FvH4_5g01020

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000318
Physical Location & Seq
Reverse (-)
599173 .. 599791
619 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g01020.t1

Sequence Viewer

Length: 489 bp
ATGTCCTCCTCCCAGCTCTTCATAGTTCTTGCCATCCTTGCCATTGTCTCCCCTACCATTTCGGCAACAGATTATATTGTTGGCGATGACAAGGGTTGGACCATTAATGTTGATTACCAAGCTTGGGCTCAGGGAAAGCTCTTCTATGTTGGTGATAACCTCGTATTTAACTACCCAGAAGGAGCTCACAGTGTGCTTAAGGTGAATGGAACTGGGTTTCAAGAATGTGCAGCTCCTGCAGGAACTGTGGCATTAACAAGTGGACAGGATGTGATAAACCTAGCAACGCCAGGAAGAAAATGGTACATTTGCGGTGTTGCTAAGCACTGTGAAGTCGGACCCCAGAAGCTTTTCATTACTGTTATGCCAGCTGCTTCCTATGCTCCTAGTCCAAGCCCCACTACGTCTGCAGCAACTACAAGTGCTGTTAATGGAGCAAGATTTGGGTGGACGATCATTGTTATTGGCATTCTTGGGATGCTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

163

Amino Acids

17.01

Weight (kDa)

