RchiOBHm_Chr7g0200321

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000318
Physical Location & Seq
Reverse (-)
18132113 .. 18135686
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17929

Sequence Viewer

Length: 882 bp
ATGGCCTCTTCCCAGTTCTTCATAATCCTTGCCATTCTAGCAATTGTTACCCCTTCAATTCTGGCTACAGATTTTATTGTCGGTGATGACAAAGGTTGGACCAATACTGTTGACTACCAAGCTTGGGCTCAGGGAAAGCTCTTCTATGTTGGTGATAACCTCGTATTTAACTACCCAGAAGGAGCTCACAATGTGCTTAAGGTGAATGGAACTGGGTTCCAAGAATGTGCAGCTCCTGCAGGCACTGTGGCATTAACAAGTGGACAGGATGTGATAAACCTAGCAACGCCAGGAAGAAAATGGTACATTTGTGGTGTTTCTAAGCACTGTGAAGTTGGACCCCAGAAGCTTTTCATAACTGTTATGCCAGCTTCCTTTGCTCCTAGTCCAAGCCCCAGTACCTCTGCAGCAACTACAAGTGCTGTTAATGGAGCAAGATATGGGTTGATCCTTTTCATTATCCTGGCCACTCTAGCTATTGCAGCCCCTTTAACCTTGGCAACAGATTATGTTGTTGGTGATGACAAAGGTTGGACTACTAACTTCGATTACCAAGCTTGGGCTCGGGGAAAGATGTTCGTCGTTGGCGACAACCTTGTTTTTCACTATCCAGAAGGAGTGCACAATGTGCTCAAAGTGAACGGCACCGGGTTTCAACAATGTGCAGCTCCTGCCAGCACTGCGCCATTAACAAGTGGTCATGATGTAATAACCCTGGCAACCCCAGGGAGGAAGTGGTACATTTGTGGAGCTCCTAACCACTGTGCTGTTGGGGGACAGAAGCTTGCCATCACTGTGATGCCATCATCGTTTGCTCCTAGCCCAAGCCCTCTCTCTGCAAAATACGTCGCTTCTAGCCCTAGCCCCACCTCTGGATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

293

Amino Acids

30.75

Weight (kDa)

6.98

Isoelectric Point (pI)

