Rorug07G0059800

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000318
Physical Location & Seq
Forward (+)
4283238 .. 4283930
693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0059800.1

Sequence Viewer

Length: 693 bp
ATGCTCTCTCTCTCTCTAGAGAGGCAAAACATAAGGCCGCAAACTGCCTTGATTGGAGGCGGCGGTACTGCAAATCTATTGACTCTCGGCAGGGAGGTTTTCCGGCCACGCAGTGGCTCGGTTCCTTGGGGCTGGAAGGGAGGCGGCTTGCCTTTTTCTTCTACTCTACTTGGCGGCGATGGCGAATGGTTTCGTCAGTGTCCCATGATGGTGGTCCGATGGGCTGCGAAGACTCGAGCTGGTCTCTCATCGGCGTCAAGCGGCGTTGGGCTGTTCGCTCTGGGCGAGGTCGGCTGGGGATTGGTTGTTGGCTGGGGTCGAGGATATCTGGGTTCAGATCCGATCGGGGACAGTTTGGAAGTGATGGAGGGCTGTGATCGAGCACTCTCTGAGGGTGTGGTGAGTGATCCCGGGGGCTATACTAGATCTGGATCGGTTTCAGGCCAAGGAACTGTTGCGGCTACTGGAGGGGCGGCTCGGACGGCGAGTGTCTGCGGCGGCGGCGTGGCTGATGGATCGTGGCTGGAAAGATATGTGTGGGCTCATTGGGTTAGGGTTTTGGTTTACCCTACTATTTGGGCCTGCATTTGGAGTGGATGGGTTGCATGGGCCTTGCTCCGGTCTGTGGGCTGGATTACCCTTATGCTATGGGGCTGGATGAATTGGGTCTCTATGGCCCATAGTACTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

230

Amino Acids

24.39

Weight (kDa)

