Rh7CG195100

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000318
Physical Location & Seq
Reverse (-)
17162419 .. 17164888
2470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG195100.1

Sequence Viewer

Length: 465 bp
ATGAGCATCACAAGAATGGTGCCAATAGTAACGATGATCCACCCATATCTTGCTCCATTACCACTTATACTTGCTGCAGAAGTAGTAGGGCTTAGGCTGGGAGCAAAGGAAGCTAGCATCACAGTTATGAAAAGCTTCTGGGGTCCGACTTCACAGTGCTTAGACACACTACAGGTGAATGGAACTGGGTTCCAAGAATGTGCAGCTCCTGCAGGCACTGTGGCATTAACAAGTGGACAGGATGTGATAAACCTAGCAACGCCAGGAAGAAAATGGTACATTTGTGGTGTTTCTAAGCACTGTGAAGTTGGACCCCAGAAGCTTTTCATAACTGTTATGCCAGCTTCCCTTGCTCCTAGTCCAAGCCCCAGTACCTCTGCAGCAACTACAAGTGCTGTTGATGGAGCAAGATATGGGTTGATCGTCGTTACTATTGCCACCATTCTGGGGATGCTCATGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

154

Amino Acids

16.0

Weight (kDa)

8.42

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 55 - 104 1.3e-08 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AclWI GGATC 1 cut(s) 31
AfaI GTAC 2 cut(s) 278, 373
AfiI CCNNNNNNNGG 1 cut(s) 447
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 5 cut(s) 113, 135, 206, 322, 344
AluI AGCT 5 cut(s) 113, 135, 206, 322, 344
AlwI GGATC 1 cut(s) 31
AlwNI CAGNNNCTG 2 cut(s) 209, 218
ApeKI GCWGC 3 cut(s) 74, 203, 380
Asp700I GAANNNNTTC 2 cut(s) 134, 323
AspS9I GGNCC 2 cut(s) 143, 311
AsuHPI GGTGA 1 cut(s) 187
AsuNHI GCTAGC 1 cut(s) 113
AvaII GGWCC 2 cut(s) 143, 311
BaeI ACNNNNGTAYC 2 cut(s) 268, 301
BanI GGYRCC 1 cut(s) 19
BbvI GCAGC 3 cut(s) 61, 215, 392
BccI CCATC 1 cut(s) 395
BciT130I CCWGG 1 cut(s) 264
BfaI CTAG 3 cut(s) 114, 254, 357
BfmI CTRYAG 4 cut(s) 75, 170, 210, 378
BisI GCNGC 3 cut(s) 75, 204, 381
BlsI GCNGC 3 cut(s) 76, 205, 382
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 143, 311
BmgT120I GGNCC 2 cut(s) 143, 311
BmiI GGNNCC 4 cut(s) 21, 144, 191, 313
BmrFI CCNGG 1 cut(s) 264
BmrI ACTGGG 2 cut(s) 195, 363
BmsI GCATC 3 cut(s) 15, 126, 441
BmtI GCTAGC 1 cut(s) 117
BmuI ACTGGG 2 cut(s) 195, 363
Bpu10I CCTNAGC 1 cut(s) 92
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse1I ACTGG 2 cut(s) 190, 369
BseBI CCWGG 1 cut(s) 264
BseGI GGATG 2 cut(s) 247, 456
BseLI CCNNNNNNNGG 1 cut(s) 447
BseNI ACTGG 2 cut(s) 190, 369
BseXI GCAGC 3 cut(s) 61, 215, 392
BseYI CCCAGC 1 cut(s) 97
BsgI GTGCAG 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 447
Bsp143I GATC 2 cut(s) 36, 420
BspLI GGNNCC 4 cut(s) 21, 144, 191, 313
BspMAI CTGCAG 3 cut(s) 79, 214, 382
BspOI GCTAGC 1 cut(s) 117
BspPI GGATC 1 cut(s) 31
BspT107I GGYRCC 1 cut(s) 19
BsrI ACTGG 2 cut(s) 190, 369
BssMI GATC 2 cut(s) 36, 420
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 5 cut(s) 124, 156, 220, 302, 334
BstAPI GCANNNNNTGC 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 115, 214, 342
BstDEI CTNAG 3 cut(s) 92, 160, 294
BstF5I GGATG 2 cut(s) 247, 456
BstKTI GATC 2 cut(s) 39, 423
BstMBI GATC 2 cut(s) 36, 420
BstMWI GCNNNNNNNGC 3 cut(s) 110, 209, 350
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 4 cut(s) 75, 170, 210, 378
BstV1I GCAGC 3 cut(s) 61, 215, 392
BstXI CCANNNNNNTGG 1 cut(s) 445
BtsCI GGATG 2 cut(s) 247, 456
BtsIMutI CAGTG 3 cut(s) 161, 216, 298