36.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 113 4.4e-24 Plastocyanin-like domain
Cu_bind_like PF02298 178 - 258 1.3e-24 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 644
AclWI GGATC 1 cut(s) 442
AcoI YGGCCR 1 cut(s) 465
AdeI CACNNNGTG 2 cut(s) 193, 628
AfaI GTAC 3 cut(s) 305, 400, 740
AfiI CCNNNNNNNGG 4 cut(s) 124, 559, 729, 872
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 57, 656
AjnI CCWGG 4 cut(s) 289, 462, 714, 724
Alw21I GWGCWC 4 cut(s) 187, 624, 633, 754
Alw44I GTGCAC 1 cut(s) 620
AlwI GGATC 1 cut(s) 442
AlwNI CAGNNNCTG 3 cut(s) 236, 245, 671
Ama87I CYCGRG 1 cut(s) 564
AoxI GGCC 2 cut(s) 3, 465
ApaLI GTGCAC 1 cut(s) 620
ApeKI GCWGC 4 cut(s) 230, 407, 482, 665
Asp700I GAANNNNTTC 1 cut(s) 350
AspLEI GCGC 1 cut(s) 685
AspS9I GGNCC 2 cut(s) 99, 338
AsuC2I CCSGG 1 cut(s) 649
AsuHPI GGTGA 4 cut(s) 95, 164, 214, 530
AvaI CYCGRG 1 cut(s) 564
AvaII GGWCC 2 cut(s) 99, 338
BaeGI GKGCMC 1 cut(s) 624
BaeI ACNNNNGTAYC 4 cut(s) 295, 328, 730, 763
BalI TGGCCA 1 cut(s) 467
BanI GGYRCC 1 cut(s) 644
BanII GRGCYC 4 cut(s) 130, 187, 565, 754
Bbv12I GWGCWC 4 cut(s) 187, 624, 633, 754
BbvI GCAGC 4 cut(s) 242, 419, 494, 677
BccI CCATC 2 cut(s) 797, 811
BceAI ACGGC 1 cut(s) 658
BciT130I CCWGG 4 cut(s) 291, 464, 716, 726
BcnI CCSGG 1 cut(s) 649
BfaI CTAG 7 cut(s) 38, 281, 384, 473, 819, 855, 861
BfmI CTRYAG 3 cut(s) 66, 237, 405
BfrI CTTAAG 1 cut(s) 197
BisI GCNGC 4 cut(s) 231, 408, 483, 666
BlsI GCNGC 4 cut(s) 232, 409, 484, 667
Bme1390I CCNGG 5 cut(s) 291, 464, 649, 716, 726
Bme18I GGWCC 2 cut(s) 99, 338
BmeT110I CYCGRG 1 cut(s) 564
BmgT120I GGNCC 2 cut(s) 99, 338
BmiI GGNNCC 3 cut(s) 218, 340, 646
BmrFI CCNGG 5 cut(s) 291, 464, 649, 716, 726
BmrI ACTGGG 3 cut(s) 7, 222, 390
BmsI GCATC 1 cut(s) 789
BmuI ACTGGG 3 cut(s) 7, 222, 390
Bpu10I CCTNAGC 1 cut(s) 129
BpuMI CCSGG 1 cut(s) 649
BsaJI CCNNGG 4 cut(s) 495, 714, 724, 725
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 559, 729, 872
Bse1I ACTGG 3 cut(s) 13, 217, 396
BseBI CCWGG 4 cut(s) 291, 464, 716, 726
BseDI CCNNGG 4 cut(s) 495, 714, 724, 725
BseGI GGATG 2 cut(s) 274, 881
BseLI CCNNNNNNNGG 4 cut(s) 124, 559, 729, 872
BseMII CTCAG 1 cut(s) 143
BseNI ACTGG 3 cut(s) 13, 217, 396
BseSI GKGCMC 1 cut(s) 624
BseXI GCAGC 4 cut(s) 242, 419, 494, 677
BsgI GTGCAG 2 cut(s) 249, 684
BshFI GGCC 2 cut(s) 5, 467
BshNI GGYRCC 1 cut(s) 644
BsiHKAI GWGCWC 4 cut(s) 187, 624, 633, 754
BsiHKCI CYCGRG 1 cut(s) 564
BsiSI CCGG 1 cut(s) 648
BslFI GGGAC 1 cut(s) 789
BslI CCNNNNNNNGG 4 cut(s) 124, 559, 729, 872
BsmFI GGGAC 1 cut(s) 789
BsnI GGCC 2 cut(s) 5, 467
BsoBI CYCGRG 1 cut(s) 564
Bsp1286I GDGCHC 6 cut(s) 130, 187, 565, 624, 633, 754
Bsp143I GATC 1 cut(s) 447
BspANI GGCC 2 cut(s) 5, 467
BspCNI CTCAG 1 cut(s) 142
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 3 cut(s) 218, 340, 646
BspMAI CTGCAG 2 cut(s) 241, 409
BspPI GGATC 1 cut(s) 442
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 644
BspTI CTTAAG 1 cut(s) 197
BsrI ACTGG 3 cut(s) 13, 217, 396
