FvH4_5g01010

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000318
Physical Location & Seq
Forward (+)
591234 .. 592382
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01010.t1

Sequence Viewer

Length: 645 bp
ATGGCCTCTTCCCAGCTCTCTATTATCTTTGCAGTTCTAGCCATTTTCGTCCCTTTGGTTTTGGCCAAGCAGTATACTGTTGGTGACAAGGATGGTTGGGCATACATGATTGACTATGATGCTTGGACCAAGGGAAAACAATTCGCTGTTGGTGACACTATTCTTTTCAAATATGCGGAAGGAGCCCACAATGTGGTTGAAGTGAAGGAGGACGAGTATGCACAATGTAAAGCTTCTCCTACCGCAAAGGAATTAACAAGTGGACAGGATGTGATCAAGCTTGATGCCCCAGGAAAGAGATATTTCATTTGCACTATTGGTAAACATTGTGTAAACAAGCAGAAGATTGCTATAACTGTGGGATCTTCTTCATCTTCCTCTGGTCCTGCCGCCGGCCCAACTGCTTCAAGCCCTGATGCCTCAAGCCCAGCCTCAAGCGTAACCGATTCCACAACAGATGCCTCAAGCCCAACAGAATCCGGCTCAAGTGACTCGAGCGCAACCAAATCCGGCCTAGGCGGCTTAGATGATTTAACCAAGCCCATCGCACCTGCCCCAGGCCCACATAACTCTGCAGCAACTATCGGAGGAAGATATGGGTGGATGGTCATTTTGAGCGGCATTATAGGGTTTCTCATCGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

215

Amino Acids

22.07

Weight (kDa)

5.56

Isoelectric Point (pI)