Cac8I GCNNGC 3 cut(s) 115, 214, 342
CaiI CAGNNNCTG 2 cut(s) 209, 218
Cfr13I GGNCC 2 cut(s) 143, 311
Csp6I GTAC 2 cut(s) 277, 372
CviAII CATG 1 cut(s) 457
CviJI RGCY 9 cut(s) 91, 97, 113, 135, 206, 322, 344, 366, 461
CviKI_1 RGCY 9 cut(s) 91, 97, 113, 135, 206, 322, 344, 366, 461
CviQI GTAC 2 cut(s) 277, 372
DdeI CTNAG 3 cut(s) 92, 160, 294
DpnI GATC 2 cut(s) 38, 422
DpnII GATC 2 cut(s) 36, 420
Eco47I GGWCC 2 cut(s) 143, 311
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 1 cut(s) 460
FaiI YATR 7 cut(s) 46, 68, 128, 329, 338, 414, 458
FatI CATG 1 cut(s) 456
Fnu4HI GCNGC 3 cut(s) 75, 204, 381
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 3 cut(s) 75, 204, 381
FspBI CTAG 3 cut(s) 114, 254, 357
GluI GCNGC 3 cut(s) 75, 204, 381
GsaI CCCAGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 460
HindIII AAGCTT 2 cut(s) 133, 320
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 147
Hpy8I GTNNAC 1 cut(s) 236
Hpy99I CGWCG 1 cut(s) 428
HpyCH4III ACNGT 5 cut(s) 124, 156, 220, 302, 334
HpyCH4V TGCA 4 cut(s) 77, 203, 212, 380
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 209, 350
HpyF3I CTNAG 3 cut(s) 92, 160, 294
Hsp92II CATG 1 cut(s) 460
Kzo9I GATC 2 cut(s) 36, 420
LmnI GCTCC 5 cut(s) 58, 101, 211, 358, 404
Lsp1109I GCAGC 3 cut(s) 61, 215, 392
LweI GCATC 3 cut(s) 15, 126, 441
MaeI CTAG 3 cut(s) 114, 254, 357
MaeIII GTNAC 2 cut(s) 28, 427
MalI GATC 2 cut(s) 38, 422
MboI GATC 2 cut(s) 36, 420
MboII GAAGA 1 cut(s) 279
MmeI TCCRAC 2 cut(s) 170, 289
MnlI CCTC 1 cut(s) 385
MroXI GAANNNNTTC 2 cut(s) 134, 323
MseI TTAA 2 cut(s) 227, 463
MslI CAYNNNNRTG 2 cut(s) 14, 125
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 110, 209, 350
NdeII GATC 2 cut(s) 36, 420
NheI GCTAGC 1 cut(s) 113
NlaIII CATG 1 cut(s) 460
NlaIV GGNNCC 4 cut(s) 21, 144, 191, 313
PdmI GAANNNNTTC 2 cut(s) 134, 323
PkrI GCNGC 3 cut(s) 76, 205, 382
Psp6I CCWGG 1 cut(s) 262
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 4 cut(s) 21, 144, 191, 313
PspPI GGNCC 2 cut(s) 143, 311
PstI CTGCAG 3 cut(s) 79, 214, 382
PstNI CAGNNNCTG 2 cut(s) 209, 218
RsaI GTAC 2 cut(s) 278, 373
RsaNI GTAC 2 cut(s) 277, 372
RseI CAYNNNNRTG 2 cut(s) 14, 125
SaqAI TTAA 2 cut(s) 227, 463
SatI GCNGC 3 cut(s) 75, 204, 381
Sau3AI GATC 2 cut(s) 36, 420
Sau96I GGNCC 2 cut(s) 143, 311
SbfI CCTGCAGG 1 cut(s) 214
ScrFI CCNGG 1 cut(s) 264
SdaI CCTGCAGG 1 cut(s) 214
SetI ASST 8 cut(s) 115, 137, 177, 208, 255, 324, 346, 377
SfaNI GCATC 3 cut(s) 15, 126, 441
SfcI CTRYAG 4 cut(s) 75, 170, 210, 378
SinI GGWCC 2 cut(s) 143, 311
SmiMI CAYNNNNRTG 2 cut(s) 14, 125
Sse8387I CCTGCAGG 1 cut(s) 214
SspMI CTAG 3 cut(s) 114, 254, 357
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 5 cut(s) 124, 156, 220, 302, 334
Tru1I TTAA 2 cut(s) 227, 463
Tru9I TTAA 2 cut(s) 227, 463
TscAI CASTG 3 cut(s) 161, 223, 305
TseI GCWGC 3 cut(s) 74, 203, 380
TspDTI ATGAA 2 cut(s) 143, 316
TspRI CASTG 3 cut(s) 161, 223, 305
VpaK11BI GGWCC 2 cut(s) 143, 311
XcmI CCANNNNNNNNNTGG 1 cut(s) 270
XmnI GAANNNNTTC 2 cut(s) 134, 323
XspI CTAG 3 cut(s) 114, 254, 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.