Rorug07G0059100

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000318
Physical Location & Seq
Reverse (-)
4255715 .. 4256551
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0059100.1

Sequence Viewer

Length: 447 bp
ATGGCGCTCCCCCTGCTACATGTAACTCAGTCAGCTAGCACTGCAGATATGAGTGAAGTACCGGCTTCTGGTGATCATGAAACTATTAAACCAGTAGTTGTGCCAAGAATGGGCACCCTGAATATGAATCAACAGGAAACCTATGAAGTTTCAAACAGGAGATTTCTTGGGAGGAAGATGATGTTTAAAAGGATTTTGGGAACGGTAAAAGAGGAAGCAGGATACTTAAATGGAGGACAATCTTCCAAGAGTACTGCTACTTCATCAGGTTCTGCGCATCCTGTCAAAAACAGTATCAATATCGATGTACGACCACAAAGATTGAGAAACATTAGTAGAGGACGTCCTCATACTCATCGCCGTGTGAAGGTGAAAATAGCTGGTAACTTTATACCTTTGAATGCTGATTATCATGTTCCGAGACCTCACCCGCCCAAGAATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

148

Amino Acids

16.43

Weight (kDa)

10.77

Isoelectric Point (pI)

53.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 346
Acc16I TGCGCA 1 cut(s) 276
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 1 cut(s) 431
AcyI GRCGYC 1 cut(s) 343
AfaI GTAC 3 cut(s) 60, 253, 309
AfiI CCNNNNNNNGG 3 cut(s) 68, 110, 367
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 2 cut(s) 153, 400
AluBI AGCT 2 cut(s) 35, 380
AluI AGCT 2 cut(s) 35, 380
Alw26I GTCTC 1 cut(s) 415
AlwNI CAGNNNCTG 1 cut(s) 272
AspLEI GCGC 2 cut(s) 7, 277
AsuHPI GGTGA 3 cut(s) 83, 382, 419
AsuNHI GCTAGC 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 113
BarI GAAGNNNNNNTAC 2 cut(s) 244, 276
BceAI ACGGC 1 cut(s) 345
BciVI GTATCC 1 cut(s) 215
BclI TGATCA 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 415
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 1 cut(s) 42
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 215
BmcAI AGTACT 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 115
BmsI GCATC 1 cut(s) 286
BmtI GCTAGC 1 cut(s) 39
Bsa29I ATCGAT 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 343
BsaI GGTCTC 1 cut(s) 415
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 110, 367
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 1 cut(s) 92
BseCI ATCGAT 1 cut(s) 303
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 3 cut(s) 68, 110, 367
BseMII CTCAG 1 cut(s) 41
BseNI ACTGG 1 cut(s) 92
BseSI GKGCMC 1 cut(s) 116
BshNI GGYRCC 1 cut(s) 113
BshVI ATCGAT 1 cut(s) 303
BsiSI CCGG 1 cut(s) 62
BslI CCNNNNNNNGG 3 cut(s) 68, 110, 367
BsmAI GTCTC 1 cut(s) 415
BsmI GAATGC 1 cut(s) 406
Bso31I GGTCTC 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 73
BspACI CCGC 1 cut(s) 431
BspCNI CTCAG 1 cut(s) 40
BspDI ATCGAT 1 cut(s) 303
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 1 cut(s) 115
BspMAI CTGCAG 1 cut(s) 46
BspOI GCTAGC 1 cut(s) 39
BspT107I GGYRCC 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 415
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 1 cut(s) 92
BssAI RCCGGY 1 cut(s) 61
BssMI GATC 1 cut(s) 73
BssNI GRCGYC 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 205, 293
BstACI GRCGYC 1 cut(s) 343
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 277
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 277
BstKTI GATC 1 cut(s) 76
BstMAI GTCTC 1 cut(s) 415
BstMBI GATC 1 cut(s) 73
BstMWI GCNNNNNNNGC 2 cut(s) 13, 41
BstNSI RCATGY 1 cut(s) 23
BstSFI CTRYAG 1 cut(s) 42
