MD04G1075900.v1.1

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000318
Physical Location & Seq
Reverse (-)
10218412 .. 10219125
714 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1075900.v1.1.491

Sequence Viewer

Length: 513 bp
ATGGCCTCTTCCCATCTATTCATTATCCTTGTCACTCTAGCAATTGTTGCCCCTTCTATTTTGGCTACAGATTTTGTTGTTGGGGACGATAAAGGTTGGACTATCAATTTCGATTACCAAACTTGGGCACAAGGAAAACAGTTCTATGTTGGCGACAAACTTGTTTTTAAGTATCCAAAAGGAGTCCACAATGTGTACAAAGTGAATGGCACTGAATTTCAACAATGTGCAGCTCCATTAGACAGTGTGCCATTAACTAGTGGAAACGATGTGGTCACCCTTGCAACCGCAGGAAGAAAATGGTACATTTGCGGTGTTGGTCAGCATTGTAAAACGGGGAATCAGAAGCTTCTTATAACTGTGATGCCATCATCTGCTCCTAGCCCAAGTCCCAGTTATACTGCCTCAAGCCCAAGCACCTCAATCCCCTACACCTCTGCAGCAATAAGTGTTGAAACAAGATATGGGTGGATGATGGTTATACTTGGCCTTCTCGTGATGCTGACGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

171

Amino Acids

18.34

Weight (kDa)

8.41

Isoelectric Point (pI)

