Rh7DG188600

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000318
Physical Location & Seq
Reverse (-)
17473051 .. 17473600
550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG188600.1

Sequence Viewer

Length: 447 bp
ATGGCCTCTTCCCAGCTTTTCATTATCCTGGCCATTCTAGCAATCGTTGCCCCTTCAGTTTTGGCAACAGATTATGTTGTTGGTGATGACAAAGGTTGGACAACTAACTTTGATTACCAAGCTTGGGCTCGGGGAAAGATGTTCGTTGTTGGCGACAACCTTGTTTTTCACTATCCAGAAGGAGTGCACAATGTACTCAAAGTGAACGGCACTGGGTTTCAACAATGTGCAGGTCCTGCCAGCACTGCGCCATTAACAAGTGGTCATGATGTGATAACCCTAGCAAACCCAGGGAGGAAGTGGTACATTTGTGGTGCTCCTAACCATTGTGCTGCTGGGGGACAGAAGCTTGCCATCACTGTAATGCCATCGTCGTTTGCTCCTAGCCCAAGCCCTCTCTCCGCAAAATACGTCGCTTCTAGCCCTAGCCCCACCCCTGGATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

148

Amino Acids

15.45

Weight (kDa)

7.7

Isoelectric Point (pI)

45.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 6.3e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 221
AciI CCGC 1 cut(s) 402
AcoI YGGCCR 1 cut(s) 30
AcuI CTGAAG 1 cut(s) 39
AfaI GTAC 2 cut(s) 195, 305
AfiI CCNNNNNNNGG 2 cut(s) 124, 437
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 3 cut(s) 27, 289, 436
AluBI AGCT 3 cut(s) 16, 122, 349
AluI AGCT 3 cut(s) 16, 122, 349
Alw21I GWGCWC 2 cut(s) 189, 319
Alw44I GTGCAC 1 cut(s) 185
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 2 cut(s) 3, 30
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 1 cut(s) 332
AspLEI GCGC 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 233
BaeGI GKGCMC 1 cut(s) 189
BaeI ACNNNNGTAYC 2 cut(s) 295, 328
BalI TGGCCA 1 cut(s) 32
BanII GRGCYC 1 cut(s) 130
Bbv12I GWGCWC 2 cut(s) 189, 319
BbvI GCAGC 1 cut(s) 319
BccI CCATC 2 cut(s) 362, 376
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 3 cut(s) 29, 291, 438
BfaI CTAG 5 cut(s) 38, 281, 384, 420, 426
BfuAI ACCTGC 1 cut(s) 221
BisI GCNGC 1 cut(s) 333
BlsI GCNGC 1 cut(s) 334
Bme1390I CCNGG 3 cut(s) 29, 291, 438
Bme18I GGWCC 1 cut(s) 233
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 1 cut(s) 233
BmrFI CCNGG 3 cut(s) 29, 291, 438
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 431
BmuI ACTGGG 1 cut(s) 222
BsaJI CCNNGG 3 cut(s) 289, 290, 436
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 437
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 3 cut(s) 29, 291, 438
BseDI CCNNGG 3 cut(s) 289, 290, 436
BseGI GGATG 1 cut(s) 446
BseLI CCNNNNNNNGG 2 cut(s) 124, 437
BseNI ACTGG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 1 cut(s) 319
BseYI CCCAGC 2 cut(s) 12, 335
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 2 cut(s) 5, 32
BsiHKAI GWGCWC 2 cut(s) 189, 319
BsiHKCI CYCGRG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 354
BslI CCNNNNNNNGG 2 cut(s) 124, 437
BsmFI GGGAC 1 cut(s) 354
BsnI GGCC 2 cut(s) 5, 32
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 3 cut(s) 130, 189, 319
BspACI CCGC 1 cut(s) 402
BspANI GGCC 2 cut(s) 5, 32
BspHI TCATGA 1 cut(s) 265
BspMI ACCTGC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 3 cut(s) 289, 290, 436
Bst2UI CCWGG 3 cut(s) 29, 291, 438
Bst4CI ACNGT 1 cut(s) 361
Bst6I CTCTTC 1 cut(s) 13
BstAPI GCANNNNNTGC 2 cut(s) 47, 236
BstC8I GCNNGC 2 cut(s) 241, 351
BstF5I GGATG 1 cut(s) 446
BstHHI GCGC 1 cut(s) 250
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 236, 245
BstNI CCWGG 3 cut(s) 29, 291, 438
BstSCI CCNGG 3 cut(s) 27, 289, 436
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 319
