Rh7CG195300

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000318
Physical Location & Seq
Reverse (-)
17168257 .. 17168958
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG195300.1

Sequence Viewer

Length: 609 bp
ATGTTATTTTATCATCAAGCAAACAAATTAAACTCAATGGCCTCTTCCCAGCTCTTTATTATCTTTTCCATTCTAGCAATTTTCGTCCCTTTGATTGTGGCCAAAGATTATGTGGTTGGTGACAAAGCAGGTTGGACAATTGAAGTTGATTATGAAGCTTGGGCAAAGGGAAAAAAATTTTCTGTTGGTGACAGACTCCTTTTTTTATATCCAAAAGGATCCCACAGTGTGGTTGAAGTGGAGGAGAAAGACTTTAATAGATGTAAAGCTCCTGCTGACGGTAAGGAATTAACGAGTGGAGAGGATGTGATCAAGCTTGATGCCCCAGGAAAGAAATATTTCATTTGCAATGTTGGTAGACATTGTCAAATGGGGAACCAGAAGGTTGCTATAAATGTGGAATCATCTTCATCTTCATCTTCCTCTACTCCTAGCCCAAGCCCAAGTGAATCCAGCCCAAGTGCCTCAAGCCCAGAGCCCTCAAGCCCACCTTCTTCCCCCAGCCCAGCAGCCCCAAGCCCTAGTACCTCTGGAGCAACGATCGGAGAAAGATACGGGTGGATGTTAATTATGGTCGGTATTATAGGGTCTCTCATTGGGAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

202

Amino Acids

21.45

Weight (kDa)