BssECI CCNNGG 4 cut(s) 495, 714, 724, 725
BssMI GATC 1 cut(s) 447
BssT1I CCWWGG 1 cut(s) 495
Bst2UI CCWGG 4 cut(s) 291, 464, 716, 726
Bst4CI ACNGT 6 cut(s) 109, 247, 329, 361, 764, 796
Bst6I CTCTTC 2 cut(s) 13, 146
BstAFI CTTAAG 1 cut(s) 197
BstAPI GCANNNNNTGC 3 cut(s) 236, 628, 671
BstC8I GCNNGC 4 cut(s) 241, 369, 676, 786
BstDEI CTNAG 2 cut(s) 129, 321
BstF5I GGATG 2 cut(s) 274, 881
BstHHI GCGC 1 cut(s) 685
BstKTI GATC 1 cut(s) 450
BstMBI GATC 1 cut(s) 447
BstMWI GCNNNNNNNGC 8 cut(s) 38, 236, 377, 473, 482, 628, 671, 680
BstNI CCWGG 4 cut(s) 291, 464, 716, 726
BstSCI CCNGG 5 cut(s) 289, 462, 647, 714, 724
BstSFI CTRYAG 3 cut(s) 66, 237, 405
BstSLI GKGCMC 1 cut(s) 624
BstV1I GCAGC 4 cut(s) 242, 419, 494, 677
BsuRI GGCC 2 cut(s) 5, 467
BtsCI GGATG 2 cut(s) 274, 881
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 5 cut(s) 243, 325, 678, 760, 792
Cac8I GCNNGC 4 cut(s) 241, 369, 676, 786
CaiI CAGNNNCTG 3 cut(s) 236, 245, 671
CciI TCATGA 1 cut(s) 700
CfoI GCGC 1 cut(s) 685
Cfr13I GGNCC 2 cut(s) 99, 338
Csp6I GTAC 3 cut(s) 304, 399, 739
CviAII CATG 1 cut(s) 701
CviQI GTAC 3 cut(s) 304, 399, 739
DdeI CTNAG 2 cut(s) 129, 321
DpnI GATC 1 cut(s) 449
DpnII GATC 1 cut(s) 447
DraIII CACNNNGTG 2 cut(s) 193, 628
EaeI YGGCCR 1 cut(s) 465
Eam1104I CTCTTC 2 cut(s) 13, 146
EarI CTCTTC 2 cut(s) 13, 146
Ecl136II GAGCTC 2 cut(s) 185, 752
Eco130I CCWWGG 1 cut(s) 495
Eco24I GRGCYC 4 cut(s) 130, 187, 565, 754
Eco47I GGWCC 2 cut(s) 99, 338
Eco53kI GAGCTC 2 cut(s) 185, 752
Eco88I CYCGRG 1 cut(s) 564
EcoICRI GAGCTC 2 cut(s) 185, 752
EcoRII CCWGG 4 cut(s) 289, 462, 714, 724
EcoT14I CCWWGG 1 cut(s) 495
EcoT38I GRGCYC 4 cut(s) 130, 187, 565, 754
ErhI CCWWGG 1 cut(s) 495
FaeI CATG 1 cut(s) 704
FaiI YATR 7 cut(s) 23, 147, 356, 365, 441, 510, 702
FaqI GGGAC 1 cut(s) 789
FatI CATG 1 cut(s) 700
Fnu4HI GCNGC 4 cut(s) 231, 408, 483, 666
FokI GGATG 1 cut(s) 281
FriOI GRGCYC 4 cut(s) 130, 187, 565, 754
Fsp4HI GCNGC 4 cut(s) 231, 408, 483, 666
FspBI CTAG 7 cut(s) 38, 281, 384, 473, 819, 855, 861
GlaI GCGC 1 cut(s) 684
GluI GCNGC 4 cut(s) 231, 408, 483, 666
HaeIII GGCC 2 cut(s) 5, 467
HapII CCGG 1 cut(s) 648
HhaI GCGC 1 cut(s) 685
Hin1II CATG 1 cut(s) 704
Hin6I GCGC 1 cut(s) 683
HinP1I GCGC 1 cut(s) 683
HincII GTYRAC 1 cut(s) 112
HindII GTYRAC 1 cut(s) 112
HindIII AAGCTT 4 cut(s) 120, 347, 555, 782
HpaII CCGG 1 cut(s) 648
HphI GGTGA 4 cut(s) 95, 164, 214, 530
Hpy166II GTNNAC 4 cut(s) 112, 263, 622, 640
Hpy188III TCNNGA 3 cut(s) 611, 701, 873
Hpy8I GTNNAC 4 cut(s) 112, 263, 622, 640
Hpy99I CGWCG 2 cut(s) 584, 851
HpyAV CCTTC 3 cut(s) 63, 173, 608
HpyCH4III ACNGT 6 cut(s) 109, 247, 329, 361, 764, 796
HpyCH4IV ACGT 1 cut(s) 846
HpyCH4V TGCA 7 cut(s) 230, 239, 407, 482, 622, 665, 839
HpyF10VI GCNNNNNNNGC 8 cut(s) 38, 236, 377, 473, 482, 628, 671, 680
HpyF3I CTNAG 2 cut(s) 129, 321
HpySE526I ACGT 1 cut(s) 846
Hsp92II CATG 1 cut(s) 704
HspAI GCGC 1 cut(s) 683
Kzo9I GATC 1 cut(s) 447
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 8 cut(s) 182, 238, 385, 431, 673, 749, 757, 820
