RLG00000005919

electron transfer activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000318
Physical Location & Seq
Forward (+)
2807549 .. 2808110
562 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005919

Sequence Viewer

Length: 459 bp
ATGGCTTCGAACAAACTAGTGACCTTAATCGCCGCTGTTCTGATTCTTCTCCCTGCGATCGCCATGGCAAAAGATATTGTCGTCGGAGACGATAGCGGGTGGAAGCTGAATTTCGATTACCAAGCTTGGGCCAAGGACAAAGTATTCAAGTTGGTTGATCATTTTACAGTGTTCAAGTACAAACCTCCTACTCACAATGTGTACAAGGTGGACGGAGCTGGGTTCAAGGATTGCACTAAATCGGCAGCAAACGAAGCATTGACTAGTGGAAATGACAAAGTAGAACTGGAAACCGCCGGAAAGAAATGGTACATTTGTGGCGTTTCCGATCACTGTGATCAGGGGATGAAGCTTACCCTTAACGTTACGGAGAAGTCTTCTGCGGCTCGTGGGATCATCTTCCCCCGAAGCCAAGTCTTCGGGGTCGCCATCTTTGCCATCGTAGCAATTGTGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

153

Amino Acids

16.57

Weight (kDa)

8.72

Isoelectric Point (pI)

