Rroxscaffold_3G00256110

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000318
Physical Location & Seq
Forward (+)
50521904 .. 50522327
424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00256110.1

Sequence Viewer

Length: 315 bp
ATGGGATCTTCCCAGCTTTTCATTATCCTGGTCACTCTAGCTATTGCAGCCCCCTTAACCTTGGCAACAGATTATGTTGTTGGTGATGACAAAGGTTGGACTACCAACTTCGATTACCAAGCTTGGGCTCGGGGAAAGATGTTCGTCGTTGGCGACAACCTTGTTTTTCACTATCCAGAAGGAGTGCACAATGTGCTCAAAGTGAACGGCACCGGGTTTCAACAATGTGCAGCTCCTGCCAGCACTGCGCCATTAACAAGATGTAATAACCCTAGCAACCCCAGGGAGGAAGTGGTACATTTGTGGAGCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

104

Amino Acids

11.34

Weight (kDa)

5.79

Isoelectric Point (pI)

30.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 86 2e-14 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 209
AclWI GGATC 1 cut(s) 13
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 124, 286
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 2 cut(s) 27, 281
AluBI AGCT 5 cut(s) 16, 41, 122, 233, 309
AluI AGCT 5 cut(s) 16, 41, 122, 233, 309
Alw21I GWGCWC 3 cut(s) 189, 198, 311
Alw44I GTGCAC 1 cut(s) 185
AlwI GGATC 1 cut(s) 13
AlwNI CAGNNNCTG 1 cut(s) 236
Ama87I CYCGRG 1 cut(s) 129
ApaLI GTGCAC 1 cut(s) 185
ApeKI GCWGC 2 cut(s) 47, 230
AspLEI GCGC 1 cut(s) 250
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 129
BaeGI GKGCMC 1 cut(s) 189
BaeI ACNNNNGTAYC 1 cut(s) 287
BanI GGYRCC 1 cut(s) 209
BanII GRGCYC 2 cut(s) 130, 311
Bbv12I GWGCWC 3 cut(s) 189, 198, 311
BbvI GCAGC 2 cut(s) 59, 242
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 2 cut(s) 29, 283
BcnI CCSGG 1 cut(s) 214
BfaI CTAG 2 cut(s) 38, 273
BisI GCNGC 2 cut(s) 48, 231
BlsI GCNGC 2 cut(s) 49, 232
Bme1390I CCNGG 3 cut(s) 29, 214, 283
BmeT110I CYCGRG 1 cut(s) 129
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 3 cut(s) 29, 214, 283
BpuMI CCSGG 1 cut(s) 214
BsaJI CCNNGG 3 cut(s) 60, 281, 282
Bsc4I CCNNNNNNNGG 2 cut(s) 124, 286
BseBI CCWGG 2 cut(s) 29, 283
BseDI CCNNGG 3 cut(s) 60, 281, 282
BseLI CCNNNNNNNGG 2 cut(s) 124, 286
BseSI GKGCMC 1 cut(s) 189
BseXI GCAGC 2 cut(s) 59, 242
BseYI CCCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 249
BshNI GGYRCC 1 cut(s) 209
BsiHKAI GWGCWC 3 cut(s) 189, 198, 311
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 2 cut(s) 124, 286
BsoBI CYCGRG 1 cut(s) 129
Bsp1286I GDGCHC 4 cut(s) 130, 189, 198, 311
Bsp143I GATC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 211
BspPI GGATC 1 cut(s) 13
BspT107I GGYRCC 1 cut(s) 209
BssECI CCNNGG 3 cut(s) 60, 281, 282
BssMI GATC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 29, 283
BstAPI GCANNNNNTGC 2 cut(s) 193, 236
BstC8I GCNNGC 1 cut(s) 241
BstHHI GCGC 1 cut(s) 250
BstKTI GATC 1 cut(s) 8
BstMBI GATC 1 cut(s) 5
BstMWI GCNNNNNNNGC 4 cut(s) 47, 193, 236, 245
BstNI CCWGG 2 cut(s) 29, 283
BstSCI CCNGG 3 cut(s) 27, 212, 281
BstSLI GKGCMC 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 59, 242
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 243
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 241
