Rh7BG187900

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000318
Physical Location & Seq
Forward (+)
15150802 .. 15151401
600 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG187900.1

Sequence Viewer

Length: 492 bp
ATGGCCTCTATTTCCCAGCTCTTCGTAATTGTTGCGATGCTAGCAATTTTTACTCCTACAATTTTCGCAACGGATTTTATTGTCGGTGACGACAAAGGTTGGACCATTAATGTCGACTACCAAGCTTGGGCTCAGGGAAAGCAGTTCTACGTTGGCGATAACCTTGTTTTTAACTACCCAGTAGGTGTTCACAATGTGCTGAAGGTGAATGGAACTGGTTTCCAAGAATGTGCAGCTCCTGCAGGCACTGTAGCATTAACAGGTGGGAAAGACGTGATAAACTTAGCAACCCCAGGGAGGAAATGGTACATCTGTGGTGTGTCTAAACACTGTGAAGTCGGACCCCAGAAGCTTTTCATAACTGTGACGCCAGCTTCCTTTGCTCCCAGCCCAAGCCCTACTACCTCTGCAGCAAGTATAAGGGGTAATGGAGCAAGATATGGGTGGATCATCGTTACTGTTGGCACCATTCTTGGGATGCTCATGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

163

Amino Acids

17.29

Weight (kDa)

8.48

Isoelectric Point (pI)

