RLG00000003732

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000318
Physical Location & Seq
Forward (+)
52165267 .. 52165953
687 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003732

Sequence Viewer

Length: 594 bp
ATGGCCTCTTCCCAGCTCTTTATTATCTTTTCCATTCTAGCAATTTTCGTCCCTTTGATTTTGGCCAAAGATTATGTGGTTGGTGACAAAGCAGGTTGGACAATTGAAGTTGATTATGAAGCTTGGGCAAAGGGAAAAAATTTTTCTGTTGGTGACAGACTCCTTTTTTTATATCCAAAAGGATCCCACAGTGTGGTTGAAGTGGAGGAGAAAGACTTTAATAGATGTAAAGCTCCTACTGACGGTAAGGAATTAACGAGTGGAGAGGATGCGATCAAGCTTGATGCCCCAGGAAAGAAATATTTCATTTGCAATGTTGGTAGACATTGTCAAATGGGGAACCAGAAGGTTGCTATAAATGTGGAATCATCATCATCTTCATCTTCATCTTCCTCTACTCCTAGCCCAAGCCCAAGTGAATCCAGCCCAAGTGCCTCAAGCCCAGAGACCTCAAGCCCAAGTAATTCAAGCCCACCTGCTTCCTCCAGCCCAGCAGCCCCAAGCCCTAGTACCTCTGGAGCAACGATCGGAGAAAGATACGGGTGGATGTTAATTATGGTCGGTATTATAGGATTTCTCATTGGGAGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

198

Amino Acids

20.75

Weight (kDa)

