FvH4_6g39940

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000318
Physical Location & Seq
Reverse (-)
31546554 .. 31547157
604 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g39940.t1

Sequence Viewer

Length: 492 bp
ATGGCCTCTTCCCAGCTCTTCTTCATCAGCCTTGCCATTCTAGCAATTGTTGCCCCTTCAACTTTAGCCACAGATTTTACTGTTGGCGATGACAAAGGTTGGACCATTAATGTTGATTACCAAGCCTGGGCTCAGGGAAAGCTCTTCTATGTTGGTGACAACCTCGTTTTTAACTACCCAGAAGGAGCTCACAGTGTTCTCAAAGTGAATGGAACTGGGTTCCAACAATGTGCAGCTCCTGCAGGCACTGTGGCACTAACGAGTGGAAAGGATGTGATAAACCTAGCAACTCCAGGAAGAAAGTGGTACATTTGTGGTGTTTCTAAGCACTGTGAAGTTGGACCCCAGAAGTTGTTCATAACTGTGATGCCAGCTTCCTCTGCTCCTAGCCCAAGCCCCACTGCTACCTCAGCAGCAACTACCAGTTTTTTTAATGGAGCAAGATTTAGGTGGATGATCGTTGTTATAGGCATTCTTGGGATATTCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

164

Amino Acids

17.33

Weight (kDa)

