pycom04g06650

Plastocyanin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000318
Physical Location & Seq
Reverse (-)
6860450 .. 6861071
622 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g06650.2

Sequence Viewer

Length: 447 bp
ATGGCCTCTTCCCATCTATTTATCCTTGTCACTCTTGCAATTGTTGCCCCTTGTATTTTGGTCACAGATTTTGTTGTTGGCGACGACAAAGATTTTAAGTATCCAAAAGGAGTCCACAACGTGCACAAAGTGAATGGCACGGGCTTTCAGCAAAGTGCAGCTCCATTAGACAGTGTGCCATTGACTAGTGGAAACGACGTGGTCACCCTTGCAACCCCGGGAAGAAAATGGTACATTTGCGGTGTTGGTCAGCATTGTAAAGCGGGGAACCAGAAGTTTCTTATAACTGTGATGCCATCATCCACTCCTAGCCCAAGTCCCAGTTATACTGCCTCAAGCCCTAGCACCTCAATCCCTTACACCTCTGCCGCAACAGGAATTGCTGGAACAAGATATGGGTGGAGGATGACAGTTGTTTTTGGCTTTCTCGCACTGCTGACGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

149

Amino Acids

15.59

Weight (kDa)

9.1

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AciI CCGC 3 cut(s) 240, 263, 369
AdeI CACNNNGTG 2 cut(s) 121, 130
AfaI GTAC 1 cut(s) 233
AhlI ACTAGT 1 cut(s) 185
AjiI CACGTC 1 cut(s) 199
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw21I GWGCWC 1 cut(s) 126
Alw44I GTGCAC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 217
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 158
AsuC2I CCSGG 2 cut(s) 218, 219
AsuHPI GGTGA 1 cut(s) 196
AvaI CYCGRG 1 cut(s) 217
BaeGI GKGCMC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 126
BbvI GCAGC 1 cut(s) 170
BccI CCATC 2 cut(s) 21, 304
BciVI GTATCC 1 cut(s) 111
BcnI CCSGG 2 cut(s) 218, 219
BcuI ACTAGT 1 cut(s) 185
BfaI CTAG 3 cut(s) 186, 309, 342
BfuI GTATCC 1 cut(s) 111
BisI GCNGC 2 cut(s) 159, 369
BlsI GCNGC 2 cut(s) 160, 370
Bme1390I CCNGG 2 cut(s) 218, 219
BmeT110I CYCGRG 1 cut(s) 217
BmgBI CACGTC 1 cut(s) 199
BmiI GGNNCC 1 cut(s) 269
BmrFI CCNGG 2 cut(s) 218, 219
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 282
BmuI ACTGGG 1 cut(s) 315
BpuEI CTTGAG 1 cut(s) 319
BpuMI CCSGG 2 cut(s) 218, 219
BsaJI CCNNGG 2 cut(s) 216, 217
Bse1I ACTGG 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 216, 217
BseGI GGATG 2 cut(s) 299, 411
BseNI ACTGG 1 cut(s) 321
BseSI GKGCMC 1 cut(s) 126
BseXI GCAGC 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 177
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 217
BsiSI CCGG 1 cut(s) 218
BslFI GGGAC 1 cut(s) 303
BsmFI GGGAC 1 cut(s) 303
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 126
BspACI CCGC 3 cut(s) 240, 263, 369
BspANI GGCC 1 cut(s) 5
BspLI GGNNCC 1 cut(s) 269
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 216, 217
Bst4CI ACNGT 3 cut(s) 173, 289, 412
Bst6I CTCTTC 1 cut(s) 13
BstAPI GCANNNNNTGC 1 cut(s) 44
BstEII GGTNACC 1 cut(s) 202
BstF5I GGATG 2 cut(s) 299, 411
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstPI GGTNACC 1 cut(s) 202
BstSCI CCNGG 2 cut(s) 216, 217
BstSLI GKGCMC 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 170
BsuI GTATCC 1 cut(s) 111
BsuRI GGCC 1 cut(s) 5
BtrI CACGTC 1 cut(s) 199
BtsCI GGATG 2 cut(s) 299, 411
BtsI GCAGTG 1 cut(s) 431
