Rroxscaffold_2G00094310

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000318
Physical Location & Seq
Forward (+)
15619991 .. 15620598
608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00094310.1

Sequence Viewer

Length: 432 bp
ATGGCCTCTTCCCAGCTCTTCTTTGTCCTTGCCATTCTAGCAATTGTTGCCCCTTCAATTTTGGCCACAGATTTTATCGTTGGCGATGACAAAGTTTTTAACTACCCAGAAGGAGTTCACAATGTTCTCAAAGTGAATGGAACTGGGTTCCAAGAATGTGCAGTTCCTGCAGACACTGTGGCATTAACAAGTCAAAAGGATGTGATAAACCTAGCAACCACAGGAAGAAAATGGTACATTTGTGGTGTTTCTAAGCACTGTCAAGTTGGACCCCAGAAGCTGTTCATAACTGTGATGCTAGCTTCCTTTGCTCCTAGCCCAAGCCCCACTACCTCTACAGCAACTTCCAGTTCTGTTAATGGAGCAAGATTAGGGTGGATGATCGTTGTTTTTGGCATTCTTGGGATATTCATCTTGGATTGGACTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

143

Amino Acids

15.28

Weight (kDa)

7.73

Isoelectric Point (pI)

34.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 23 - 90 2.7e-15 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 63
AfaI GTAC 1 cut(s) 236
AgsI TTSAA 1 cut(s) 57
AluBI AGCT 3 cut(s) 16, 280, 302
AluI AGCT 3 cut(s) 16, 280, 302
AlwNI CAGNNNCTG 3 cut(s) 167, 176, 280
AoxI GGCC 2 cut(s) 3, 63
Asp700I GAANNNNTTC 2 cut(s) 114, 281
AspS9I GGNCC 1 cut(s) 269
AsuNHI GCTAGC 1 cut(s) 298
AvaII GGWCC 1 cut(s) 269
BaeI ACNNNNGTAYC 2 cut(s) 226, 259
BalI TGGCCA 1 cut(s) 65
BfaI CTAG 5 cut(s) 38, 212, 299, 315, 426
BfmI CTRYAG 2 cut(s) 168, 336
Bme18I GGWCC 1 cut(s) 269
BmgT120I GGNCC 1 cut(s) 269
BmiI GGNNCC 2 cut(s) 149, 271
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 285
BmtI GCTAGC 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 410
Bse1I ACTGG 2 cut(s) 148, 348
Bse8I GATNNNNATC 1 cut(s) 410
BseGI GGATG 2 cut(s) 205, 384
BseJI GATNNNNATC 1 cut(s) 410
BseNI ACTGG 2 cut(s) 148, 348
BseYI CCCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 180
BshFI GGCC 2 cut(s) 5, 65
BsmI GAATGC 1 cut(s) 396
BsnI GGCC 2 cut(s) 5, 65
Bsp143I GATC 1 cut(s) 381
BspANI GGCC 2 cut(s) 5, 65
BspLI GGNNCC 2 cut(s) 149, 271
BspMAI CTGCAG 1 cut(s) 172
BspOI GCTAGC 1 cut(s) 302
BspQI GCTCTTC 1 cut(s) 23
BsrI ACTGG 2 cut(s) 148, 348
BssMI GATC 1 cut(s) 381
Bst4CI ACNGT 3 cut(s) 178, 260, 292
Bst6I CTCTTC 2 cut(s) 13, 23
BstAPI GCANNNNNTGC 2 cut(s) 47, 167
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 205, 384
BstKTI GATC 1 cut(s) 384
BstMBI GATC 1 cut(s) 381
BstMWI GCNNNNNNNGC 4 cut(s) 38, 47, 167, 308
BstSFI CTRYAG 2 cut(s) 168, 336
BsuRI GGCC 2 cut(s) 5, 65
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 205, 384
BtsIMutI CAGTG 2 cut(s) 174, 256
Cac8I GCNNGC 1 cut(s) 300
CaiI CAGNNNCTG 3 cut(s) 167, 176, 280
Cfr13I GGNCC 1 cut(s) 269