BsuRI GGCC 2 cut(s) 5, 32
BtsCI GGATG 1 cut(s) 446
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 3 cut(s) 210, 243, 357
BveI ACCTGC 1 cut(s) 221
Cac8I GCNNGC 2 cut(s) 241, 351
CaiI CAGNNNCTG 1 cut(s) 236
CciI TCATGA 1 cut(s) 265
CfoI GCGC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 233
Csp6I GTAC 2 cut(s) 194, 304
CviAII CATG 1 cut(s) 266
CviQI GTAC 2 cut(s) 194, 304
EaeI YGGCCR 1 cut(s) 30
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 39
Eco88I CYCGRG 1 cut(s) 129
EcoO109I RGGNCCY 1 cut(s) 233
EcoRII CCWGG 3 cut(s) 27, 289, 436
EcoT38I GRGCYC 1 cut(s) 130
FaeI CATG 1 cut(s) 269
FaiI YATR 2 cut(s) 75, 267
FaqI GGGAC 1 cut(s) 354
FatI CATG 1 cut(s) 265
Fnu4HI GCNGC 1 cut(s) 333
FriOI GRGCYC 1 cut(s) 130
Fsp4HI GCNGC 1 cut(s) 333
FspBI CTAG 5 cut(s) 38, 281, 384, 420, 426
GlaI GCGC 1 cut(s) 249
GluI GCNGC 1 cut(s) 333
GsaI CCCAGC 2 cut(s) 16, 339
HaeIII GGCC 2 cut(s) 5, 32
HhaI GCGC 1 cut(s) 250
Hin1II CATG 1 cut(s) 269
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 2 cut(s) 120, 347
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 187, 205
Hpy188III TCNNGA 2 cut(s) 176, 266
Hpy8I GTNNAC 2 cut(s) 187, 205
Hpy99I CGWCG 2 cut(s) 376, 416
HpyAV CCTTC 2 cut(s) 63, 173
HpyCH4III ACNGT 1 cut(s) 361
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 2 cut(s) 187, 230
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 236, 245
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 1 cut(s) 269
HspAI GCGC 1 cut(s) 248
LmnI GCTCC 2 cut(s) 322, 385
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 1 cut(s) 431
MaeI CTAG 5 cut(s) 38, 281, 384, 420, 426
MaeII ACGT 1 cut(s) 411
MhlI GDGCHC 3 cut(s) 130, 189, 319
MlsI TGGCCA 1 cut(s) 32
MluNI TGGCCA 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 3 cut(s) 16, 288, 405
Mox20I TGGCCA 1 cut(s) 32
MscI TGGCCA 1 cut(s) 32
MseI TTAA 1 cut(s) 254
MslI CAYNNNNRTG 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 32
MspR9I CCNGG 3 cut(s) 29, 291, 438
MvaI CCWGG 3 cut(s) 29, 291, 438
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 236, 245
NlaIII CATG 1 cut(s) 269
PagI TCATGA 1 cut(s) 265
PasI CCCWGGG 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PkrI GCNGC 1 cut(s) 334
PpuMI RGGWCCY 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 3 cut(s) 27, 289, 436
PspFI CCCAGC 2 cut(s) 12, 335
PspGI CCWGG 3 cut(s) 27, 289, 436
PspPI GGNCC 1 cut(s) 233
PspPPI RGGWCCY 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 236
RsaI GTAC 2 cut(s) 195, 305
RsaNI GTAC 2 cut(s) 194, 304
RseI CAYNNNNRTG 1 cut(s) 362
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 1 cut(s) 333
Sau96I GGNCC 1 cut(s) 233
ScrFI CCNGG 3 cut(s) 29, 291, 438
SduI GDGCHC 3 cut(s) 130, 189, 319
SetI ASST 7 cut(s) 18, 97, 124, 162, 235, 351, 414
SfaNI GCATC 1 cut(s) 431
SinI GGWCC 1 cut(s) 233
SmiMI CAYNNNNRTG 1 cut(s) 362
SsiI CCGC 1 cut(s) 402
SspMI CTAG 5 cut(s) 38, 281, 384, 420, 426
StyD4I CCNGG 3 cut(s) 27, 289, 436
TaaI ACNGT 1 cut(s) 361
TaiI ACGT 1 cut(s) 414
TatI WGTACW 1 cut(s) 193
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 3 cut(s) 217, 250, 364
TseI GCWGC 1 cut(s) 332
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 3 cut(s) 217, 250, 364
VneI GTGCAC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 233
XcmI CCANNNNNNNNNTGG 2 cut(s) 297, 332
XspI CTAG 5 cut(s) 38, 281, 384, 420, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.