Prupe.7G009100_v2.0.a1

Stellacyanin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0000318
Physical Location & Seq
Reverse (-)
1221176 .. 1222278
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G009100.1

Sequence Viewer

Length: 483 bp
ATGGCTTCGATTAAGATTGTCGCCCTAATTACCATGGTTGTGATTCTTCTTCCTACAATTGCCATGGCAACGGAGTTCATCGTTGGAGATGCTAACGGCTGGAAACCTAATTTTGACTACCAAGCTTGGGCCAAAGACAAAGTATTTCATGTTGGTGATACACTAGTGTTCAACTACCCGTCCCCACCACACAACGTGTTCAAGGTGAATGGAACTGGGTTCAAGGAATGTGTTAAGCCAACAACAAATGATCAACCACCACTTACCTCTGGAAACGACAAAATAGAGCTAAAGACTACTGGAAATAAATGGTACATTTGTTCTACTAGCAACCACTGTGCTTTGGGCCAGAAACTTAACATCACTGTTATGGAGGGTCCGCCTGCACCAGCTCCGTCCTCTGCTGTTCGTGGTTTCATCTTTTCTGGATACCAAGTCTTCATGGCCGCCATTGTTGGAGTTTTCATAGCTGTTGCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

161

Amino Acids

17.25

Weight (kDa)