49.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 112 2.2e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 559
Acc36I ACCTGC 1 cut(s) 559
AccB7I CCANNNNNTGG 1 cut(s) 193
AccBSI CCGCTC 1 cut(s) 618
AccI GTMKAC 1 cut(s) 74
AciI CCGC 5 cut(s) 176, 243, 390, 519, 618
AclWI GGATC 1 cut(s) 370
AcoI YGGCCR 1 cut(s) 63
AdeI CACNNNGTG 1 cut(s) 193
AfiI CCNNNNNNNGG 3 cut(s) 193, 392, 557
AgsI TTSAA 3 cut(s) 169, 200, 408
AjnI CCWGG 2 cut(s) 289, 556
AluBI AGCT 3 cut(s) 16, 233, 280
AluI AGCT 3 cut(s) 16, 233, 280
AlwI GGATC 1 cut(s) 370
Ama87I CYCGRG 1 cut(s) 493
AoxI GGCC 5 cut(s) 3, 63, 394, 511, 559
ApeKI GCWGC 1 cut(s) 575
AspA2I CCTAGG 1 cut(s) 514
AspLEI GCGC 1 cut(s) 500
AspS9I GGNCC 4 cut(s) 126, 383, 395, 560
AsuHPI GGTGA 2 cut(s) 95, 164
AvaI CYCGRG 1 cut(s) 493
AvaII GGWCC 2 cut(s) 126, 383
AvrII CCTAGG 1 cut(s) 514
BalI TGGCCA 1 cut(s) 65
BanII GRGCYC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 587
BccI CCATC 3 cut(s) 86, 551, 598
BciT130I CCWGG 2 cut(s) 291, 558
BclI TGATCA 1 cut(s) 273
BfaI CTAG 2 cut(s) 38, 515
BfmI CTRYAG 1 cut(s) 573
BfuAI ACCTGC 1 cut(s) 559
BglI GCCNNNNNGGC 1 cut(s) 519
BisI GCNGC 4 cut(s) 390, 520, 576, 619
BlnI CCTAGG 1 cut(s) 514
BlsI GCNGC 4 cut(s) 391, 521, 577, 620
Bme1390I CCNGG 2 cut(s) 291, 558
Bme18I GGWCC 2 cut(s) 126, 383
BmeT110I CYCGRG 1 cut(s) 493
BmgT120I GGNCC 4 cut(s) 126, 383, 395, 560
BmiI GGNNCC 1 cut(s) 184
BmrFI CCNGG 2 cut(s) 291, 558
BmsI GCATC 4 cut(s) 109, 274, 406, 448
BpuEI CTTGAG 4 cut(s) 406, 418, 448, 469
BsaJI CCNNGG 4 cut(s) 129, 289, 514, 556
BsaXI ACNNNNNCTCC 2 cut(s) 200, 230
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 392, 557
Bse118I RCCGGY 1 cut(s) 392
BseBI CCWGG 2 cut(s) 291, 558
BseDI CCNNGG 4 cut(s) 129, 289, 514, 556
BseGI GGATG 3 cut(s) 97, 274, 609
BseLI CCNNNNNNNGG 3 cut(s) 193, 392, 557
BseXI GCAGC 1 cut(s) 587
BseYI CCCAGC 2 cut(s) 12, 427
BshFI GGCC 5 cut(s) 5, 65, 396, 513, 561
BsiHKCI CYCGRG 1 cut(s) 493
BsiSI CCGG 3 cut(s) 393, 480, 510
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 3 cut(s) 193, 392, 557
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 5 cut(s) 5, 65, 396, 513, 561
BsoBI CYCGRG 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 187
Bsp143I GATC 2 cut(s) 273, 362
BspACI CCGC 5 cut(s) 176, 243, 390, 519, 618
BspANI GGCC 5 cut(s) 5, 65, 396, 513, 561
BspLI GGNNCC 1 cut(s) 184
BspMAI CTGCAG 1 cut(s) 577
BspMI ACCTGC 1 cut(s) 559
BspPI GGATC 1 cut(s) 370
BsrBI CCGCTC 1 cut(s) 618
BsrFI RCCGGY 1 cut(s) 392
BssAI RCCGGY 1 cut(s) 392
BssECI CCNNGG 4 cut(s) 129, 289, 514, 556
BssMI GATC 2 cut(s) 273, 362
BssNAI GTATAC 1 cut(s) 75
BssT1I CCWWGG 2 cut(s) 129, 514
Bst1107I GTATAC 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 291, 558
Bst4CI ACNGT 2 cut(s) 79, 358
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 1 cut(s) 394
BstDEI CTNAG 1 cut(s) 523
BstENI CCTNNNNNAGG 1 cut(s) 555
BstF5I GGATG 3 cut(s) 97, 274, 609
BstHHI GCGC 1 cut(s) 500
BstKTI GATC 2 cut(s) 276, 365
BstMBI GATC 2 cut(s) 273, 362
BstMWI GCNNNNNNNGC 3 cut(s) 38, 182, 519
BstNI CCWGG 2 cut(s) 291, 558
BstSCI CCNGG 2 cut(s) 289, 556
BstSFI CTRYAG 1 cut(s) 573
BstV1I GCAGC 1 cut(s) 587
BstX2I RGATCY 1 cut(s) 362
BstYI RGATCY 1 cut(s) 362
BstZ17I GTATAC 1 cut(s) 75
BsuRI GGCC 5 cut(s) 5, 65, 396, 513, 561
BtgZI GCGATG 2 cut(s) 529, 622
BtsCI GGATG 3 cut(s) 97, 274, 609
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 1 cut(s) 394
CfoI GCGC 1 cut(s) 500
Cfr10I RCCGGY 1 cut(s) 392
Cfr13I GGNCC 4 cut(s) 126, 383, 395, 560
CviAII CATG 1 cut(s) 106
DdeI CTNAG 1 cut(s) 523
DpnI GATC 2 cut(s) 275, 364
DpnII GATC 2 cut(s) 273, 362
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco130I CCWWGG 2 cut(s) 129, 514
Eco24I GRGCYC 1 cut(s) 187
Eco47I GGWCC 2 cut(s) 126, 383
Eco88I CYCGRG 1 cut(s) 493
EcoNI CCTNNNNNAGG 1 cut(s) 555
EcoRII CCWGG 2 cut(s) 289, 556
EcoT14I CCWWGG 2 cut(s) 129, 514
EcoT38I GRGCYC 1 cut(s) 187