BtsIMutI CAGTG 2 cut(s) 178, 431
Cfr9I CCCGGG 1 cut(s) 217
Csp6I GTAC 1 cut(s) 232
CviJI RGCY 7 cut(s) 5, 144, 161, 312, 339, 423, 443
CviKI_1 RGCY 7 cut(s) 5, 144, 161, 312, 339, 423, 443
CviQI GTAC 1 cut(s) 232
DraIII CACNNNGTG 2 cut(s) 121, 130
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 217
Eco91I GGTNACC 1 cut(s) 202
EcoO65I GGTNACC 1 cut(s) 202
FaiI YATR 3 cut(s) 284, 327, 396
FaqI GGGAC 1 cut(s) 303
FauI CCCGC 1 cut(s) 256
Fnu4HI GCNGC 2 cut(s) 159, 369
FokI GGATG 2 cut(s) 286, 418
Fsp4HI GCNGC 2 cut(s) 159, 369
FspBI CTAG 3 cut(s) 186, 309, 342
GluI GCNGC 2 cut(s) 159, 369
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 218
HinfI GANTC 1 cut(s) 111
HpaII CCGG 1 cut(s) 218
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 115, 124
Hpy8I GTNNAC 2 cut(s) 115, 124
Hpy99I CGWCG 2 cut(s) 86, 200
HpyCH4III ACNGT 3 cut(s) 173, 289, 412
HpyCH4IV ACGT 2 cut(s) 120, 198
HpyCH4V TGCA 4 cut(s) 38, 124, 158, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
HpySE526I ACGT 2 cut(s) 120, 198
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 5 cut(s) 231, 284, 334, 360, 369
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 1 cut(s) 282
MaeI CTAG 3 cut(s) 186, 309, 342
MaeII ACGT 2 cut(s) 120, 198
MaeIII GTNAC 3 cut(s) 28, 61, 202
MboII GAAGA 1 cut(s) 234
MfeI CAATTG 1 cut(s) 39
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 2 cut(s) 39, 378
MlyI GAGTC 1 cut(s) 120
MnlI CCTC 5 cut(s) 16, 343, 358, 373, 396
MseI TTAA 2 cut(s) 96, 445
MspI CCGG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 218, 219
MunI CAATTG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 44
NciI CCSGG 2 cut(s) 218, 219
NlaIV GGNNCC 1 cut(s) 269
NmuCI GTSAC 3 cut(s) 28, 61, 202
PflFI GACNNNGTC 1 cut(s) 200
PkrI GCNGC 2 cut(s) 160, 370
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PsiI TTATAA 1 cut(s) 284
PspEI GGTNACC 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 200
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SaqAI TTAA 2 cut(s) 96, 445
SatI GCNGC 2 cut(s) 159, 369
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 2 cut(s) 218, 219
SduI GDGCHC 1 cut(s) 126
SetI ASST 5 cut(s) 123, 163, 201, 350, 365
SfaNI GCATC 1 cut(s) 282
SmaI CCCGGG 1 cut(s) 219
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SpeI ACTAGT 1 cut(s) 185
Sse9I AATT 2 cut(s) 39, 378
SsiI CCGC 3 cut(s) 240, 263, 369
SspMI CTAG 3 cut(s) 186, 309, 342
StyD4I CCNGG 2 cut(s) 216, 217
TaaI ACNGT 3 cut(s) 173, 289, 412
TaiI ACGT 2 cut(s) 123, 201
TasI AATT 2 cut(s) 39, 378
TauI GCSGC 1 cut(s) 371
Tru1I TTAA 2 cut(s) 96, 445
Tru9I TTAA 2 cut(s) 96, 445
TscAI CASTG 2 cut(s) 178, 438
TseFI GTSAC 3 cut(s) 28, 61, 202
TseI GCWGC 1 cut(s) 158
Tsp45I GTSAC 3 cut(s) 28, 61, 202
TspMI CCCGGG 1 cut(s) 217
TspRI CASTG 2 cut(s) 178, 438
Tth111I GACNNNGTC 1 cut(s) 200
VneI GTGCAC 1 cut(s) 122
XmaI CCCGGG 1 cut(s) 217
XspI CTAG 3 cut(s) 186, 309, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.