BstSLI GKGCMC 1 cut(s) 116
Bsu15I ATCGAT 1 cut(s) 303
BsuI GTATCC 1 cut(s) 215
BsuTUI ATCGAT 1 cut(s) 303
BtgZI GCGATG 1 cut(s) 341
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 37
CaiI CAGNNNCTG 1 cut(s) 272
CciI TCATGA 1 cut(s) 76
CfoI GCGC 2 cut(s) 7, 277
Cfr10I RCCGGY 1 cut(s) 61
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 3 cut(s) 59, 252, 308
CspCI CAANNNNNGTGG 2 cut(s) 303, 338
CviAII CATG 3 cut(s) 20, 77, 413
CviJI RGCY 3 cut(s) 35, 65, 380
CviKI_1 RGCY 3 cut(s) 35, 65, 380
CviQI GTAC 3 cut(s) 59, 252, 308
DdeI CTNAG 1 cut(s) 27
DpnI GATC 1 cut(s) 75
DpnII GATC 1 cut(s) 73
DraI TTTAAA 1 cut(s) 187
Eco31I GGTCTC 1 cut(s) 415
FaeI CATG 3 cut(s) 23, 80, 416
FaiI YATR 8 cut(s) 21, 50, 78, 125, 144, 351, 392, 414
FatI CATG 3 cut(s) 19, 76, 412
FauI CCCGC 1 cut(s) 438
FbaI TGATCA 1 cut(s) 73
FokI GGATG 1 cut(s) 264
FspBI CTAG 1 cut(s) 36
FspI TGCGCA 1 cut(s) 276
GlaI GCGC 2 cut(s) 6, 276
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 62
HhaI GCGC 2 cut(s) 7, 277
Hin1I GRCGYC 1 cut(s) 343
Hin1II CATG 3 cut(s) 23, 80, 416
Hin6I GCGC 2 cut(s) 5, 275
HinP1I GCGC 2 cut(s) 5, 275
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 62
HphI GGTGA 3 cut(s) 83, 382, 419
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 2 cut(s) 205, 293
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 41
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 343
Hsp92I GRCGYC 1 cut(s) 343
Hsp92II CATG 3 cut(s) 23, 80, 416
HspAI GCGC 2 cut(s) 5, 275
Ksp22I TGATCA 1 cut(s) 73
Kzo9I GATC 1 cut(s) 73
LmnI GCTCC 1 cut(s) 12
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 2 cut(s) 22, 383
MalI GATC 1 cut(s) 75
MboI GATC 1 cut(s) 73
MboII GAAGA 2 cut(s) 187, 234
MhlI GDGCHC 1 cut(s) 116
MnlI CCTC 6 cut(s) 165, 205, 227, 332, 357, 435
MseI TTAA 3 cut(s) 87, 186, 227
MslI CAYNNNNRTG 1 cut(s) 360
MspI CCGG 1 cut(s) 62
Mva1269I GAATGC 1 cut(s) 406
MwoI GCNNNNNNNGC 2 cut(s) 13, 41
NdeII GATC 1 cut(s) 73
NheI GCTAGC 1 cut(s) 35
NlaIII CATG 3 cut(s) 23, 80, 416
NlaIV GGNNCC 1 cut(s) 115
NsbI TGCGCA 1 cut(s) 276
NspI RCATGY 1 cut(s) 23
PagI TCATGA 1 cut(s) 76
PciI ACATGT 1 cut(s) 19
PctI GAATGC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 127
PscI ACATGT 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 115
PstI CTGCAG 1 cut(s) 46
PstNI CAGNNNCTG 1 cut(s) 272
RsaI GTAC 3 cut(s) 60, 253, 309
RsaNI GTAC 3 cut(s) 59, 252, 308
RseI CAYNNNNRTG 1 cut(s) 360
SaqAI TTAA 3 cut(s) 87, 186, 227
Sau3AI GATC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 253
SduI GDGCHC 1 cut(s) 116
SetI ASST 8 cut(s) 37, 143, 271, 346, 372, 382, 397, 427
SfaNI GCATC 1 cut(s) 286
SfcI CTRYAG 1 cut(s) 42
SmiMI CAYNNNNRTG 1 cut(s) 360
SsiI CCGC 1 cut(s) 431
SspMI CTAG 1 cut(s) 36
TaaI ACNGT 2 cut(s) 205, 293
TaiI ACGT 1 cut(s) 346
TaqI TCGA 1 cut(s) 303
TatI WGTACW 1 cut(s) 251
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 3 cut(s) 87, 186, 227
Tru9I TTAA 3 cut(s) 87, 186, 227
TscAI CASTG 1 cut(s) 46
TspDTI ATGAA 4 cut(s) 93, 140, 159, 252
TspRI CASTG 1 cut(s) 46
XceI RCATGY 1 cut(s) 23
XspI CTAG 1 cut(s) 36
ZraI GACGTC 1 cut(s) 344
ZrmI AGTACT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.