8.83

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 113
AclWI GGATC 4 cut(s) 332, 401, 439, 523
AcoI YGGCCR 1 cut(s) 104
AcyI GRCGYC 1 cut(s) 254
AdeI CACNNNGTG 1 cut(s) 113
AfaI GTAC 2 cut(s) 67, 685
AfiI CCNNNNNNNGG 4 cut(s) 113, 588, 618, 625
AluBI AGCT 1 cut(s) 239
AluI AGCT 1 cut(s) 239
Alw21I GWGCWC 1 cut(s) 385
Alw26I GTCTC 2 cut(s) 248, 673
AlwI GGATC 4 cut(s) 332, 401, 439, 523
Ama87I CYCGRG 2 cut(s) 234, 410
AoxI GGCC 6 cut(s) 35, 104, 442, 579, 609, 675
ApeKI GCWGC 1 cut(s) 224
Asp700I GAANNNNTTC 1 cut(s) 189
AspS9I GGNCC 4 cut(s) 214, 579, 609, 676
AsuC2I CCSGG 2 cut(s) 411, 412
AsuHPI GGTGA 1 cut(s) 412
AvaI CYCGRG 2 cut(s) 234, 410
AvaII GGWCC 1 cut(s) 214
BanII GRGCYC 1 cut(s) 544
BbsI GAAGAC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 385
BbvI GCAGC 1 cut(s) 211
BccI CCATC 6 cut(s) 173, 202, 213, 358, 506, 591
BceAI ACGGC 1 cut(s) 498
BcnI CCSGG 2 cut(s) 411, 412
BcoDI GTCTC 2 cut(s) 248, 673
BfaI CTAG 2 cut(s) 17, 423
BglII AGATCT 1 cut(s) 425
BmcAI AGTACT 1 cut(s) 685
Bme1390I CCNGG 2 cut(s) 411, 412
Bme18I GGWCC 1 cut(s) 214
BmeT110I CYCGRG 2 cut(s) 234, 410
BmgT120I GGNCC 4 cut(s) 214, 579, 609, 676
BmiI GGNNCC 1 cut(s) 123
BmrFI CCNGG 2 cut(s) 411, 412
BpiI GAAGAC 1 cut(s) 236
BplI GAGNNNNNCTC 2 cut(s) 228, 260
BpmI CTGGAG 1 cut(s) 486
BpuMI CCSGG 2 cut(s) 411, 412
BsaBI GATNNNNATC 1 cut(s) 430
BsaHI GRCGYC 1 cut(s) 254
BsaI GGTCTC 2 cut(s) 248, 673
BsaJI CCNNGG 4 cut(s) 125, 410, 411, 445
BsaWI WCCGGW 1 cut(s) 618
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 588, 618, 625
Bse1I ACTGG 1 cut(s) 469
Bse8I GATNNNNATC 1 cut(s) 430
BseDI CCNNGG 4 cut(s) 125, 410, 411, 445
BseGI GGATG 2 cut(s) 602, 663
BseJI GATNNNNATC 1 cut(s) 430
BseLI CCNNNNNNNGG 4 cut(s) 113, 588, 618, 625
BseMII CTCAG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 469
BseXI GCAGC 1 cut(s) 211
BseYI CCCAGC 2 cut(s) 294, 312
Bsh1285I CGRYCG 1 cut(s) 345
BshFI GGCC 6 cut(s) 37, 106, 444, 581, 611, 677
BsiEI CGRYCG 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 2 cut(s) 234, 410
BsiSI CCGG 3 cut(s) 103, 411, 619
BslFI GGGAC 2 cut(s) 186, 362
BslI CCNNNNNNNGG 4 cut(s) 113, 588, 618, 625
BsmAI GTCTC 2 cut(s) 248, 673
BsmFI GGGAC 2 cut(s) 186, 362
BsnI GGCC 6 cut(s) 37, 106, 444, 581, 611, 677
Bso31I GGTCTC 2 cut(s) 248, 673
BsoBI CYCGRG 2 cut(s) 234, 410
Bsp1286I GDGCHC 2 cut(s) 385, 544
Bsp143I GATC 7 cut(s) 337, 342, 376, 406, 425, 431, 515
BspANI GGCC 6 cut(s) 37, 106, 444, 581, 611, 677
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 123
BspPI GGATC 4 cut(s) 332, 401, 439, 523
BspTNI GGTCTC 2 cut(s) 248, 673
BsrI ACTGG 1 cut(s) 469
BssECI CCNNGG 4 cut(s) 125, 410, 411, 445
BssMI GATC 7 cut(s) 337, 342, 376, 406, 425, 431, 515
BssNI GRCGYC 1 cut(s) 254
BssT1I CCWWGG 2 cut(s) 125, 445
Bst4CI ACNGT 3 cut(s) 353, 454, 688
BstACI GRCGYC 1 cut(s) 254
BstC8I GCNNGC 2 cut(s) 149, 583
BstDEI CTNAG 1 cut(s) 390
BstF5I GGATG 2 cut(s) 602, 663
BstKTI GATC 7 cut(s) 340, 345, 379, 409, 428, 434, 518
BstMAI GTCTC 2 cut(s) 248, 673
BstMBI GATC 7 cut(s) 337, 342, 376, 406, 425, 431, 515
BstMCI CGRYCG 1 cut(s) 345
BstMWI GCNNNNNNNGC 4 cut(s) 180, 291, 482, 501
BstSCI CCNGG 2 cut(s) 409, 410
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 236
BstX2I RGATCY 2 cut(s) 337, 425
BstXI CCANNNNNNTGG 1 cut(s) 211
BstYI RGATCY 2 cut(s) 337, 425
BsuRI GGCC 6 cut(s) 37, 106, 444, 581, 611, 677
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 602, 663
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 203
Cac8I GCNNGC 2 cut(s) 149, 583
Cfr13I GGNCC 4 cut(s) 214, 579, 609, 676
Cfr9I CCCGGG 1 cut(s) 410
CseI GACGC 1 cut(s) 243
Csp6I GTAC 2 cut(s) 66, 684
CviAII CATG 2 cut(s) 205, 606
CviQI GTAC 2 cut(s) 66, 684
DdeI CTNAG 1 cut(s) 390
DpnI GATC 7 cut(s) 339, 344, 378, 408, 427, 433, 517