5.23

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 1.1e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 484
Acc36I ACCTGC 2 cut(s) 83, 484
AccB7I CCANNNNNTGG 1 cut(s) 193
AccI GTMKAC 1 cut(s) 322
AclWI GGATC 2 cut(s) 177, 190
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 139
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 1 cut(s) 511
AfiI CCNNNNNNNGG 2 cut(s) 193, 242
AgsI TTSAA 3 cut(s) 107, 200, 468
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 4 cut(s) 16, 122, 233, 280
AluI AGCT 4 cut(s) 16, 122, 233, 280
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 2 cut(s) 177, 190
AoxI GGCC 2 cut(s) 3, 63
ApeKI GCWGC 1 cut(s) 494
ApoI RAATTY 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 95, 164
BalI TGGCCA 1 cut(s) 65
BamHI GGATCC 1 cut(s) 182
BbvI GCAGC 1 cut(s) 506
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 3 cut(s) 38, 402, 507
BfuAI ACCTGC 2 cut(s) 83, 484
BisI GCNGC 1 cut(s) 495
BlsI GCNGC 1 cut(s) 496
Bme1390I CCNGG 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 184, 341
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 2 cut(s) 259, 274
BpmI CTGGAG 2 cut(s) 469, 537
BpuEI CTTGAG 2 cut(s) 421, 436
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 242
Bse3DI GCAATG 1 cut(s) 319
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 274, 552
BseLI CCNNNNNNNGG 2 cut(s) 193, 242
BseMI GCAATG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 506
BseYI CCCAGC 2 cut(s) 12, 490
Bsh1285I CGRYCG 1 cut(s) 528
BshFI GGCC 2 cut(s) 5, 65
BsiEI CGRYCG 1 cut(s) 528
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 193, 242
BsmAI GTCTC 1 cut(s) 440
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 2 cut(s) 5, 65
Bso31I GGTCTC 1 cut(s) 440
Bsp143I GATC 3 cut(s) 182, 273, 525
BspANI GGCC 2 cut(s) 5, 65
BspLI GGNNCC 2 cut(s) 184, 341
BspMI ACCTGC 2 cut(s) 83, 484
BspPI GGATC 2 cut(s) 177, 190
BspTNI GGTCTC 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 319
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 3 cut(s) 182, 273, 525
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 2 cut(s) 191, 245
Bst6I CTCTTC 1 cut(s) 13
BstF5I GGATG 2 cut(s) 274, 552
BstKTI GATC 3 cut(s) 185, 276, 528
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 3 cut(s) 182, 273, 525
BstMCI CGRYCG 1 cut(s) 528
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 506
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 2 cut(s) 5, 65
BtsCI GGATG 2 cut(s) 274, 552
BtsIMutI CAGTG 1 cut(s) 196
BveI ACCTGC 2 cut(s) 83, 484
Csp6I GTAC 1 cut(s) 510
CviQI GTAC 1 cut(s) 510
DpnI GATC 3 cut(s) 184, 275, 527
DpnII GATC 3 cut(s) 182, 273, 525
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco31I GGTCTC 1 cut(s) 440
EcoRII CCWGG 1 cut(s) 289
FaiI YATR 6 cut(s) 75, 117, 172, 356, 557, 569
FaqI GGGAC 1 cut(s) 35
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 495
FokI GGATG 2 cut(s) 281, 559
Fsp4HI GCNGC 1 cut(s) 495
FspBI CTAG 3 cut(s) 38, 402, 507
GluI GCNGC 1 cut(s) 495
GsaI CCCAGC 2 cut(s) 16, 494
GsuI CTGGAG 2 cut(s) 469, 537
HaeIII GGCC 2 cut(s) 5, 65
HindIII AAGCTT 2 cut(s) 120, 278
HinfI GANTC 3 cut(s) 159, 365, 419
HphI GGTGA 2 cut(s) 95, 164
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 530
Hpy188III TCNNGA 1 cut(s) 516
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 2 cut(s) 191, 245
HpyCH4V TGCA 1 cut(s) 312
Kzo9I GATC 3 cut(s) 182, 273, 525
LmnI GCTCC 2 cut(s) 238, 518
Lsp1109I GCAGC 1 cut(s) 506
LweI GCATC 2 cut(s) 259, 274
MaeI CTAG 3 cut(s) 38, 402, 507
MaeIII GTNAC 2 cut(s) 83, 152
MalI GATC 3 cut(s) 184, 275, 527
MboI GATC 3 cut(s) 182, 273, 525
MboII GAAGA 3 cut(s) 369, 375, 381
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 1 cut(s) 182
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 6 cut(s) 42, 102, 139, 251, 463, 552
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 8 cut(s) 16, 199, 259, 403, 445, 460, 493, 523
Mox20I TGGCCA 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 302
MscI TGGCCA 1 cut(s) 65
MseI TTAA 3 cut(s) 219, 254, 551
Msp20I TGGCCA 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 291
MunI CAATTG 1 cut(s) 102
MvaI CCWGG 1 cut(s) 291
NdeII GATC 3 cut(s) 182, 273, 525
NlaIV GGNNCC 2 cut(s) 184, 341
NmuCI GTSAC 2 cut(s) 83, 152
PaqCI CACCTGC 1 cut(s) 484
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 365, 419
PflFI GACNNNGTC 1 cut(s) 327
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 1 cut(s) 496
Ple19I CGATCG 1 cut(s) 528
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 2 cut(s) 12, 490
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 184, 341
PsuI RGATCY 1 cut(s) 182
PsyI GACNNNGTC 1 cut(s) 327
PvuI CGATCG 1 cut(s) 528
RsaI GTAC 1 cut(s) 511
RsaNI GTAC 1 cut(s) 510
SaqAI TTAA 3 cut(s) 219, 254, 551
SatI GCNGC 1 cut(s) 495
Sau3AI GATC 3 cut(s) 182, 273, 525
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 291
SetI ASST 9 cut(s) 18, 97, 124, 235, 282, 351, 452, 478, 515
SfaNI GCATC 2 cut(s) 259, 274
SmlI CTYRAG 2 cut(s) 436, 451
SmoI CTYRAG 2 cut(s) 436, 451
Sse9I AATT 6 cut(s) 42, 102, 139, 251, 463, 552
SspI AATATT 1 cut(s) 302
SspMI CTAG 3 cut(s) 38, 402, 507
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 2 cut(s) 191, 245
TasI AATT 6 cut(s) 42, 102, 139, 251, 463, 552
TfiI GAWTC 2 cut(s) 365, 419
Tru1I TTAA 3 cut(s) 219, 254, 551
Tru9I TTAA 3 cut(s) 219, 254, 551
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 2 cut(s) 83, 152
TseI GCWGC 1 cut(s) 494
Tsp45I GTSAC 2 cut(s) 83, 152
TspDTI ATGAA 4 cut(s) 132, 295, 369, 375
TspRI CASTG 1 cut(s) 196
Tth111I GACNNNGTC 1 cut(s) 327
Van91I CCANNNNNTGG 1 cut(s) 193
XapI RAATTY 1 cut(s) 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 3 cut(s) 38, 402, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.