Csp6I GTAC 1 cut(s) 235
CviJI RGCY 7 cut(s) 5, 16, 65, 280, 302, 318, 324
CviKI_1 RGCY 7 cut(s) 5, 16, 65, 280, 302, 318, 324
CviQI GTAC 1 cut(s) 235
DdeI CTNAG 1 cut(s) 252
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 2 cut(s) 13, 23
EarI CTCTTC 2 cut(s) 13, 23
Eco47I GGWCC 1 cut(s) 269
FaiI YATR 1 cut(s) 287
FokI GGATG 2 cut(s) 212, 391
FspBI CTAG 5 cut(s) 38, 212, 299, 315, 426
GsaI CCCAGC 1 cut(s) 16
HaeIII GGCC 2 cut(s) 5, 65
Hpy166II GTNNAC 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 118
HpyAV CCTTC 2 cut(s) 63, 104
HpyCH4III ACNGT 3 cut(s) 178, 260, 292
HpyCH4V TGCA 2 cut(s) 161, 170
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 47, 167, 308
HpyF3I CTNAG 1 cut(s) 252
Kzo9I GATC 1 cut(s) 381
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 316, 362
LpnPI CCDG 7 cut(s) 26, 120, 129, 180, 207, 287, 361
LweI GCATC 1 cut(s) 285
MaeI CTAG 5 cut(s) 38, 212, 299, 315, 426
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 2 cut(s) 10, 237
MfeI CAATTG 1 cut(s) 42
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 42, 57
MluNI TGGCCA 1 cut(s) 65
MmeI TCCRAC 1 cut(s) 247
MnlI CCTC 2 cut(s) 16, 343
Mox20I TGGCCA 1 cut(s) 65
MroXI GAANNNNTTC 2 cut(s) 114, 281
MscI TGGCCA 1 cut(s) 65
MseI TTAA 3 cut(s) 99, 185, 357
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 65
MunI CAATTG 1 cut(s) 42
Mva1269I GAATGC 1 cut(s) 396
MwoI GCNNNNNNNGC 4 cut(s) 38, 47, 167, 308
NdeII GATC 1 cut(s) 381
NheI GCTAGC 1 cut(s) 298
NlaIV GGNNCC 2 cut(s) 149, 271
PciSI GCTCTTC 1 cut(s) 23
PctI GAATGC 1 cut(s) 396
PdmI GAANNNNTTC 2 cut(s) 114, 281
PspFI CCCAGC 1 cut(s) 12
PspN4I GGNNCC 2 cut(s) 149, 271
PspPI GGNCC 1 cut(s) 269
PstI CTGCAG 1 cut(s) 172
PstNI CAGNNNCTG 3 cut(s) 167, 176, 280
RsaI GTAC 1 cut(s) 236
RsaNI GTAC 1 cut(s) 235
RseI CAYNNNNRTG 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 3 cut(s) 99, 185, 357
Sau3AI GATC 1 cut(s) 381
Sau96I GGNCC 1 cut(s) 269
SetI ASST 5 cut(s) 18, 213, 282, 304, 335
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 2 cut(s) 168, 336
SinI GGWCC 1 cut(s) 269
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 2 cut(s) 42, 57
SspMI CTAG 5 cut(s) 38, 212, 299, 315, 426
TaaI ACNGT 3 cut(s) 178, 260, 292
TasI AATT 2 cut(s) 42, 57
Tru1I TTAA 3 cut(s) 99, 185, 357
Tru9I TTAA 3 cut(s) 99, 185, 357
TscAI CASTG 2 cut(s) 181, 263
TspDTI ATGAA 2 cut(s) 274, 400
TspRI CASTG 2 cut(s) 181, 263
VpaK11BI GGWCC 1 cut(s) 269
XmnI GAANNNNTTC 2 cut(s) 114, 281
XspI CTAG 5 cut(s) 38, 212, 299, 315, 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.