Rh7BG188100

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000318
Physical Location & Seq
Reverse (-)
15154196 .. 15155448
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG188100.1

Sequence Viewer

Length: 639 bp
ATGGCCTCTTCCCAGCTCTTTATTATCTTTTCCATTCTAGCAGTTTTCGTCCCTTTGATTGTGGCCAAAGATTATGTGGTTGGTGACAAAGCAGGTTGGACAATTCAAGTTGATTATGAAGCTTGGGCAAAGGGAAAAAAATTTTCTGTTGGCGACAGACTCCTTTTTTTATATCCAAAAGGATCCCACAGTGTGGTTGAAGTGGAGGAGAAAGACTTTAATAGATGTACAGCTCCTACTGACGGTAAGGAATTAACGAGTGGAGAGGATGTGATCAAGCTTGATGCCCCAGGAAAGAAATATTTCTTTTGCAATGTTGGTAGACATTGTGACATGGGGAACCAGAAAGTTGCTATAAATGTGGAATCATCTTCACCTTCATCTTCATCTTCCTCTACTCCTAGCCCAAGCCCAAGTGAATCCAGCCCAACTGCCTCAAGCCCAAAACCGTCAAGCCCAGCACCCTCAAGCCCAGAGCCCTCAATCCCAGAGCCCTCAAGCCCAAGTAATTCCAGCTCACCTGCTTCCCCCAGCCCAGCAGCCCCAAGCCCTAGTACCTCTGGAGCAACCATCGGAGAAAGATACGGGTGGATGTTAATTATGGTCGTTATTATAGGGTTTCTCATTGGGAGTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

212

Amino Acids

22.29

Weight (kDa)

5.27

Isoelectric Point (pI)