20.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 34 - 114 3.9e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 464
AccI GTMKAC 1 cut(s) 114
AclWI GGATC 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 368
AdeI CACNNNGTG 1 cut(s) 196
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 3 cut(s) 127, 297, 474
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 5 cut(s) 19, 125, 236, 352, 374
AluI AGCT 5 cut(s) 19, 125, 236, 352, 374
AlwI GGATC 1 cut(s) 455
AlwNI CAGNNNCTG 2 cut(s) 239, 248
AoxI GGCC 2 cut(s) 3, 486
ApeKI GCWGC 2 cut(s) 233, 410
AseI ATTAAT 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 353
AspS9I GGNCC 2 cut(s) 102, 341
AsuHPI GGTGA 2 cut(s) 98, 217
AsuNHI GCTAGC 1 cut(s) 40
AvaII GGWCC 2 cut(s) 102, 341
BaeI ACNNNNGTAYC 2 cut(s) 298, 331
BanI GGYRCC 1 cut(s) 464
BanII GRGCYC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 245, 422
BciT130I CCWGG 1 cut(s) 294
BfaI CTAG 1 cut(s) 41
BfmI CTRYAG 3 cut(s) 240, 249, 408
BisI GCNGC 2 cut(s) 234, 411
BlsI GCNGC 2 cut(s) 235, 412
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 2 cut(s) 102, 341
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 102, 341
BmiI GGNNCC 2 cut(s) 343, 466
BmrFI CCNGG 1 cut(s) 294
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 2 cut(s) 27, 468
BmtI GCTAGC 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 173
Bpu10I CCTNAGC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 368
BsaJI CCNNGG 2 cut(s) 292, 293
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 297, 474
Bse1I ACTGG 2 cut(s) 179, 220
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 2 cut(s) 292, 293
BseGI GGATG 1 cut(s) 483
BseLI CCNNNNNNNGG 3 cut(s) 127, 297, 474
BseMII CTCAG 1 cut(s) 146
BseNI ACTGG 2 cut(s) 179, 220
BseXI GCAGC 2 cut(s) 245, 422
BseYI CCCAGC 2 cut(s) 15, 386
BsgI GTGCAG 1 cut(s) 252
BshFI GGCC 2 cut(s) 5, 488
BshNI GGYRCC 1 cut(s) 464
BslI CCNNNNNNNGG 3 cut(s) 127, 297, 474
BsnI GGCC 2 cut(s) 5, 488
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 1 cut(s) 447
BspANI GGCC 2 cut(s) 5, 488
BspCNI CTCAG 1 cut(s) 145
BspLI GGNNCC 2 cut(s) 343, 466
BspMAI CTGCAG 2 cut(s) 244, 412
BspOI GCTAGC 1 cut(s) 44
BspPI GGATC 1 cut(s) 455
BspQI GCTCTTC 1 cut(s) 26
BspT107I GGYRCC 1 cut(s) 464
BsrI ACTGG 2 cut(s) 179, 220
BssECI CCNNGG 2 cut(s) 292, 293
BssMI GATC 1 cut(s) 447
BssNI GRCGYC 1 cut(s) 368
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 4 cut(s) 250, 332, 364, 460
Bst6I CTCTTC 1 cut(s) 26
BstACI GRCGYC 1 cut(s) 368
BstAPI GCANNNNNTGC 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 42, 244, 372
BstDEI CTNAG 2 cut(s) 132, 283
BstF5I GGATG 1 cut(s) 483
BstKTI GATC 1 cut(s) 450
BstMBI GATC 1 cut(s) 447
BstMWI GCNNNNNNNGC 3 cut(s) 41, 239, 380
BstNI CCWGG 1 cut(s) 294
BstSCI CCNGG 1 cut(s) 292
BstSFI CTRYAG 3 cut(s) 240, 249, 408
BstV1I GCAGC 2 cut(s) 245, 422
BsuRI GGCC 2 cut(s) 5, 488
BtgZI GCGATG 1 cut(s) 50
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 1 cut(s) 483
BtsIMutI CAGTG 2 cut(s) 246, 328
Cac8I GCNNGC 3 cut(s) 42, 244, 372
CaiI CAGNNNCTG 2 cut(s) 239, 248
Cfr13I GGNCC 2 cut(s) 102, 341
CseI GACGC 1 cut(s) 376
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 484
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 2 cut(s) 132, 283
DpnI GATC 1 cut(s) 449
DpnII GATC 1 cut(s) 447
DraIII CACNNNGTG 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 133
Eco47I GGWCC 2 cut(s) 102, 341
Eco57I CTGAAG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 292
EcoT38I GRGCYC 1 cut(s) 133
FaeI CATG 1 cut(s) 487
FaiI YATR 4 cut(s) 359, 419, 441, 485
FatI CATG 1 cut(s) 483
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 2 cut(s) 234, 411
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 2 cut(s) 234, 411
FspBI CTAG 1 cut(s) 41
GluI GCNGC 2 cut(s) 234, 411
GsaI CCCAGC 2 cut(s) 19, 390
HaeIII GGCC 2 cut(s) 5, 488
HgaI GACGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 368
Hin1II CATG 1 cut(s) 487
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HindIII AAGCTT 2 cut(s) 123, 350
HphI GGTGA 2 cut(s) 98, 217
Hpy166II GTNNAC 2 cut(s) 115, 190
Hpy188I TCNGA 1 cut(s) 341
Hpy8I GTNNAC 2 cut(s) 115, 190
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 4 cut(s) 250, 332, 364, 460
HpyCH4IV ACGT 2 cut(s) 150, 273
HpyCH4V TGCA 3 cut(s) 233, 242, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 239, 380
HpyF3I CTNAG 2 cut(s) 132, 283
HpySE526I ACGT 2 cut(s) 150, 273
Hsp92I GRCGYC 1 cut(s) 368
Hsp92II CATG 1 cut(s) 487
Kzo9I GATC 1 cut(s) 447
LguI GCTCTTC 1 cut(s) 26
LmnI GCTCC 3 cut(s) 241, 388, 431
Lsp1109I GCAGC 2 cut(s) 245, 422
LweI GCATC 2 cut(s) 27, 468
MaeI CTAG 1 cut(s) 41
MaeII ACGT 2 cut(s) 150, 273
MaeIII GTNAC 3 cut(s) 86, 364, 454
MalI GATC 1 cut(s) 449
MboI GATC 1 cut(s) 447
MboII GAAGA 1 cut(s) 13
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 3 cut(s) 27, 45, 60
MmeI TCCRAC 2 cut(s) 80, 319
MnlI CCTC 3 cut(s) 16, 291, 415
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 3 cut(s) 108, 171, 257
MslI CAYNNNNRTG 1 cut(s) 362
MspR9I CCNGG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 3 cut(s) 41, 239, 380
NdeII GATC 1 cut(s) 447
NheI GCTAGC 1 cut(s) 40
NlaIII CATG 1 cut(s) 487
NlaIV GGNNCC 2 cut(s) 343, 466
NmuCI GTSAC 2 cut(s) 86, 364
PasI CCCWGGG 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 26
PdmI GAANNNNTTC 1 cut(s) 353
PkrI GCNGC 2 cut(s) 235, 412
PshBI ATTAAT 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 292
PspFI CCCAGC 2 cut(s) 15, 386
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 2 cut(s) 343, 466
PspPI GGNCC 2 cut(s) 102, 341
PstI CTGCAG 2 cut(s) 244, 412
PstNI CAGNNNCTG 2 cut(s) 239, 248
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
RseI CAYNNNNRTG 1 cut(s) 362
SalI GTCGAC 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 26
SaqAI TTAA 3 cut(s) 108, 171, 257
SatI GCNGC 2 cut(s) 234, 411
Sau3AI GATC 1 cut(s) 447
Sau96I GGNCC 2 cut(s) 102, 341
SbfI CCTGCAGG 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 294
SdaI CCTGCAGG 1 cut(s) 244
SduI GDGCHC 1 cut(s) 133
SfaNI GCATC 2 cut(s) 27, 468
SfcI CTRYAG 3 cut(s) 240, 249, 408
SinI GGWCC 2 cut(s) 102, 341
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse8387I CCTGCAGG 1 cut(s) 244
Sse9I AATT 3 cut(s) 27, 45, 60
SspMI CTAG 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 4 cut(s) 250, 332, 364, 460
TaiI ACGT 2 cut(s) 153, 276
TaqI TCGA 1 cut(s) 114
TasI AATT 3 cut(s) 27, 45, 60
Tru1I TTAA 3 cut(s) 108, 171, 257
Tru9I TTAA 3 cut(s) 108, 171, 257
TscAI CASTG 2 cut(s) 253, 335
TseFI GTSAC 2 cut(s) 86, 364
TseI GCWGC 2 cut(s) 233, 410
Tsp45I GTSAC 2 cut(s) 86, 364
TspDTI ATGAA 1 cut(s) 346
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 2 cut(s) 253, 335
VpaK11BI GGWCC 2 cut(s) 102, 341
VspI ATTAAT 1 cut(s) 108
XcmI CCANNNNNNNNNTGG 1 cut(s) 300
XmiI GTMKAC 1 cut(s) 114
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.