s) 5, 315, 417
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 2 cut(s) 166, 418
BspQI GCTCTTC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 164
BssECI CCNNGG 4 cut(s) 262, 372, 412, 423
BssMI GATC 1 cut(s) 246
BssNI GRCGYC 1 cut(s) 165
Bst2UI CCWGG 4 cut(s) 264, 373, 414, 424
Bst4CI ACNGT 2 cut(s) 302, 334
Bst6I CTCTTC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 313, 324
BstDEI CTNAG 2 cut(s) 211, 294
BstF5I GGATG 2 cut(s) 247, 344
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstKTI GATC 1 cut(s) 249
BstMBI GATC 1 cut(s) 246
BstMWI GCNNNNNNNGC 2 cut(s) 38, 47
BstNI CCWGG 4 cut(s) 264, 373, 414, 424
BstSCI CCNGG 4 cut(s) 262, 371, 412, 422
BstV1I GCAGC 1 cut(s) 388
BsuI GTATCC 2 cut(s) 371, 422
BsuRI GGCC 3 cut(s) 5, 315, 417
BtsCI GGATG 2 cut(s) 247, 344
BtsIMutI CAGTG 1 cut(s) 298
Cac8I GCNNGC 2 cut(s) 313, 324
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 1 cut(s) 277
CviQI GTAC 1 cut(s) 277
DdeI CTNAG 2 cut(s) 211, 294
DinI GGCGCC 1 cut(s) 166
DpnI GATC 1 cut(s) 248
DpnII GATC 1 cut(s) 246
DraIII CACNNNGTG 1 cut(s) 175
EaeI YGGCCR 2 cut(s) 3, 313
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 130
Eco88I CYCGRG 1 cut(s) 129
EcoRII CCWGG 4 cut(s) 262, 371, 412, 422
EcoT38I GRGCYC 1 cut(s) 130
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
FaiI YATR 4 cut(s) 38, 75, 147, 329
FaqI GGGAC 1 cut(s) 351
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 2 cut(s) 254, 331
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 402
FspBI CTAG 4 cut(s) 29, 357, 363, 408
GlaI GCGC 1 cut(s) 166
GluI GCNGC 1 cut(s) 402
GsaI CCCAGC 1 cut(s) 16
HaeII RGCGCY 1 cut(s) 168
HaeIII GGCC 3 cut(s) 5, 315, 417
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HindIII AAGCTT 2 cut(s) 120, 320
HinfI GANTC 1 cut(s) 215
HphI GGTGA 1 cut(s) 164
Hpy166II GTNNAC 2 cut(s) 99, 187
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 2 cut(s) 99, 187
HpyAV CCTTC 1 cut(s) 231
HpyCH4III ACNGT 2 cut(s) 302, 334
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 50, 257
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 47
HpyF3I CTNAG 2 cut(s) 211, 294
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 1 cut(s) 165
KasI GGCGCC 1 cut(s) 164
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 1 cut(s) 246
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 2 cut(s) 59, 298
MaeI CTAG 4 cut(s) 29, 357, 363, 408
MaeII ACGT 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 248
MboI GATC 1 cut(s) 246
MboII GAAGA 3 cut(s) 10, 45, 279
MhlI GDGCHC 1 cut(s) 130
MlsI TGGCCA 2 cut(s) 5, 315
MluCI AATT 3 cut(s) 42, 57, 106
MluNI TGGCCA 2 cut(s) 5, 315
Mly113I GGCGCC 1 cut(s) 165
MlyI GAGTC 1 cut(s) 209
Mox20I TGGCCA 2 cut(s) 5, 315
MscI TGGCCA 2 cut(s) 5, 315
MseI TTAA 2 cut(s) 105, 227
Msp20I TGGCCA 2 cut(s) 5, 315
MspR9I CCNGG 4 cut(s) 264, 373, 414, 424
Mva1269I GAATGC 2 cut(s) 212, 403
MvaI CCWGG 4 cut(s) 264, 373, 414, 424
MwoI GCNNNNNNNGC 2 cut(s) 38, 47
NarI GGCGCC 1 cut(s) 165
NdeII GATC 1 cut(s) 246
NlaIV GGNNCC 2 cut(s) 166, 418
NmuCI GTSAC 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 23
PctI GAATGC 2 cut(s) 212, 403
PkrI GCNGC 1 cut(s) 403
PleI GAGTC 1 cut(s) 209
PluTI GGCGCC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 209
PshBI ATTAAT 1 cut(s) 105
Psp6I CCWGG 4 cut(s) 262, 371, 412, 422
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 4 cut(s) 262, 371, 412, 422
PspN4I GGNNCC 2 cut(s) 166, 418
PspPI GGNCC 1 cut(s) 416
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 105, 227
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 1 cut(s) 246
Sau96I GGNCC 1 cut(s) 416
SchI GAGTC 1 cut(s) 209
ScrFI CCNGG 4 cut(s) 264, 373, 414, 424
SduI GDGCHC 1 cut(s) 130
SetI ASST 7 cut(s) 18, 124, 255, 282, 324, 374, 425
SfaNI GCATC 2 cut(s) 59, 298
SfoI GGCGCC 1 cut(s) 166
Sse9I AATT 3 cut(s) 42, 57, 106
SspDI GGCGCC 1 cut(s) 164
SspMI CTAG 4 cut(s) 29, 357, 363, 408
StyD4I CCNGG 4 cut(s) 262, 371, 412, 422
TaaI ACNGT 2 cut(s) 302, 334
TaiI ACGT 1 cut(s) 282
TasI AATT 3 cut(s) 42, 57, 106
Tru1I TTAA 2 cut(s) 105, 227
Tru9I TTAA 2 cut(s) 105, 227
TscAI CASTG 1 cut(s) 305
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 1 cut(s) 152
TspRI CASTG 1 cut(s) 305
VspI ATTAAT 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XspI CTAG 4 cut(s) 29, 357, 363, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.