13.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 116 2.5e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 33, 96, 294, 383
AclI AACGTT 1 cut(s) 363
AclWI GGATC 1 cut(s) 401
AcsI RAATTY 1 cut(s) 109
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 3 cut(s) 179, 203, 311
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 3 cut(s) 148, 175, 226
AhlI ACTAGT 2 cut(s) 16, 263
AluBI AGCT 4 cut(s) 106, 125, 218, 352
AluI AGCT 4 cut(s) 106, 125, 218, 352
Alw26I GTCTC 1 cut(s) 81
AlwI GGATC 1 cut(s) 401
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 1 cut(s) 109
AsiSI GCGATCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 129
AsuII TTCGAA 1 cut(s) 8
BaeI ACNNNNGTAYC 2 cut(s) 301, 334
BauI CACGAG 1 cut(s) 387
BbsI GAAGAC 2 cut(s) 369, 409
BbvI GCAGC 1 cut(s) 257
BccI CCATC 2 cut(s) 437, 446
BclI TGATCA 2 cut(s) 157, 337
BcoDI GTCTC 1 cut(s) 81
BcuI ACTAGT 2 cut(s) 16, 263
BfaI CTAG 2 cut(s) 17, 264
BisI GCNGC 3 cut(s) 33, 246, 384
BlsI GCNGC 3 cut(s) 34, 247, 385
BmgT120I GGNCC 1 cut(s) 129
BpiI GAAGAC 2 cut(s) 369, 409
Bpu14I TTCGAA 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 63, 132
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 63, 132
BseGI GGATG 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 127
BseNI ACTGG 1 cut(s) 291
BseXI GCAGC 1 cut(s) 257
BseYI CCCAGC 1 cut(s) 218
Bsh1285I CGRYCG 1 cut(s) 60
BshFI GGCC 1 cut(s) 131
BsiEI CGRYCG 1 cut(s) 60
BsiSI CCGG 1 cut(s) 297
BslI CCNNNNNNNGG 1 cut(s) 127
BsmAI GTCTC 1 cut(s) 81
BsmBI CGTCTC 1 cut(s) 81
BsnI GGCC 1 cut(s) 131
Bsp119I TTCGAA 1 cut(s) 8
Bsp1407I TGTACA 1 cut(s) 201
Bsp143I GATC 5 cut(s) 57, 157, 328, 337, 393
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 4 cut(s) 33, 96, 294, 383
BspANI GGCC 1 cut(s) 131
BspPI GGATC 1 cut(s) 401
BspT104I TTCGAA 1 cut(s) 8
BsrGI TGTACA 1 cut(s) 201
BsrI ACTGG 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 63, 132
BssMI GATC 5 cut(s) 57, 157, 328, 337, 393
BssSI CACGAG 1 cut(s) 387
BssT1I CCWWGG 2 cut(s) 63, 132
Bst2BI CACGAG 1 cut(s) 387
Bst4CI ACNGT 2 cut(s) 169, 335
BstAUI TGTACA 1 cut(s) 201
BstBI TTCGAA 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 351
BstKTI GATC 5 cut(s) 60, 160, 331, 340, 396
BstMAI GTCTC 1 cut(s) 81
BstMBI GATC 5 cut(s) 57, 157, 328, 337, 393
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 3 cut(s) 254, 434, 443
BstV1I GCAGC 1 cut(s) 257
BstV2I GAAGAC 2 cut(s) 369, 409
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 351
BtsIMutI CAGTG 2 cut(s) 174, 331
Cfr13I GGNCC 1 cut(s) 129
Csp6I GTAC 3 cut(s) 178, 202, 310
CviAII CATG 1 cut(s) 64
CviJI RGCY 8 cut(s) 5, 106, 125, 131, 218, 352, 386, 411
CviKI_1 RGCY 8 cut(s) 5, 106, 125, 131, 218, 352, 386, 411
CviQI GTAC 3 cut(s) 178, 202, 310
DpnI GATC 5 cut(s) 59, 159, 330, 339, 395
DpnII GATC 5 cut(s) 57, 157, 328, 337, 393
DraIII CACNNNGTG 1 cut(s) 199
Eco130I CCWWGG 2 cut(s) 63, 132
EcoT14I CCWWGG 2 cut(s) 63, 132
ErhI CCWWGG 2 cut(s) 63, 132
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 1 cut(s) 67
FaiI YATR 1 cut(s) 65
FatI CATG 1 cut(s) 63
FauI CCCGC 1 cut(s) 89
FbaI TGATCA 2 cut(s) 157, 337
Fnu4HI GCNGC 3 cut(s) 33, 246, 384
FokI GGATG 1 cut(s) 358
Fsp4HI GCNGC 3 cut(s) 33, 246, 384
FspBI CTAG 2 cut(s) 17, 264
GluI GCNGC 3 cut(s) 33, 246, 384
GsaI CCCAGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 131
HapII CCGG 1 cut(s) 297
Hin1II CATG 1 cut(s) 67
HindIII AAGCTT 2 cut(s) 123, 350
HinfI GANTC 1 cut(s) 43
HpaII CCGG 1 cut(s) 297
Hpy166II GTNNAC 2 cut(s) 202, 211
Hpy188I TCNGA 3 cut(s) 42, 86, 328
Hpy8I GTNNAC 2 cut(s) 202, 211
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 2 cut(s) 169, 335
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 434, 443
HpySE526I ACGT 1 cut(s) 363
Hsp92II CATG 1 cut(s) 67
Ksp22I TGATCA 2 cut(s) 157, 337
Kzo9I GATC 5 cut(s) 57, 157, 328, 337, 393
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 5 cut(s) 66, 204, 272, 310, 326
Lsp1109I GCAGC 1 cut(s) 257
MaeI CTAG 2 cut(s) 17, 264
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 2 cut(s) 19, 364
MalI GATC 5 cut(s) 59, 159, 330, 339, 395
MboI GATC 5 cut(s) 57, 157, 328, 337, 393
MboII GAAGA 4 cut(s) 38, 369, 391, 409
MfeI CAATTG 1 cut(s) 447
MluCI AATT 2 cut(s) 109, 447
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 1 cut(s) 195
MseI TTAA 2 cut(s) 26, 360
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 297
MunI CAATTG 1 cut(s) 447
MwoI GCNNNNNNNGC 3 cut(s) 254, 434, 443
NcoI CCATGG 1 cut(s) 63
NdeII GATC 5 cut(s) 57, 157, 328, 337, 393
NlaIII CATG 1 cut(s) 67
NmuCI GTSAC 1 cut(s) 19
NspV TTCGAA 1 cut(s) 8
PcsI WCGNNNNNNNCGW 1 cut(s) 87
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 3 cut(s) 34, 247, 385
Ple19I CGATCG 1 cut(s) 60
Psp1406I AACGTT 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 218
PspPI GGNCC 1 cut(s) 129
PvuI CGATCG 1 cut(s) 60
RgaI GCGATCGC 1 cut(s) 60
RsaI GTAC 3 cut(s) 179, 203, 311
RsaNI GTAC 3 cut(s) 178, 202, 310
SaqAI TTAA 2 cut(s) 26, 360
SatI GCNGC 3 cut(s) 33, 246, 384
Sau3AI GATC 5 cut(s) 57, 157, 328, 337, 393
Sau96I GGNCC 1 cut(s) 129
SetI ASST 8 cut(s) 26, 108, 127, 187, 210, 220, 354, 366
SfaAI GCGATCGC 1 cut(s) 60
SfuI TTCGAA 1 cut(s) 8
SgfI GCGATCGC 1 cut(s) 60
SpeI ACTAGT 2 cut(s) 16, 263
Sse9I AATT 2 cut(s) 109, 447
SsiI CCGC 4 cut(s) 33, 96, 294, 383
SspMI CTAG 2 cut(s) 17, 264
StyI CCWWGG 2 cut(s) 63, 132
TaaI ACNGT 2 cut(s) 169, 335
TaiI ACGT 1 cut(s) 366
TaqI TCGA 2 cut(s) 8, 114
TasI AATT 2 cut(s) 109, 447
TatI WGTACW 2 cut(s) 177, 201
TauI GCSGC 2 cut(s) 35, 386
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 2 cut(s) 26, 360
Tru9I TTAA 2 cut(s) 26, 360
TscAI CASTG 2 cut(s) 174, 338
TseFI GTSAC 1 cut(s) 19
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 362
TspGWI ACGGA 2 cut(s) 228, 383
TspRI CASTG 2 cut(s) 174, 338
XapI RAATTY 1 cut(s) 109
XspI CTAG 2 cut(s) 17, 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.