32.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 2e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AciI CCGC 2 cut(s) 288, 312
AcsI RAATTY 1 cut(s) 215
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 197, 305
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 2 cut(s) 221, 455
AhlI ACTAGT 1 cut(s) 257
AluBI AGCT 2 cut(s) 233, 349
AluI AGCT 2 cut(s) 233, 349
AoxI GGCC 2 cut(s) 3, 487
ApeKI GCWGC 2 cut(s) 230, 440
ApoI RAATTY 1 cut(s) 215
AsuHPI GGTGA 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 130
BauI CACGAG 1 cut(s) 494
BbvI GCAGC 2 cut(s) 242, 452
BccI CCATC 3 cut(s) 21, 376, 469
BciVI GTATCC 1 cut(s) 183
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 3 cut(s) 38, 258, 381
BfmI CTRYAG 2 cut(s) 66, 438
BfuI GTATCC 1 cut(s) 183
BisI GCNGC 2 cut(s) 231, 441
BlsI GCNGC 2 cut(s) 232, 442
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 354, 489
BmuI ACTGGG 1 cut(s) 387
BpuEI CTTGAG 1 cut(s) 391
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 393
BseGI GGATG 1 cut(s) 477
BseLI CCNNNNNNNGG 1 cut(s) 124
BseNI ACTGG 1 cut(s) 393
BseSI GKGCMC 1 cut(s) 130
BseXI GCAGC 2 cut(s) 242, 452
BsgI GTGCAG 1 cut(s) 249
BshFI GGCC 2 cut(s) 5, 489
BslFI GGGAC 2 cut(s) 98, 375
BslI CCNNNNNNNGG 1 cut(s) 124
BsmFI GGGAC 2 cut(s) 98, 375
BsnI GGCC 2 cut(s) 5, 489
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 195
BspACI CCGC 2 cut(s) 288, 312
BspANI GGCC 2 cut(s) 5, 489
BspMAI CTGCAG 1 cut(s) 442
BsrGI TGTACA 1 cut(s) 195
BsrI ACTGG 1 cut(s) 393
BssSI CACGAG 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 494
Bst4CI ACNGT 3 cut(s) 141, 245, 361
Bst6I CTCTTC 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 47
BstAUI TGTACA 1 cut(s) 195
BstEII GGTNACC 1 cut(s) 274
BstF5I GGATG 1 cut(s) 477
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstPI GGTNACC 1 cut(s) 274
BstSFI CTRYAG 2 cut(s) 66, 438
BstSLI GKGCMC 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 242, 452
BsuI GTATCC 1 cut(s) 183
BsuRI GGCC 2 cut(s) 5, 489
BtsCI GGATG 1 cut(s) 477
BtsIMutI CAGTG 2 cut(s) 210, 250
Csp6I GTAC 2 cut(s) 196, 304
CviJI RGCY 8 cut(s) 5, 65, 233, 349, 384, 411, 489, 509
CviKI_1 RGCY 8 cut(s) 5, 65, 233, 349, 384, 411, 489, 509
CviQI GTAC 2 cut(s) 196, 304
DraIII CACNNNGTG 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco91I GGTNACC 1 cut(s) 274
EcoO65I GGTNACC 1 cut(s) 274
FaiI YATR 5 cut(s) 147, 356, 399, 465, 482
FaqI GGGAC 2 cut(s) 98, 375
Fnu4HI GCNGC 2 cut(s) 231, 441
FokI GGATG 1 cut(s) 484
Fsp4HI GCNGC 2 cut(s) 231, 441
FspBI CTAG 3 cut(s) 38, 258, 381
GluI GCNGC 2 cut(s) 231, 441
HaeIII GGCC 2 cut(s) 5, 489
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 2 cut(s) 183, 340
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 187, 196
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 496
Hpy8I GTNNAC 2 cut(s) 187, 196
HpyAV CCTTC 2 cut(s) 63, 500
HpyCH4III ACNGT 3 cut(s) 141, 245, 361
HpyCH4V TGCA 3 cut(s) 230, 284, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
LmnI GCTCC 2 cut(s) 238, 382
LpnPI CCDG 2 cut(s) 276, 406
Lsp1109I GCAGC 2 cut(s) 242, 452
LweI GCATC 2 cut(s) 354, 489
MaeI CTAG 3 cut(s) 38, 258, 381
MaeIII GTNAC 2 cut(s) 31, 274
MboII GAAGA 1 cut(s) 306
MfeI CAATTG 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 3 cut(s) 42, 106, 215
MlyI GAGTC 1 cut(s) 192
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 4 cut(s) 16, 415, 430, 445
MseI TTAA 2 cut(s) 168, 254
MunI CAATTG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 47
NmuCI GTSAC 2 cut(s) 31, 274
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 2 cut(s) 232, 442
PleI GAGTC 1 cut(s) 191
PpsI GAGTC 1 cut(s) 191
PsiI TTATAA 1 cut(s) 356
PspEI GGTNACC 1 cut(s) 274
PstI CTGCAG 1 cut(s) 442
RsaI GTAC 2 cut(s) 197, 305
RsaNI GTAC 2 cut(s) 196, 304
SaqAI TTAA 2 cut(s) 168, 254
SatI GCNGC 2 cut(s) 231, 441
SchI GAGTC 1 cut(s) 192
SduI GDGCHC 1 cut(s) 130
SetI ASST 5 cut(s) 97, 235, 351, 422, 437
SfaNI GCATC 2 cut(s) 354, 489
SfcI CTRYAG 2 cut(s) 66, 438
SmlI CTYRAG 1 cut(s) 406
SmoI CTYRAG 1 cut(s) 406
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 3 cut(s) 42, 106, 215
SsiI CCGC 2 cut(s) 288, 312
SspMI CTAG 3 cut(s) 38, 258, 381
TaaI ACNGT 3 cut(s) 141, 245, 361
TaqI TCGA 1 cut(s) 111
TasI AATT 3 cut(s) 42, 106, 215
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 2 cut(s) 168, 254
Tru9I TTAA 2 cut(s) 168, 254
TscAI CASTG 2 cut(s) 217, 250
TseFI GTSAC 2 cut(s) 31, 274
TseI GCWGC 2 cut(s) 230, 440
Tsp45I GTSAC 2 cut(s) 31, 274
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 2 cut(s) 217, 250
XapI RAATTY 1 cut(s) 215
XspI CTAG 3 cut(s) 38, 258, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.