72.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 9.4e-26 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 529
Acc36I ACCTGC 2 cut(s) 83, 529
AccB7I CCANNNNNTGG 1 cut(s) 193
AccI GTMKAC 1 cut(s) 322
AclWI GGATC 2 cut(s) 177, 190
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 140
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 2 cut(s) 229, 556
AfiI CCNNNNNNNGG 2 cut(s) 193, 242
AgsI TTSAA 2 cut(s) 107, 200
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 16, 122, 233, 280, 516
AluI AGCT 5 cut(s) 16, 122, 233, 280, 516
AlwI GGATC 2 cut(s) 177, 190
AoxI GGCC 2 cut(s) 3, 63
ApeKI GCWGC 1 cut(s) 539
ApoI RAATTY 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 302
AsuHPI GGTGA 3 cut(s) 95, 366, 510
BalI TGGCCA 1 cut(s) 65
BamHI GGATCC 1 cut(s) 182
BanII GRGCYC 2 cut(s) 480, 495
BbvI GCAGC 1 cut(s) 551
BccI CCATC 1 cut(s) 578
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 273
BfaI CTAG 3 cut(s) 38, 402, 552
BfuAI ACCTGC 2 cut(s) 83, 529
BisI GCNGC 1 cut(s) 540
BlsI GCNGC 1 cut(s) 541
Bme1390I CCNGG 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 184, 341
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 582
BpuEI CTTGAG 3 cut(s) 421, 451, 481
BsaJI CCNNGG 1 cut(s) 289
BsaXI ACNNNNNCTCC 2 cut(s) 255, 285
Bsc4I CCNNNNNNNGG 2 cut(s) 193, 242
Bse3DI GCAATG 1 cut(s) 319
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 2 cut(s) 274, 597
BseLI CCNNNNNNNGG 2 cut(s) 193, 242
BseMI GCAATG 1 cut(s) 319
BseRI GAGGAG 1 cut(s) 221
BseXI GCAGC 1 cut(s) 551
BseYI CCCAGC 4 cut(s) 12, 457, 530, 535
BshFI GGCC 2 cut(s) 5, 65
BslFI GGGAC 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 193, 242
BsmFI GGGAC 1 cut(s) 35
BsnI GGCC 2 cut(s) 5, 65
Bsp1286I GDGCHC 2 cut(s) 480, 495
Bsp1407I TGTACA 1 cut(s) 227
Bsp143I GATC 2 cut(s) 182, 273
BspANI GGCC 2 cut(s) 5, 65
BspLI GGNNCC 2 cut(s) 184, 341
BspMI ACCTGC 2 cut(s) 83, 529
BspPI GGATC 2 cut(s) 177, 190
BsrDI GCAATG 1 cut(s) 319
BsrGI TGTACA 1 cut(s) 227
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 2 cut(s) 182, 273
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 191, 245, 450
Bst6I CTCTTC 1 cut(s) 13
BstAUI TGTACA 1 cut(s) 227
BstF5I GGATG 2 cut(s) 274, 597
BstKTI GATC 2 cut(s) 185, 276
BstMBI GATC 2 cut(s) 182, 273
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 551
BstX2I RGATCY 1 cut(s) 182
BstYI RGATCY 1 cut(s) 182
BsuRI GGCC 2 cut(s) 5, 65
BtsCI GGATG 2 cut(s) 274, 597
BtsIMutI CAGTG 1 cut(s) 196
BveI ACCTGC 2 cut(s) 83, 529
Csp6I GTAC 2 cut(s) 228, 555
CviAII CATG 1 cut(s) 334
CviQI GTAC 2 cut(s) 228, 555
DpnI GATC 2 cut(s) 184, 275
DpnII GATC 2 cut(s) 182, 273
DraIII CACNNNGTG 1 cut(s) 193
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco24I GRGCYC 2 cut(s) 480, 495
EcoRII CCWGG 1 cut(s) 289
EcoT38I GRGCYC 2 cut(s) 480, 495
FaeI CATG 1 cut(s) 337
FaiI YATR 7 cut(s) 75, 117, 172, 335, 356, 602, 614
FaqI GGGAC 1 cut(s) 35
FatI CATG 1 cut(s) 333
FbaI TGATCA 1 cut(s) 273
FblI GTMKAC 1 cut(s) 322
Fnu4HI GCNGC 1 cut(s) 540
FokI GGATG 2 cut(s) 281, 604
FriOI GRGCYC 2 cut(s) 480, 495
Fsp4HI GCNGC 1 cut(s) 540
FspBI CTAG 3 cut(s) 38, 402, 552
GluI GCNGC 1 cut(s) 540
GsaI CCCAGC 4 cut(s) 16, 461, 534, 539
GsuI CTGGAG 1 cut(s) 582
HaeIII GGCC 2 cut(s) 5, 65
Hin1II CATG 1 cut(s) 337
HindIII AAGCTT 2 cut(s) 120, 278
HinfI GANTC 3 cut(s) 159, 365, 419
HphI GGTGA 3 cut(s) 95, 366, 510
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 1 cut(s) 575
Hpy188III TCNNGA 1 cut(s) 561
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 1 cut(s) 387
HpyCH4III ACNGT 3 cut(s) 191, 245, 450
HpyCH4V TGCA 1 cut(s) 312
Hsp92II CATG 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 273
Kzo9I GATC 2 cut(s) 182, 273
LmnI GCTCC 2 cut(s) 238, 563
Lsp1109I GCAGC 1 cut(s) 551
LweI GCATC 1 cut(s) 274
MaeI CTAG 3 cut(s) 38, 402, 552
MaeIII GTNAC 2 cut(s) 83, 329
MalI GATC 2 cut(s) 184, 275
MboI GATC 2 cut(s) 182, 273
MboII GAAGA 3 cut(s) 363, 375, 381
MflI RGATCY 1 cut(s) 182
MhlI GDGCHC 2 cut(s) 480, 495
MlsI TGGCCA 1 cut(s) 65
MluCI AATT 5 cut(s) 102, 140, 251, 508, 597
MluNI TGGCCA 1 cut(s) 65
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 9 cut(s) 16, 199, 259, 403, 445, 475, 490, 505, 568
Mox20I TGGCCA 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 302
MscI TGGCCA 1 cut(s) 65
MseI TTAA 3 cut(s) 219, 254, 596
Msp20I TGGCCA 1 cut(s) 65
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
NdeII GATC 2 cut(s) 182, 273
NlaIII CATG 1 cut(s) 337
NlaIV GGNNCC 2 cut(s) 184, 341
NmuCI GTSAC 2 cut(s) 83, 329
PaqCI CACCTGC 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 365, 419
PflMI CCANNNNNTGG 1 cut(s) 193
PkrI GCNGC 1 cut(s) 541
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 4 cut(s) 12, 457, 530, 535
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 184, 341
PsuI RGATCY 1 cut(s) 182
RsaI GTAC 2 cut(s) 229, 556
RsaNI GTAC 2 cut(s) 228, 555
SaqAI TTAA 3 cut(s) 219, 254, 596
SatI GCNGC 1 cut(s) 540
Sau3AI GATC 2 cut(s) 182, 273
SchI GAGTC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 480, 495
SetI ASST 9 cut(s) 18, 97, 124, 235, 282, 379, 518, 523, 560
SfaNI GCATC 1 cut(s) 274
SmlI CTYRAG 3 cut(s) 436, 466, 496
SmoI CTYRAG 3 cut(s) 436, 466, 496
Sse9I AATT 5 cut(s) 102, 140, 251, 508, 597
SspI AATATT 1 cut(s) 302
SspMI CTAG 3 cut(s) 38, 402, 552
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 191, 245, 450
TasI AATT 5 cut(s) 102, 140, 251, 508, 597
TatI WGTACW 1 cut(s) 227
TfiI GAWTC 2 cut(s) 365, 419
Tru1I TTAA 3 cut(s) 219, 254, 596
Tru9I TTAA 3 cut(s) 219, 254, 596
TscAI CASTG 1 cut(s) 196
TseFI GTSAC 2 cut(s) 83, 329
TseI GCWGC 1 cut(s) 539
Tsp45I GTSAC 2 cut(s) 83, 329
TspDTI ATGAA 3 cut(s) 132, 369, 375
TspRI CASTG 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 193
XapI RAATTY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 322
XmnI GAANNNNTTC 1 cut(s) 302
XspI CTAG 3 cut(s) 38, 402, 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.