CaiI CAGNNNCTG 1 cut(s) 236
CfoI GCGC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 296
CviJI RGCY 7 cut(s) 16, 41, 50, 122, 128, 233, 309
CviKI_1 RGCY 7 cut(s) 16, 41, 50, 122, 128, 233, 309
CviQI GTAC 1 cut(s) 296
DpnI GATC 1 cut(s) 7
DpnII GATC 1 cut(s) 5
DraIII CACNNNGTG 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 60
Eco24I GRGCYC 2 cut(s) 130, 311
Eco53kI GAGCTC 1 cut(s) 309
Eco88I CYCGRG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 309
EcoRII CCWGG 2 cut(s) 27, 281
EcoT14I CCWWGG 1 cut(s) 60
EcoT38I GRGCYC 2 cut(s) 130, 311
ErhI CCWWGG 1 cut(s) 60
FaiI YATR 1 cut(s) 75
Fnu4HI GCNGC 2 cut(s) 48, 231
FriOI GRGCYC 2 cut(s) 130, 311
Fsp4HI GCNGC 2 cut(s) 48, 231
FspBI CTAG 2 cut(s) 38, 273
GlaI GCGC 1 cut(s) 249
GluI GCNGC 2 cut(s) 48, 231
GsaI CCCAGC 1 cut(s) 16
HapII CCGG 1 cut(s) 213
HhaI GCGC 1 cut(s) 250
Hin6I GCGC 1 cut(s) 248
HinP1I GCGC 1 cut(s) 248
HindIII AAGCTT 1 cut(s) 120
HpaII CCGG 1 cut(s) 213
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 2 cut(s) 187, 205
Hpy188III TCNNGA 1 cut(s) 176
Hpy8I GTNNAC 2 cut(s) 187, 205
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 47, 187, 230
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 193, 236, 245
HspAI GCGC 1 cut(s) 248
Kzo9I GATC 1 cut(s) 5
LmnI GCTCC 3 cut(s) 238, 306, 314
LpnPI CCDG 9 cut(s) 14, 26, 41, 189, 226, 249, 253, 268, 295
Lsp1109I GCAGC 2 cut(s) 59, 242
MaeI CTAG 2 cut(s) 38, 273
MaeIII GTNAC 1 cut(s) 31
MalI GATC 1 cut(s) 7
MboI GATC 1 cut(s) 5
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 4 cut(s) 130, 189, 198, 311
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 1 cut(s) 280
MseI TTAA 2 cut(s) 56, 254
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 3 cut(s) 29, 214, 283
MvaI CCWGG 2 cut(s) 29, 283
MwoI GCNNNNNNNGC 4 cut(s) 47, 193, 236, 245
NciI CCSGG 1 cut(s) 214
NdeII GATC 1 cut(s) 5
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 1 cut(s) 31
PasI CCCWGGG 1 cut(s) 282
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PkrI GCNGC 2 cut(s) 49, 232
Psp124BI GAGCTC 1 cut(s) 311
Psp6I CCWGG 2 cut(s) 27, 281
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 2 cut(s) 27, 281
PspN4I GGNNCC 1 cut(s) 211
PstNI CAGNNNCTG 1 cut(s) 236
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
SacI GAGCTC 1 cut(s) 311
SaqAI TTAA 2 cut(s) 56, 254
SatI GCNGC 2 cut(s) 48, 231
Sau3AI GATC 1 cut(s) 5
ScrFI CCNGG 3 cut(s) 29, 214, 283
SduI GDGCHC 4 cut(s) 130, 189, 198, 311
SetI ASST 8 cut(s) 18, 43, 62, 97, 124, 162, 235, 311
SspMI CTAG 2 cut(s) 38, 273
SstI GAGCTC 1 cut(s) 311
StyD4I CCNGG 3 cut(s) 27, 212, 281
StyI CCWWGG 1 cut(s) 60
TaqI TCGA 1 cut(s) 111
Tru1I TTAA 2 cut(s) 56, 254
Tru9I TTAA 2 cut(s) 56, 254
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 2 cut(s) 47, 230
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 1 cut(s) 250
VneI GTGCAC 1 cut(s) 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 289
XspI CTAG 2 cut(s) 38, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.