Lsp1109I GCAGC 4 cut(s) 242, 419, 494, 677
LweI GCATC 1 cut(s) 789
MaeI CTAG 7 cut(s) 38, 281, 384, 473, 819, 855, 861
MaeII ACGT 1 cut(s) 846
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 449
MboI GATC 1 cut(s) 447
MboII GAAGA 3 cut(s) 10, 133, 306
MfeI CAATTG 1 cut(s) 42
MhlI GDGCHC 6 cut(s) 130, 187, 565, 624, 633, 754
MlsI TGGCCA 1 cut(s) 467
MluCI AATT 2 cut(s) 42, 57
MluNI TGGCCA 1 cut(s) 467
MmeI TCCRAC 3 cut(s) 77, 316, 512
MnlI CCTC 6 cut(s) 16, 170, 412, 723, 840, 880
Mox20I TGGCCA 1 cut(s) 467
MroXI GAANNNNTTC 1 cut(s) 350
MscI TGGCCA 1 cut(s) 467
MseI TTAA 6 cut(s) 168, 198, 254, 426, 491, 689
MslI CAYNNNNRTG 2 cut(s) 794, 797
Msp20I TGGCCA 1 cut(s) 467
MspCI CTTAAG 1 cut(s) 197
MspI CCGG 1 cut(s) 648
MspR9I CCNGG 5 cut(s) 291, 464, 649, 716, 726
MunI CAATTG 1 cut(s) 42
MvaI CCWGG 4 cut(s) 291, 464, 716, 726
MwoI GCNNNNNNNGC 8 cut(s) 38, 236, 377, 473, 482, 628, 671, 680
NciI CCSGG 1 cut(s) 649
NdeII GATC 1 cut(s) 447
NlaIII CATG 1 cut(s) 704
NlaIV GGNNCC 3 cut(s) 218, 340, 646
PagI TCATGA 1 cut(s) 700
PasI CCCWGGG 1 cut(s) 725
PciSI GCTCTTC 1 cut(s) 146
PcsI WCGNNNNNNNCGW 1 cut(s) 585
PdmI GAANNNNTTC 1 cut(s) 350
PkrI GCNGC 4 cut(s) 232, 409, 484, 667
Psp124BI GAGCTC 2 cut(s) 187, 754
Psp6I CCWGG 4 cut(s) 289, 462, 714, 724
PspGI CCWGG 4 cut(s) 289, 462, 714, 724
PspN4I GGNNCC 3 cut(s) 218, 340, 646
PspPI GGNCC 2 cut(s) 99, 338
PstI CTGCAG 2 cut(s) 241, 409
PstNI CAGNNNCTG 3 cut(s) 236, 245, 671
RsaI GTAC 3 cut(s) 305, 400, 740
RsaNI GTAC 3 cut(s) 304, 399, 739
RseI CAYNNNNRTG 2 cut(s) 794, 797
SacI GAGCTC 2 cut(s) 187, 754
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 6 cut(s) 168, 198, 254, 426, 491, 689
SatI GCNGC 4 cut(s) 231, 408, 483, 666
Sau3AI GATC 1 cut(s) 447
Sau96I GGNCC 2 cut(s) 99, 338
SbfI CCTGCAGG 1 cut(s) 241
ScrFI CCNGG 5 cut(s) 291, 464, 649, 716, 726
SdaI CCTGCAGG 1 cut(s) 241
SduI GDGCHC 6 cut(s) 130, 187, 565, 624, 633, 754
SfaNI GCATC 1 cut(s) 789
SfcI CTRYAG 3 cut(s) 66, 237, 405
SinI GGWCC 2 cut(s) 99, 338
SmiMI CAYNNNNRTG 2 cut(s) 794, 797
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse8387I CCTGCAGG 1 cut(s) 241
Sse9I AATT 2 cut(s) 42, 57
SspMI CTAG 7 cut(s) 38, 281, 384, 473, 819, 855, 861
SstI GAGCTC 2 cut(s) 187, 754
StyD4I CCNGG 5 cut(s) 289, 462, 647, 714, 724
StyI CCWWGG 1 cut(s) 495
TaaI ACNGT 6 cut(s) 109, 247, 329, 361, 764, 796
TaiI ACGT 1 cut(s) 849
TaqI TCGA 1 cut(s) 546
TasI AATT 2 cut(s) 42, 57
Tru1I TTAA 6 cut(s) 168, 198, 254, 426, 491, 689
Tru9I TTAA 6 cut(s) 168, 198, 254, 426, 491, 689
TscAI CASTG 5 cut(s) 250, 332, 685, 767, 799
TseI GCWGC 4 cut(s) 230, 407, 482, 665
TspDTI ATGAA 3 cut(s) 10, 343, 445
TspRI CASTG 5 cut(s) 250, 332, 685, 767, 799
Vha464I CTTAAG 1 cut(s) 197
VneI GTGCAC 1 cut(s) 620
VpaK11BI GGWCC 2 cut(s) 99, 338
XcmI CCANNNNNNNNNTGG 3 cut(s) 297, 732, 767
XmnI GAANNNNTTC 1 cut(s) 350
XspI CTAG 7 cut(s) 38, 281, 384, 473, 819, 855, 861
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.