DpnII GATC 7 cut(s) 337, 342, 376, 406, 425, 431, 515
DraIII CACNNNGTG 1 cut(s) 113
EaeI YGGCCR 1 cut(s) 104
Eco130I CCWWGG 2 cut(s) 125, 445
Eco24I GRGCYC 1 cut(s) 544
Eco31I GGTCTC 2 cut(s) 248, 673
Eco32I GATATC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 214
Eco88I CYCGRG 2 cut(s) 234, 410
EcoRV GATATC 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 125, 445
EcoT38I GRGCYC 1 cut(s) 544
ErhI CCWWGG 2 cut(s) 125, 445
FaeI CATG 2 cut(s) 208, 609
FaiI YATR 9 cut(s) 32, 206, 420, 534, 607, 644, 649, 674, 681
FaqI GGGAC 2 cut(s) 186, 362
FatI CATG 2 cut(s) 204, 605
FokI GGATG 2 cut(s) 609, 670
FriOI GRGCYC 1 cut(s) 544
FspBI CTAG 2 cut(s) 17, 423
GsaI CCCAGC 2 cut(s) 298, 316
GsuI CTGGAG 1 cut(s) 486
HaeIII GGCC 6 cut(s) 37, 106, 444, 581, 611, 677
HapII CCGG 3 cut(s) 103, 411, 619
HgaI GACGC 1 cut(s) 243
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 2 cut(s) 208, 609
HinfI GANTC 2 cut(s) 82, 232
HpaII CCGG 3 cut(s) 103, 411, 619
HphI GGTGA 1 cut(s) 412
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 5 cut(s) 218, 337, 342, 391, 480
Hpy188III TCNNGA 2 cut(s) 17, 429
Hpy8I GTNNAC 1 cut(s) 565
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 3 cut(s) 353, 454, 688
HpyCH4V TGCA 3 cut(s) 71, 585, 605
HpyF10VI GCNNNNNNNGC 4 cut(s) 180, 291, 482, 501
HpyF3I CTNAG 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 2 cut(s) 208, 609
Kzo9I GATC 7 cut(s) 337, 342, 376, 406, 425, 431, 515
LmnI GCTCC 1 cut(s) 621
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 2 cut(s) 17, 423
MalI GATC 7 cut(s) 339, 344, 378, 408, 427, 433, 517
MboI GATC 7 cut(s) 337, 342, 376, 406, 425, 431, 515
MboII GAAGA 2 cut(s) 150, 241
MflI RGATCY 2 cut(s) 337, 425
MhlI GDGCHC 2 cut(s) 385, 544
MluCI AATT 1 cut(s) 661
MlyI GAGTC 2 cut(s) 76, 226
MnlI CCTC 9 cut(s) 15, 50, 88, 134, 280, 314, 361, 385, 461
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 1 cut(s) 691
MslI CAYNNNNRTG 1 cut(s) 209
MspI CCGG 3 cut(s) 103, 411, 619
MspR9I CCNGG 2 cut(s) 411, 412
MwoI GCNNNNNNNGC 4 cut(s) 180, 291, 482, 501
NciI CCSGG 2 cut(s) 411, 412
NdeII GATC 7 cut(s) 337, 342, 376, 406, 425, 431, 515
NlaIII CATG 2 cut(s) 208, 609
NlaIV GGNNCC 1 cut(s) 123
NmeAIII GCCGAG 1 cut(s) 66
PaeR7I CTCGAG 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 113
Ple19I CGATCG 1 cut(s) 345
PleI GAGTC 2 cut(s) 76, 226
PpsI GAGTC 2 cut(s) 76, 226
PspFI CCCAGC 2 cut(s) 294, 312
PspN4I GGNNCC 1 cut(s) 123
PspPI GGNCC 4 cut(s) 214, 579, 609, 676
PspXI VCTCGAGB 1 cut(s) 234
PsuI RGATCY 2 cut(s) 337, 425
PvuI CGATCG 1 cut(s) 345
RsaI GTAC 2 cut(s) 67, 685
RsaNI GTAC 2 cut(s) 66, 684
RseI CAYNNNNRTG 1 cut(s) 209
SaqAI TTAA 1 cut(s) 691
Sau3AI GATC 7 cut(s) 337, 342, 376, 406, 425, 431, 515
Sau96I GGNCC 4 cut(s) 214, 579, 609, 676
ScaI AGTACT 1 cut(s) 685
SchI GAGTC 2 cut(s) 76, 226
ScrFI CCNGG 2 cut(s) 411, 412
SduI GDGCHC 2 cut(s) 385, 544
SetI ASST 3 cut(s) 99, 241, 291
Sfr274I CTCGAG 1 cut(s) 234
SinI GGWCC 1 cut(s) 214
SlaI CTCGAG 1 cut(s) 234
SmaI CCCGGG 1 cut(s) 412
SmiMI CAYNNNNRTG 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
Sse9I AATT 1 cut(s) 661
SspMI CTAG 2 cut(s) 17, 423
StyD4I CCNGG 2 cut(s) 409, 410
StyI CCWWGG 2 cut(s) 125, 445
TaaI ACNGT 3 cut(s) 353, 454, 688
TaqI TCGA 3 cut(s) 235, 319, 379
TasI AATT 1 cut(s) 661
TatI WGTACW 1 cut(s) 683
Tru1I TTAA 1 cut(s) 691
Tru9I TTAA 1 cut(s) 691
TscAI CASTG 2 cut(s) 118, 203
TseI GCWGC 1 cut(s) 224
TspDTI ATGAA 1 cut(s) 674
TspMI CCCGGG 1 cut(s) 410
TspRI CASTG 2 cut(s) 118, 203
Van91I CCANNNNNTGG 1 cut(s) 113
VpaK11BI GGWCC 1 cut(s) 214
XbaI TCTAGA 1 cut(s) 16
XhoI CTCGAG 1 cut(s) 234
XmaI CCCGGG 1 cut(s) 410
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 17, 423
ZrmI AGTACT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.