MD06G1068300.v1.1

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000318
Physical Location & Seq
Forward (+)
16137939 .. 16138582
644 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1068300.v1.1.491

Sequence Viewer

Length: 432 bp
ATGACTTCTTCCTGGCTCTTCATAATCCTTACTGTTCTTGCAACTTTTGCACCTTCGATTTTGGCCACAGATTATGTTGTTGGTGACGACAAAGGGTGGACAATTAATTTCGATTACCAAGCTTGGGCTTGGGGAAATATGTTCTTTGTTGGCGACAACCTTGGAGTTCACAACGTGTACAAAGTGAATGGCACTGGCTTTCAAGAATGTTTAGCTCCATTGGACTCTGTGCCATTAACAAGTGGAAAGGATGTGATGAACCTTGCAACCTTCGGAAGAAAATGGTACATTTGCGGTGTTTCGCGGCATTGTTTAGATGTCGGCCAGAAGCTTGCTATAACTGTGTTTCCATCATCATTCGCACCTAGCCCTAGCCCCATCTCAGAAAAGAGCGACCGAAAGTTTTCTGCTCCTAGCCTTAGTCCCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

144

Amino Acids

15.65

Weight (kDa)

6.02

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 105 2.2e-12 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 304
AciI CCGC 2 cut(s) 294, 304
AcoI YGGCCR 2 cut(s) 63, 322
AdeI CACNNNGTG 1 cut(s) 175
AfaI GTAC 2 cut(s) 179, 287
AfiI CCNNNNNNNGG 1 cut(s) 124
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 1 cut(s) 203
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 3 cut(s) 122, 215, 331
AluI AGCT 3 cut(s) 122, 215, 331
AoxI GGCC 2 cut(s) 63, 322
AseI ATTAAT 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 403
AsuHPI GGTGA 1 cut(s) 95
BalI TGGCCA 1 cut(s) 65
BccI CCATC 2 cut(s) 358, 386
BciT130I CCWGG 1 cut(s) 13
BfaI CTAG 4 cut(s) 366, 372, 414, 430
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 13
BmrFI CCNGG 1 cut(s) 13
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 1 cut(s) 199
Bsh1236I CGCG 1 cut(s) 304
Bsh1285I CGRYCG 1 cut(s) 397
BshFI GGCC 2 cut(s) 65, 324
BsiEI CGRYCG 1 cut(s) 397
BslFI GGGAC 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 408
BsnI GGCC 2 cut(s) 65, 324
Bsp1407I TGTACA 1 cut(s) 177
BspACI CCGC 2 cut(s) 294, 304
BspANI GGCC 2 cut(s) 65, 324
BspCNI CTCAG 1 cut(s) 395
BspFNI CGCG 1 cut(s) 304
BspQI GCTCTTC 1 cut(s) 23
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 1 cut(s) 160
BssT1I CCWWGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 2 cut(s) 34, 343
Bst6I CTCTTC 1 cut(s) 23
BstAPI GCANNNNNTGC 1 cut(s) 47
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 2 cut(s) 382, 419
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 304
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 1 cut(s) 47
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 11
BstUI CGCG 1 cut(s) 304
BsuRI GGCC 2 cut(s) 65, 324
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 192
Cac8I GCNNGC 1 cut(s) 333
Csp6I GTAC 2 cut(s) 178, 286
CviQI GTAC 2 cut(s) 178, 286
DdeI CTNAG 2 cut(s) 382, 419
DraIII CACNNNGTG 1 cut(s) 175
EaeI YGGCCR 2 cut(s) 63, 322
Eam1104I CTCTTC 1 cut(s) 23
EarI CTCTTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 11
EcoT14I CCWWGG 1 cut(s) 160
ErhI CCWWGG 1 cut(s) 160
FaiI YATR 4 cut(s) 23, 75, 140, 338
FaqI GGGAC 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 305
FspBI CTAG 4 cut(s) 366, 372, 414, 430
GluI GCNGC 1 cut(s) 305
HaeIII GGCC 2 cut(s) 65, 324
HindIII AAGCTT 2 cut(s) 120, 329
HinfI GANTC 1 cut(s) 224
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 3 cut(s) 99, 169, 178
Hpy188I TCNGA 2 cut(s) 275, 385
Hpy188III TCNNGA 1 cut(s) 203
Hpy8I GTNNAC 3 cut(s) 99, 169, 178
HpyAV CCTTC 2 cut(s) 63, 280
HpyCH4III ACNGT 2 cut(s) 34, 343
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 3 cut(s) 41, 50, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 47
HpyF3I CTNAG 2 cut(s) 382, 419
HpySE526I ACGT 1 cut(s) 174
LguI GCTCTTC 1 cut(s) 23
LmnI GCTCC 2 cut(s) 220, 415
LpnPI CCDG 3 cut(s) 25, 180, 338
MaeI CTAG 4 cut(s) 366, 372, 414, 430
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 83
MboII GAAGA 2 cut(s) 10, 288
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 2 cut(s) 102, 106
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 218
Mox20I TGGCCA 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 403
MscI TGGCCA 1 cut(s) 65
MseI TTAA 2 cut(s) 105, 236
Msp20I TGGCCA 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 13
MvnI CGCG 1 cut(s) 304
MwoI GCNNNNNNNGC 1 cut(s) 47
NmuCI GTSAC 1 cut(s) 83
PciSI GCTCTTC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 403
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PshBI ATTAAT 1 cut(s) 105
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
RsaI GTAC 2 cut(s) 179, 287
RsaNI GTAC 2 cut(s) 178, 286
SapI GCTCTTC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 105, 236
SatI GCNGC 1 cut(s) 305
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 13
Sse9I AATT 2 cut(s) 102, 106
SsiI CCGC 2 cut(s) 294, 304
SspMI CTAG 4 cut(s) 366, 372, 414, 430
StyD4I CCNGG 1 cut(s) 11
StyI CCWWGG 1 cut(s) 160
TaaI ACNGT 2 cut(s) 34, 343
TaiI ACGT 1 cut(s) 177
TaqI TCGA 2 cut(s) 56, 111
TaqII GACCGA 1 cut(s) 411
TasI AATT 2 cut(s) 102, 106
TatI WGTACW 1 cut(s) 177
TauI GCSGC 1 cut(s) 307
Tru1I TTAA 2 cut(s) 105, 236
Tru9I TTAA 2 cut(s) 105, 236
TscAI CASTG 1 cut(s) 199
TseFI GTSAC 1 cut(s) 83
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 2 cut(s) 10, 272
TspRI CASTG 1 cut(s) 199
VspI ATTAAT 1 cut(s) 105
XmnI GAANNNNTTC 1 cut(s) 403
XspI CTAG 4 cut(s) 366, 372, 414, 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.