6.3

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 45 - 125 1.7e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 119
AccB7I CCANNNNNTGG 1 cut(s) 229
AccI GTMKAC 1 cut(s) 358
AclWI GGATC 2 cut(s) 213, 226
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 1 cut(s) 176
AdeI CACNNNGTG 1 cut(s) 229
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 2 cut(s) 229, 278
AgsI TTSAA 2 cut(s) 143, 236
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 4 cut(s) 52, 158, 269, 316
AluI AGCT 4 cut(s) 52, 158, 269, 316
Alw26I GTCTC 1 cut(s) 594
AlwI GGATC 2 cut(s) 213, 226
AoxI GGCC 2 cut(s) 39, 99
ApeKI GCWGC 1 cut(s) 509
ApoI RAATTY 1 cut(s) 176
Asp700I GAANNNNTTC 1 cut(s) 338
AsuHPI GGTGA 2 cut(s) 131, 200
BalI TGGCCA 1 cut(s) 101
BamHI GGATCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 480
BbvI GCAGC 1 cut(s) 521
BciT130I CCWGG 1 cut(s) 327
BclI TGATCA 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 594
BfaI CTAG 3 cut(s) 74, 432, 522
BfuAI ACCTGC 1 cut(s) 119
BisI GCNGC 1 cut(s) 510
BlsI GCNGC 1 cut(s) 511
Bme1390I CCNGG 1 cut(s) 327
BmiI GGNNCC 2 cut(s) 220, 377
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 1 cut(s) 310
BpmI CTGGAG 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 451, 466
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 1 cut(s) 325
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 2 cut(s) 229, 278
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 325
BseGI GGATG 2 cut(s) 310, 567
BseLI CCNNNNNNNGG 2 cut(s) 229, 278
BseMI GCAATG 1 cut(s) 355
BseRI GAGGAG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 521
BseYI CCCAGC 3 cut(s) 48, 500, 505
Bsh1285I CGRYCG 1 cut(s) 543
BshFI GGCC 2 cut(s) 41, 101
BsiEI CGRYCG 1 cut(s) 543
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 2 cut(s) 229, 278
BsmAI GTCTC 1 cut(s) 594
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 2 cut(s) 41, 101
Bso31I GGTCTC 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 480
Bsp143I GATC 3 cut(s) 218, 309, 540
BspANI GGCC 2 cut(s) 41, 101
BspLI GGNNCC 2 cut(s) 220, 377
BspMI ACCTGC 1 cut(s) 119
BspPI GGATC 2 cut(s) 213, 226
BspTNI GGTCTC 1 cut(s) 594
BsrDI GCAATG 1 cut(s) 355
BssECI CCNNGG 1 cut(s) 325
BssMI GATC 3 cut(s) 218, 309, 540
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 2 cut(s) 227, 281
Bst6I CTCTTC 1 cut(s) 49
BstF5I GGATG 2 cut(s) 310, 567
BstKTI GATC 3 cut(s) 221, 312, 543
BstMAI GTCTC 1 cut(s) 594
BstMBI GATC 3 cut(s) 218, 309, 540
BstMCI CGRYCG 1 cut(s) 543
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstV1I GCAGC 1 cut(s) 521
BstX2I RGATCY 1 cut(s) 218
BstYI RGATCY 1 cut(s) 218
BsuRI GGCC 2 cut(s) 41, 101
BtsCI GGATG 2 cut(s) 310, 567
BtsIMutI CAGTG 1 cut(s) 232
BveI ACCTGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 525
CviQI GTAC 1 cut(s) 525
DpnI GATC 3 cut(s) 220, 311, 542
DpnII GATC 3 cut(s) 218, 309, 540
DraIII CACNNNGTG 1 cut(s) 229
EaeI YGGCCR 1 cut(s) 99
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 594
EcoRII CCWGG 1 cut(s) 325
EcoT38I GRGCYC 1 cut(s) 480
FaiI YATR 6 cut(s) 111, 153, 208, 392, 572, 584
FalI AAGNNNNNCTT 2 cut(s) 475, 507
FaqI GGGAC 1 cut(s) 71
FbaI TGATCA 1 cut(s) 309
FblI GTMKAC 1 cut(s) 358
Fnu4HI GCNGC 1 cut(s) 510
FokI GGATG 2 cut(s) 317, 574
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 1 cut(s) 510
FspBI CTAG 3 cut(s) 74, 432, 522
GluI GCNGC 1 cut(s) 510
GsaI CCCAGC 3 cut(s) 52, 504, 509
GsuI CTGGAG 1 cut(s) 552
HaeIII GGCC 2 cut(s) 41, 101
HindIII AAGCTT 2 cut(s) 156, 314
HinfI GANTC 3 cut(s) 195, 401, 449
HphI GGTGA 2 cut(s) 131, 200
Hpy166II GTNNAC 1 cut(s) 359
Hpy188I TCNGA 1 cut(s) 545
Hpy188III TCNNGA 1 cut(s) 531
Hpy8I GTNNAC 1 cut(s) 359
HpyAV CCTTC 2 cut(s) 376, 501
HpyCH4III ACNGT 2 cut(s) 227, 281
HpyCH4V TGCA 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 3 cut(s) 218, 309, 540
LmnI GCTCC 2 cut(s) 274, 533
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 1 cut(s) 310
MaeI CTAG 3 cut(s) 74, 432, 522
MaeIII GTNAC 2 cut(s) 119, 188
MalI GATC 3 cut(s) 220, 311, 542
MboI GATC 3 cut(s) 218, 309, 540
MboII GAAGA 5 cut(s) 36, 399, 405, 411, 486
MfeI CAATTG 1 cut(s) 138
MflI RGATCY 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 480
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 6 cut(s) 26, 78, 138, 176, 287, 567
MluNI TGGCCA 1 cut(s) 101
MlyI GAGTC 1 cut(s) 189
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 7 cut(s) 52, 235, 295, 433, 475, 490, 538
Mox20I TGGCCA 1 cut(s) 101
MroXI GAANNNNTTC 1 cut(s) 338
MscI TGGCCA 1 cut(s) 101
MseI TTAA 4 cut(s) 29, 255, 290, 566
Msp20I TGGCCA 1 cut(s) 101
MspR9I CCNGG 1 cut(s) 327
MunI CAATTG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 327
NdeII GATC 3 cut(s) 218, 309, 540
NlaIV GGNNCC 2 cut(s) 220, 377
NmuCI GTSAC 2 cut(s) 119, 188
PdmI GAANNNNTTC 1 cut(s) 338
PfeI GAWTC 2 cut(s) 401, 449
PflFI GACNNNGTC 1 cut(s) 363
PflMI CCANNNNNTGG 1 cut(s) 229
PkrI GCNGC 1 cut(s) 511
Ple19I CGATCG 1 cut(s) 543
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
Psp6I CCWGG 1 cut(s) 325
PspFI CCCAGC 3 cut(s) 48, 500, 505
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 220, 377
PsuI RGATCY 1 cut(s) 218
PsyI GACNNNGTC 1 cut(s) 363
PvuI CGATCG 1 cut(s) 543
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
SaqAI TTAA 4 cut(s) 29, 255, 290, 566
SatI GCNGC 1 cut(s) 510
Sau3AI GATC 3 cut(s) 218, 309, 540
SchI GAGTC 1 cut(s) 189
ScrFI CCNGG 1 cut(s) 327
SduI GDGCHC 1 cut(s) 480
SetI ASST 8 cut(s) 54, 133, 160, 271, 318, 387, 493, 530
SfaNI GCATC 1 cut(s) 310
SmlI CTYRAG 2 cut(s) 466, 481
SmoI CTYRAG 2 cut(s) 466, 481
Sse9I AATT 6 cut(s) 26, 78, 138, 176, 287, 567
SspI AATATT 1 cut(s) 338
SspMI CTAG 3 cut(s) 74, 432, 522
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 2 cut(s) 227, 281
TasI AATT 6 cut(s) 26, 78, 138, 176, 287, 567
TfiI GAWTC 2 cut(s) 401, 449
Tru1I TTAA 4 cut(s) 29, 255, 290, 566
Tru9I TTAA 4 cut(s) 29, 255, 290, 566
TscAI CASTG 1 cut(s) 232
TseFI GTSAC 2 cut(s) 119, 188
TseI GCWGC 1 cut(s) 509
Tsp45I GTSAC 2 cut(s) 119, 188
TspDTI ATGAA 4 cut(s) 168, 331, 399, 405
TspRI CASTG 1 cut(s) 232
Tth111I GACNNNGTC 1 cut(s) 363
Van91I CCANNNNNTGG 1 cut(s) 229
XapI RAATTY 1 cut(s) 176
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 358
XmnI GAANNNNTTC 1 cut(s) 338
XspI CTAG 3 cut(s) 74, 432, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.