8.49

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 114 5.7e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 1 cut(s) 60
AjnI CCWGG 2 cut(s) 125, 292
AluBI AGCT 5 cut(s) 16, 142, 188, 236, 374
AluI AGCT 5 cut(s) 16, 142, 188, 236, 374
Alw21I GWGCWC 1 cut(s) 190
AlwNI CAGNNNCTG 2 cut(s) 239, 248
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 233, 413
AseI ATTAAT 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 102, 341
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 2 cut(s) 102, 341
BaeI ACNNNNGTAYC 2 cut(s) 298, 331
BanII GRGCYC 2 cut(s) 133, 190
Bbv12I GWGCWC 1 cut(s) 190
BbvCI CCTCAGC 1 cut(s) 409
BbvI GCAGC 2 cut(s) 245, 425
BciT130I CCWGG 2 cut(s) 127, 294
BfaI CTAG 3 cut(s) 41, 284, 387
BfmI CTRYAG 1 cut(s) 240
BisI GCNGC 2 cut(s) 234, 414
BlsI GCNGC 2 cut(s) 235, 415
Bme1390I CCNGG 2 cut(s) 127, 294
Bme18I GGWCC 2 cut(s) 102, 341
BmgT120I GGNCC 2 cut(s) 102, 341
BmiI GGNNCC 2 cut(s) 221, 343
BmrFI CCNGG 2 cut(s) 127, 294
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 225
BpmI CTGGAG 1 cut(s) 276
Bpu10I CCTNAGC 2 cut(s) 132, 409
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 220, 423
BseBI CCWGG 2 cut(s) 127, 294
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 2 cut(s) 277, 459
BseLI CCNNNNNNNGG 1 cut(s) 127
BseMII CTCAG 2 cut(s) 146, 423
BseNI ACTGG 2 cut(s) 220, 423
BseXI GCAGC 2 cut(s) 245, 425
BseYI CCCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 127
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 133, 190
Bsp143I GATC 1 cut(s) 456
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 145, 422
BspLI GGNNCC 2 cut(s) 221, 343
BspMAI CTGCAG 1 cut(s) 244
BspQI GCTCTTC 2 cut(s) 23, 149
BsrI ACTGG 2 cut(s) 220, 423
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 1 cut(s) 456
Bst2UI CCWGG 2 cut(s) 127, 294
Bst4CI ACNGT 5 cut(s) 82, 194, 250, 332, 364
Bst6I CTCTTC 3 cut(s) 13, 23, 149
BstAPI GCANNNNNTGC 2 cut(s) 50, 239
BstC8I GCNNGC 2 cut(s) 244, 372
BstDEI CTNAG 3 cut(s) 132, 324, 409
BstF5I GGATG 2 cut(s) 277, 459
BstKTI GATC 1 cut(s) 459
BstMBI GATC 1 cut(s) 456
BstMWI GCNNNNNNNGC 5 cut(s) 41, 50, 239, 380, 410
BstNI CCWGG 2 cut(s) 127, 294
BstSCI CCNGG 2 cut(s) 125, 292
BstSFI CTRYAG 1 cut(s) 240
BstV1I GCAGC 2 cut(s) 245, 425
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 102
BtsCI GGATG 2 cut(s) 277, 459
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 4 cut(s) 199, 246, 328, 399
Cac8I GCNNGC 2 cut(s) 244, 372
CaiI CAGNNNCTG 2 cut(s) 239, 248
Cfr13I GGNCC 2 cut(s) 102, 341
Csp6I GTAC 1 cut(s) 307
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 3 cut(s) 132, 324, 409
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
Eam1104I CTCTTC 3 cut(s) 13, 23, 149
EarI CTCTTC 3 cut(s) 13, 23, 149
Ecl136II GAGCTC 1 cut(s) 188
Eco24I GRGCYC 2 cut(s) 133, 190
Eco47I GGWCC 2 cut(s) 102, 341
Eco53kI GAGCTC 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 188
EcoRII CCWGG 2 cut(s) 125, 292
EcoT38I GRGCYC 2 cut(s) 133, 190
FaiI YATR 3 cut(s) 150, 359, 467
Fnu4HI GCNGC 2 cut(s) 234, 414
FokI GGATG 2 cut(s) 284, 466
FriOI GRGCYC 2 cut(s) 133, 190
Fsp4HI GCNGC 2 cut(s) 234, 414
FspBI CTAG 3 cut(s) 41, 284, 387
GluI GCNGC 2 cut(s) 234, 414
GsaI CCCAGC 1 cut(s) 16
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 1 cut(s) 5
HphI GGTGA 1 cut(s) 167
HpyAV CCTTC 2 cut(s) 66, 176
HpyCH4III ACNGT 5 cut(s) 82, 194, 250, 332, 364
HpyCH4V TGCA 2 cut(s) 233, 242
HpyF10VI GCNNNNNNNGC 5 cut(s) 41, 50, 239, 380, 410
HpyF3I CTNAG 3 cut(s) 132, 324, 409
Kzo9I GATC 1 cut(s) 456
LguI GCTCTTC 2 cut(s) 23, 149
LmnI GCTCC 4 cut(s) 185, 241, 388, 437
Lsp1109I GCAGC 2 cut(s) 245, 425
LweI GCATC 1 cut(s) 357
MaeI CTAG 3 cut(s) 41, 284, 387
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 4 cut(s) 10, 13, 136, 309
MfeI CAATTG 1 cut(s) 45
MhlI GDGCHC 2 cut(s) 133, 190
MluCI AATT 1 cut(s) 45
MmeI TCCRAC 3 cut(s) 80, 247, 319
MnlI CCTC 4 cut(s) 16, 173, 388, 418
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 3 cut(s) 108, 171, 432
MslI CAYNNNNRTG 1 cut(s) 362
MspR9I CCNGG 2 cut(s) 127, 294
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 2 cut(s) 127, 294
MwoI GCNNNNNNNGC 5 cut(s) 41, 50, 239, 380, 410
NdeII GATC 1 cut(s) 456
NlaIV GGNNCC 2 cut(s) 221, 343
NmuCI GTSAC 1 cut(s) 155
PciSI GCTCTTC 2 cut(s) 23, 149
PctI GAATGC 1 cut(s) 471
PdmI GAANNNNTTC 1 cut(s) 353
PfoI TCCNGGA 1 cut(s) 292
PkrI GCNGC 2 cut(s) 235, 415
PshBI ATTAAT 1 cut(s) 108
Psp124BI GAGCTC 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 125, 292
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 2 cut(s) 125, 292
PspN4I GGNNCC 2 cut(s) 221, 343
PspPI GGNCC 2 cut(s) 102, 341
PstI CTGCAG 1 cut(s) 244
PstNI CAGNNNCTG 2 cut(s) 239, 248
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 362
SacI GAGCTC 1 cut(s) 190
SapI GCTCTTC 2 cut(s) 23, 149
SaqAI TTAA 3 cut(s) 108, 171, 432
SatI GCNGC 2 cut(s) 234, 414
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 2 cut(s) 102, 341
SbfI CCTGCAGG 1 cut(s) 244
ScrFI CCNGG 2 cut(s) 127, 294
SdaI CCTGCAGG 1 cut(s) 244
SduI GDGCHC 2 cut(s) 133, 190
SfaNI GCATC 1 cut(s) 357
SfcI CTRYAG 1 cut(s) 240
SinI GGWCC 2 cut(s) 102, 341
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse8387I CCTGCAGG 1 cut(s) 244
Sse9I AATT 1 cut(s) 45
SspMI CTAG 3 cut(s) 41, 284, 387
SstI GAGCTC 1 cut(s) 190
StyD4I CCNGG 2 cut(s) 125, 292
TaaI ACNGT 5 cut(s) 82, 194, 250, 332, 364
TasI AATT 1 cut(s) 45
Tru1I TTAA 3 cut(s) 108, 171, 432
Tru9I TTAA 3 cut(s) 108, 171, 432
TscAI CASTG 4 cut(s) 199, 253, 335, 406
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 2 cut(s) 233, 413
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 13, 346
TspRI CASTG 4 cut(s) 199, 253, 335, 406
VpaK11BI GGWCC 2 cut(s) 102, 341
VspI ATTAAT 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 3 cut(s) 41, 284, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.