8.44

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 380, 447
AcoI YGGCCR 1 cut(s) 444
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 1 cut(s) 314
AfiI CCNNNNNNNGG 1 cut(s) 127
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 3 cut(s) 172, 202, 223
AhlI ACTAGT 1 cut(s) 163
AluBI AGCT 4 cut(s) 125, 289, 392, 470
AluI AGCT 4 cut(s) 125, 289, 392, 470
AoxI GGCC 3 cut(s) 129, 346, 444
ApeKI GCWGC 1 cut(s) 476
AspS9I GGNCC 3 cut(s) 129, 346, 377
AsuHPI GGTGA 2 cut(s) 167, 217
AvaII GGWCC 1 cut(s) 377
BaeI ACNNNNGTAYC 4 cut(s) 150, 183, 304, 337
BbsI GAAGAC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 463
BceAI ACGGC 1 cut(s) 112
BciVI GTATCC 1 cut(s) 422
BclI TGATCA 1 cut(s) 250
BcuI ACTAGT 1 cut(s) 163
BfaI CTAG 2 cut(s) 164, 327
BfuI GTATCC 1 cut(s) 422
BisI GCNGC 2 cut(s) 447, 477
BlsI GCNGC 2 cut(s) 448, 478
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 3 cut(s) 129, 346, 377
BmiI GGNNCC 1 cut(s) 378
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 1 cut(s) 79
BmuI ACTGGG 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 430
BsaJI CCNNGG 2 cut(s) 33, 63
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse1I ACTGG 2 cut(s) 220, 304
BseDI CCNNGG 2 cut(s) 33, 63
BseLI CCNNNNNNNGG 1 cut(s) 127
BseNI ACTGG 2 cut(s) 220, 304
BseXI GCAGC 1 cut(s) 463
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 3 cut(s) 131, 348, 446
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 166
BsnI GGCC 3 cut(s) 131, 348, 446
Bsp143I GATC 1 cut(s) 250
Bsp19I CCATGG 2 cut(s) 33, 63
BspACI CCGC 2 cut(s) 380, 447
BspANI GGCC 3 cut(s) 131, 348, 446
BspLI GGNNCC 1 cut(s) 378
BsrI ACTGG 2 cut(s) 220, 304
BssECI CCNNGG 2 cut(s) 33, 63
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 2 cut(s) 33, 63
Bst4CI ACNGT 2 cut(s) 338, 367
BstC8I GCNNGC 1 cut(s) 384
BstDSI CCRYGG 2 cut(s) 33, 63
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstV1I GCAGC 1 cut(s) 463
BstV2I GAAGAC 1 cut(s) 430
BsuI GTATCC 1 cut(s) 422
BsuRI GGCC 3 cut(s) 131, 348, 446
BtgI CCRYGG 2 cut(s) 33, 63
BtsIMutI CAGTG 2 cut(s) 334, 363
Cac8I GCNNGC 1 cut(s) 384
Cfr13I GGNCC 3 cut(s) 129, 346, 377
Csp6I GTAC 1 cut(s) 313
CviAII CATG 4 cut(s) 34, 64, 149, 442
CviQI GTAC 1 cut(s) 313
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
DraIII CACNNNGTG 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 444
EciI GGCGGA 1 cut(s) 369
Eco130I CCWWGG 2 cut(s) 33, 63
Eco47I GGWCC 1 cut(s) 377
EcoT14I CCWWGG 2 cut(s) 33, 63
ErhI CCWWGG 2 cut(s) 33, 63
FaeI CATG 4 cut(s) 37, 67, 152, 445
FaiI YATR 6 cut(s) 35, 65, 150, 371, 443, 467
FaqI GGGAC 1 cut(s) 166
FatI CATG 4 cut(s) 33, 63, 148, 441
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 447, 477
Fsp4HI GCNGC 2 cut(s) 447, 477
FspBI CTAG 2 cut(s) 164, 327
GluI GCNGC 2 cut(s) 447, 477
HaeIII GGCC 3 cut(s) 131, 348, 446
Hin1II CATG 4 cut(s) 37, 67, 152, 445
HindIII AAGCTT 1 cut(s) 123
HinfI GANTC 1 cut(s) 43
HphI GGTGA 2 cut(s) 167, 217
Hpy188III TCNNGA 2 cut(s) 270, 426
HpyCH4III ACNGT 2 cut(s) 338, 367
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 4 cut(s) 37, 67, 152, 445
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 1 cut(s) 397
LpnPI CCDG 8 cut(s) 85, 201, 255, 285, 362, 396, 402, 411
Lsp1109I GCAGC 1 cut(s) 463
LweI GCATC 1 cut(s) 79
MaeI CTAG 2 cut(s) 164, 327
MaeII ACGT 1 cut(s) 195
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 3 cut(s) 38, 41, 430
MfeI CAATTG 1 cut(s) 57
MluCI AATT 3 cut(s) 27, 57, 109
MmeI TCCRAC 2 cut(s) 64, 436
MnlI CCTC 3 cut(s) 277, 367, 409
MseI TTAA 3 cut(s) 12, 234, 357
MslI CAYNNNNRTG 3 cut(s) 38, 153, 368
MunI CAATTG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 476
NcoI CCATGG 2 cut(s) 33, 63
NdeII GATC 1 cut(s) 250
NlaIII CATG 4 cut(s) 37, 67, 152, 445
NlaIV GGNNCC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 43
PkrI GCNGC 2 cut(s) 448, 478
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 3 cut(s) 129, 346, 377
RsaI GTAC 1 cut(s) 314
RsaNI GTAC 1 cut(s) 313
RseI CAYNNNNRTG 3 cut(s) 38, 153, 368
SaqAI TTAA 3 cut(s) 12, 234, 357
SatI GCNGC 2 cut(s) 447, 477
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 3 cut(s) 129, 346, 377
SetI ASST 8 cut(s) 109, 127, 198, 207, 269, 291, 394, 472
SfaNI GCATC 1 cut(s) 79
SinI GGWCC 1 cut(s) 377
SmiMI CAYNNNNRTG 3 cut(s) 38, 153, 368
SpeI ACTAGT 1 cut(s) 163
Sse9I AATT 3 cut(s) 27, 57, 109
SsiI CCGC 2 cut(s) 380, 447
SspMI CTAG 2 cut(s) 164, 327
StyI CCWWGG 2 cut(s) 33, 63
TaaI ACNGT 2 cut(s) 338, 367
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 8
TasI AATT 3 cut(s) 27, 57, 109
TauI GCSGC 1 cut(s) 449
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 3 cut(s) 12, 234, 357
Tru9I TTAA 3 cut(s) 12, 234, 357
TscAI CASTG 2 cut(s) 341, 370
TseI GCWGC 1 cut(s) 476
TspDTI ATGAA 5 cut(s) 67, 137, 406, 430, 454
TspGWI ACGGA 2 cut(s) 86, 384
TspRI CASTG 2 cut(s) 341, 370
VpaK11BI GGWCC 1 cut(s) 377
XspI CTAG 2 cut(s) 164, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.