6.02

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 8.2e-25 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 312
AdeI CACNNNGTG 1 cut(s) 193
AfaI GTAC 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 124
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 221
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 7 cut(s) 16, 122, 139, 185, 233, 349, 371
AluI AGCT 7 cut(s) 16, 122, 139, 185, 233, 349, 371
Alw21I GWGCWC 1 cut(s) 187
Alw26I GTCTC 1 cut(s) 52
AlwNI CAGNNNCTG 2 cut(s) 236, 245
ApeKI GCWGC 3 cut(s) 230, 371, 410
AseI ATTAAT 1 cut(s) 105
Asp700I GAANNNNTTC 1 cut(s) 350
AspS9I GGNCC 2 cut(s) 99, 338
AsuHPI GGTGA 2 cut(s) 164, 214
AvaII GGWCC 2 cut(s) 99, 338
BanII GRGCYC 2 cut(s) 130, 187
Bbv12I GWGCWC 1 cut(s) 187
BbvI GCAGC 3 cut(s) 242, 358, 422
BccI CCATC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 52
BfaI CTAG 3 cut(s) 281, 387, 487
BfmI CTRYAG 2 cut(s) 237, 408
BfrI CTTAAG 1 cut(s) 197
BisI GCNGC 3 cut(s) 231, 372, 411
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 3 cut(s) 232, 373, 412
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 2 cut(s) 99, 338
BmgT120I GGNCC 2 cut(s) 99, 338
BmiI GGNNCC 1 cut(s) 340
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 468
BmuI ACTGGG 1 cut(s) 222
Bpu10I CCTNAGC 1 cut(s) 129
Bpu1102I GCTNAGC 1 cut(s) 321
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 217
BseBI CCWGG 1 cut(s) 291
BseGI GGATG 3 cut(s) 33, 274, 483
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 1 cut(s) 217
BseXI GCAGC 3 cut(s) 242, 358, 422
BseYI CCCAGC 1 cut(s) 12
BsgI GTGCAG 1 cut(s) 249
BsiHKAI GWGCWC 1 cut(s) 187
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 52
BsmI GAATGC 1 cut(s) 468
Bsp1286I GDGCHC 2 cut(s) 130, 187
Bsp143I GATC 1 cut(s) 453
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 340
BspMAI CTGCAG 2 cut(s) 241, 412
BspQI GCTCTTC 2 cut(s) 23, 146
BspTI CTTAAG 1 cut(s) 197
BsrI ACTGG 1 cut(s) 217
BssMI GATC 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 4 cut(s) 191, 247, 329, 361
Bst6I CTCTTC 2 cut(s) 23, 146
BstAFI CTTAAG 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 236
BstC8I GCNNGC 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 129, 321
BstF5I GGATG 3 cut(s) 33, 274, 483
BstKTI GATC 1 cut(s) 456
BstMAI GTCTC 1 cut(s) 52
BstMBI GATC 1 cut(s) 453
BstMWI GCNNNNNNNGC 3 cut(s) 38, 236, 380
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSFI CTRYAG 2 cut(s) 237, 408
BstV1I GCAGC 3 cut(s) 242, 358, 422
BtgZI GCGATG 1 cut(s) 99
BtsCI GGATG 3 cut(s) 33, 274, 483
BtsIMutI CAGTG 2 cut(s) 196, 325
Cac8I GCNNGC 1 cut(s) 369
CaiI CAGNNNCTG 2 cut(s) 236, 245
Cfr13I GGNCC 2 cut(s) 99, 338
Csp6I GTAC 1 cut(s) 304
CviJI RGCY 9 cut(s) 16, 122, 128, 139, 185, 233, 349, 371, 396
CviKI_1 RGCY 9 cut(s) 16, 122, 128, 139, 185, 233, 349, 371, 396
CviQI GTAC 1 cut(s) 304
DdeI CTNAG 2 cut(s) 129, 321
DpnI GATC 1 cut(s) 455
DpnII GATC 1 cut(s) 453
DraIII CACNNNGTG 1 cut(s) 193
Eam1104I CTCTTC 2 cut(s) 23, 146
EarI CTCTTC 2 cut(s) 23, 146
Ecl136II GAGCTC 1 cut(s) 185
Eco24I GRGCYC 2 cut(s) 130, 187
Eco47I GGWCC 2 cut(s) 99, 338
Eco53kI GAGCTC 1 cut(s) 185
EcoICRI GAGCTC 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 289
EcoT38I GRGCYC 2 cut(s) 130, 187
FaiI YATR 5 cut(s) 23, 75, 147, 365, 381
Fnu4HI GCNGC 3 cut(s) 231, 372, 411
FokI GGATG 2 cut(s) 20, 281
FriOI GRGCYC 2 cut(s) 130, 187
Fsp4HI GCNGC 3 cut(s) 231, 372, 411
FspBI CTAG 3 cut(s) 281, 387, 487
GluI GCNGC 3 cut(s) 231, 372, 411
GsaI CCCAGC 1 cut(s) 16
HindIII AAGCTT 2 cut(s) 120, 347
HphI GGTGA 2 cut(s) 164, 214
Hpy166II GTNNAC 2 cut(s) 263, 450
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 2 cut(s) 263, 450
HpyAV CCTTC 1 cut(s) 173
HpyCH4III ACNGT 4 cut(s) 191, 247, 329, 361
HpyCH4IV ACGT 1 cut(s) 404
HpyCH4V TGCA 3 cut(s) 230, 239, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 236, 380
HpyF3I CTNAG 2 cut(s) 129, 321
HpySE526I ACGT 1 cut(s) 404
Kzo9I GATC 1 cut(s) 453
LguI GCTCTTC 2 cut(s) 23, 146
LmnI GCTCC 4 cut(s) 182, 238, 388, 434
Lsp1109I GCAGC 3 cut(s) 242, 358, 422
LweI GCATC 1 cut(s) 468
MaeI CTAG 3 cut(s) 281, 387, 487
MaeII ACGT 1 cut(s) 404
MalI GATC 1 cut(s) 455
MboI GATC 1 cut(s) 453
MboII GAAGA 3 cut(s) 10, 133, 306
MhlI GDGCHC 2 cut(s) 130, 187
MmeI TCCRAC 2 cut(s) 77, 316
MnlI CCTC 3 cut(s) 16, 19, 170
MroXI GAANNNNTTC 1 cut(s) 350
MseI TTAA 5 cut(s) 105, 168, 198, 254, 429
MspA1I CMGCKG 1 cut(s) 371
MspCI CTTAAG 1 cut(s) 197
MspR9I CCNGG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 468
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 38, 236, 380
NdeII GATC 1 cut(s) 453
NlaIV GGNNCC 1 cut(s) 340
PciSI GCTCTTC 2 cut(s) 23, 146
PctI GAATGC 1 cut(s) 468
PdmI GAANNNNTTC 1 cut(s) 350
PkrI GCNGC 3 cut(s) 232, 373, 412
PshBI ATTAAT 1 cut(s) 105
Psp124BI GAGCTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 12
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 2 cut(s) 99, 338
PstI CTGCAG 2 cut(s) 241, 412
PstNI CAGNNNCTG 2 cut(s) 236, 245
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
SacI GAGCTC 1 cut(s) 187
SapI GCTCTTC 2 cut(s) 23, 146
SaqAI TTAA 5 cut(s) 105, 168, 198, 254, 429
SatI GCNGC 3 cut(s) 231, 372, 411
Sau3AI GATC 1 cut(s) 453
Sau96I GGNCC 2 cut(s) 99, 338
SbfI CCTGCAGG 1 cut(s) 241
ScrFI CCNGG 1 cut(s) 291
SdaI CCTGCAGG 1 cut(s) 241
SduI GDGCHC 2 cut(s) 130, 187
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 2 cut(s) 237, 408
SinI GGWCC 2 cut(s) 99, 338
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse8387I CCTGCAGG 1 cut(s) 241
SsiI CCGC 1 cut(s) 312
SspMI CTAG 3 cut(s) 281, 387, 487
SstI GAGCTC 1 cut(s) 187
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 4 cut(s) 191, 247, 329, 361
TaiI ACGT 1 cut(s) 407
Tru1I TTAA 5 cut(s) 105, 168, 198, 254, 429
Tru9I TTAA 5 cut(s) 105, 168, 198, 254, 429
TscAI CASTG 2 cut(s) 196, 332
TseI GCWGC 3 cut(s) 230, 371, 410
TspDTI ATGAA 2 cut(s) 10, 343
TspRI CASTG 2 cut(s) 196, 332
Vha464I CTTAAG 1 cut(s) 197
VpaK11BI GGWCC 2 cut(s) 99, 338
VspI ATTAAT 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 3 cut(s) 281, 387, 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.