ErhI CCWWGG 2 cut(s) 129, 514
FaeI CATG 1 cut(s) 109
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 105
FbaI TGATCA 1 cut(s) 273
FblI GTMKAC 1 cut(s) 74
Fnu4HI GCNGC 4 cut(s) 390, 520, 576, 619
FokI GGATG 3 cut(s) 104, 281, 616
FriOI GRGCYC 1 cut(s) 187
Fsp4HI GCNGC 4 cut(s) 390, 520, 576, 619
FspBI CTAG 2 cut(s) 38, 515
GlaI GCGC 1 cut(s) 499
GluI GCNGC 4 cut(s) 390, 520, 576, 619
GsaI CCCAGC 2 cut(s) 16, 431
HaeIII GGCC 5 cut(s) 5, 65, 396, 513, 561
HapII CCGG 3 cut(s) 393, 480, 510
HhaI GCGC 1 cut(s) 500
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 498
HinP1I GCGC 1 cut(s) 498
HindIII AAGCTT 2 cut(s) 231, 278
HinfI GANTC 3 cut(s) 446, 476, 491
HpaII CCGG 3 cut(s) 393, 480, 510
HphI GGTGA 2 cut(s) 95, 164
Hpy166II GTNNAC 4 cut(s) 75, 263, 323, 334
Hpy188I TCNGA 1 cut(s) 587
Hpy8I GTNNAC 4 cut(s) 75, 263, 323, 334
HpyAV CCTTC 2 cut(s) 173, 199
HpyCH4III ACNGT 2 cut(s) 79, 358
HpyCH4V TGCA 4 cut(s) 32, 221, 312, 575
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 182, 519
HpyF3I CTNAG 1 cut(s) 523
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 498
KroI GCCGGC 1 cut(s) 392
KroNI GCCGGC 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 2 cut(s) 273, 362
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 4 cut(s) 109, 274, 406, 448
MaeI CTAG 2 cut(s) 38, 515
MaeIII GTNAC 4 cut(s) 83, 152, 439, 488
MalI GATC 2 cut(s) 275, 364
MbiI CCGCTC 1 cut(s) 618
MboI GATC 2 cut(s) 273, 362
MboII GAAGA 5 cut(s) 355, 357, 360, 366, 603
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 187
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 140, 251
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 485
MnlI CCTC 7 cut(s) 16, 202, 388, 430, 442, 472, 581
Mox20I TGGCCA 1 cut(s) 65
MroNI GCCGGC 1 cut(s) 392
MscI TGGCCA 1 cut(s) 65
MseI TTAA 3 cut(s) 254, 533, 643
Msp20I TGGCCA 1 cut(s) 65
MspI CCGG 3 cut(s) 393, 480, 510
MspR9I CCNGG 2 cut(s) 291, 558
MvaI CCWGG 2 cut(s) 291, 558
MwoI GCNNNNNNNGC 3 cut(s) 38, 182, 519
NaeI GCCGGC 1 cut(s) 394
NdeII GATC 2 cut(s) 273, 362
NgoMIV GCCGGC 1 cut(s) 392
NlaIII CATG 1 cut(s) 109
NlaIV GGNNCC 1 cut(s) 184
NmuCI GTSAC 3 cut(s) 83, 152, 488
PaeR7I CTCGAG 1 cut(s) 493
PaqCI CACCTGC 1 cut(s) 559
PdiI GCCGGC 1 cut(s) 394
PfeI GAWTC 2 cut(s) 446, 476
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 4 cut(s) 391, 521, 577, 620
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
Psp6I CCWGG 2 cut(s) 289, 556
PspFI CCCAGC 2 cut(s) 12, 427
PspGI CCWGG 2 cut(s) 289, 556
PspN4I GGNNCC 1 cut(s) 184
PspPI GGNCC 4 cut(s) 126, 383, 395, 560
PspXI VCTCGAGB 1 cut(s) 493
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 1 cut(s) 362
SaqAI TTAA 3 cut(s) 254, 533, 643
SatI GCNGC 4 cut(s) 390, 520, 576, 619
Sau3AI GATC 2 cut(s) 273, 362
Sau96I GGNCC 4 cut(s) 126, 383, 395, 560
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 2 cut(s) 291, 558
SduI GDGCHC 1 cut(s) 187
SetI ASST 4 cut(s) 18, 235, 282, 553
SfaNI GCATC 4 cut(s) 109, 274, 406, 448
SfcI CTRYAG 1 cut(s) 573
Sfr274I CTCGAG 1 cut(s) 493
SinI GGWCC 2 cut(s) 126, 383
SlaI CTCGAG 1 cut(s) 493
SmlI CTYRAG 5 cut(s) 421, 433, 463, 484, 493
SmoI CTYRAG 5 cut(s) 421, 433, 463, 484, 493
Sse9I AATT 2 cut(s) 140, 251
SsiI CCGC 5 cut(s) 176, 243, 390, 519, 618
SspMI CTAG 2 cut(s) 38, 515
StyD4I CCNGG 2 cut(s) 289, 556
StyI CCWWGG 2 cut(s) 129, 514
TaaI ACNGT 2 cut(s) 79, 358
TaqI TCGA 1 cut(s) 494
TasI AATT 2 cut(s) 140, 251
TauI GCSGC 3 cut(s) 392, 522, 621
TfiI GAWTC 2 cut(s) 446, 476
Tru1I TTAA 3 cut(s) 254, 533, 643
Tru9I TTAA 3 cut(s) 254, 533, 643
TseFI GTSAC 3 cut(s) 83, 152, 488
TseI GCWGC 1 cut(s) 575
Tsp45I GTSAC 3 cut(s) 83, 152, 488
TspDTI ATGAA 2 cut(s) 295, 360
Van91I CCANNNNNTGG 1 cut(s) 193
VpaK11BI GGWCC 2 cut(s) 126, 383
XagI CCTNNNNNAGG 1 cut(s) 555
XhoI CTCGAG 1 cut(s) 493
XmaJI CCTAGG 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 74
XspI CTAG 2 cut(s) 38, 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.