Rmu_sc0006475.1_g000003

Blue copper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006475.1
OG0000318
Physical Location & Seq
Reverse (-)
8348 .. 12170
3823 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006475.1_g000003.1.cds

Sequence Viewer

Length: 429 bp
atgaaggacttccagagatggattgcgacagccccaatccgatctgagggtggaatggcattcatgttttttagcaagggagaaattcatcatcttgagcttgtgattggtcctctcagttatctgcacagaagattgggaggatgtggtgacgatgatgaagataagtttgaggatttggtcctctttgctagagaaacagtggatttgaagatttctggccaatctgtttttaactacccagaaggagttcacaaggtgaatggaactgggttccaagaatgtgcagctcctgcaggcactgtggcattaacaagtggaaaggatgtgataaacctagcaaccacaagaagaaaatggtacatttgtggtgtttctaagcactgtcaagttggaccccagaagctattcataactgtgaatctgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

142

Amino Acids

15.75

Weight (kDa)

6.95

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000318)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G17675
fragaria_vesca FvH4_4g34040 FvH4_5g01010 FvH4_5g01020 FvH4_5g01030 FvH4_5g01040 FvH4_6g39940
malus_domestica MD04G1075600.v1.1 MD04G1075800.v1.1 MD04G1075900.v1.1 MD06G1068300.v1.1 MD12G1007700.v1.1 MD12G1007800.v1.1 MD12G1007900.v1.1 MD14G1005400.v1.1
prunus_persica Prupe.5G084000_v2.0.a1 Prupe.5G084100_v2.0.a1 Prupe.5G084200_v2.0.a1 Prupe.5G084400_v2.0.a1 Prupe.7G008700_v2.0.a1 Prupe.7G009100_v2.0.a1
pyrus_communis pycom04g06640 pycom04g06650 pycom06g06620
rosa_chinensis RchiOBHm_Chr2g0154451 RchiOBHm_Chr2g0154471 RchiOBHm_Chr4g0443531 RchiOBHm_Chr7g0200311 RchiOBHm_Chr7g0200321 RchiOBHm_Chr7g0200341 RchiOBHm_Chr7g0200371
rosa_laevigata RLG00000003732 RLG00000003733 RLG00000003734 RLG00000003735 RLG00000003736 RLG00000003737 RLG00000005919 RLG00000020779
rosa_multiflora Rmu_co8434485.1_g000001 Rmu_sc0000648.1_g000005 Rmu_sc0001118.1_g000024 Rmu_sc0003808.1_g000012 Rmu_sc0005350.1_g000004 Rmu_sc0005350.1_g000005 Rmu_sc0005350.1_g000009 Rmu_sc0005350.1_g000010 Rmu_sc0005350.1_g000011 Rmu_sc0006475.1_g000003
rosa_roxburghii Rroxscaffold_2G00094310 Rroxscaffold_2G00094320 Rroxscaffold_3G00256060 Rroxscaffold_3G00256070 Rroxscaffold_3G00256090 Rroxscaffold_3G00256100 Rroxscaffold_3G00256110 Rroxscaffold_3G00256150 Rroxscaffold_3G00256160 Rroxscaffold_5G00384080
rosa_rugosa Rorug02G0444500 Rorug02G0444600 Rorug04G0347000 Rorug07G0059100 Rorug07G0059200 Rorug07G0059300 Rorug07G0059400 Rorug07G0059500 Rorug07G0059600 Rorug07G0059700 Rorug07G0059800
rosa_samantha Rh2AG509000 Rh2AG509100 Rh2BG520300 Rh2BG520400 Rh2CG494400 Rh2CG494500 Rh2DG530600 Rh2DG530700 Rh4AG402700 Rh4BG414400 Rh4CG430000 Rh4DG409900 Rh4DG411200 Rh7AG184500 Rh7AG184600 Rh7AG184700 Rh7AG184800 Rh7AG184900 Rh7AG185000 Rh7BG187200 Rh7BG187300 Rh7BG187400 Rh7BG187800 Rh7BG187900 Rh7BG188000 Rh7BG188100 Rh7CG194900 Rh7CG195000 Rh7CG195100 Rh7CG195200 Rh7CG195300 Rh7DG188500 Rh7DG188600 Rh7DG188700 Rh7DG188800 Rh7DG188900 Rh7DG189100
rosa_wichuraiana Rw2G041800 Rw2G041810 Rw4G034720 Rw7G016160 Rw7G016170 Rw7G016180 Rw7G016190 Rw7G016200 Rw7G016210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 220
AcsI RAATTY 1 cut(s) 84
AdeI CACNNNGTG 1 cut(s) 259
AfaI GTAC 1 cut(s) 362
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 211
AluBI AGCT 3 cut(s) 100, 290, 406
AluI AGCT 3 cut(s) 100, 290, 406
AlwNI CAGNNNCTG 2 cut(s) 293, 302
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 287
ApoI RAATTY 1 cut(s) 84
Asp700I GAANNNNTTC 3 cut(s) 8, 249, 407
AspS9I GGNCC 3 cut(s) 110, 181, 395
AsuHPI GGTGA 2 cut(s) 161, 271
AvaII GGWCC 3 cut(s) 110, 181, 395
BaeI ACNNNNGTAYC 2 cut(s) 352, 385
BalI TGGCCA 1 cut(s) 222
BbvI GCAGC 1 cut(s) 299
BccI CCATC 1 cut(s) 12
BfaI CTAG 2 cut(s) 192, 338
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 1 cut(s) 288
BlsI GCNGC 1 cut(s) 289
Bme18I GGWCC 3 cut(s) 110, 181, 395
BmgT120I GGNCC 3 cut(s) 110, 181, 395
BmiI GGNNCC 2 cut(s) 275, 397
BmrI ACTGGG 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 116
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 274
BseGI GGATG 2 cut(s) 149, 331
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 36, 130
BseNI ACTGG 1 cut(s) 274
BseXI GCAGC 1 cut(s) 299
BsgI GTGCAG 2 cut(s) 110, 306
BshFI GGCC 1 cut(s) 222
BslI CCNNNNNNNGG 1 cut(s) 46
BsmI GAATGC 1 cut(s) 59
BsnI GGCC 1 cut(s) 222
Bsp143I GATC 1 cut(s) 41
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 2 cut(s) 37, 129
BspLI GGNNCC 2 cut(s) 275, 397
BspMAI CTGCAG 1 cut(s) 298
BsrI ACTGG 1 cut(s) 274
BssMI GATC 1 cut(s) 41
Bst4CI ACNGT 4 cut(s) 202, 304, 386, 418
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 298
BstDEI CTNAG 3 cut(s) 45, 116, 378
BstF5I GGATG 2 cut(s) 149, 331
BstKTI GATC 1 cut(s) 44
BstMBI GATC 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSFI CTRYAG 1 cut(s) 294
BstV1I GCAGC 1 cut(s) 299
BsuRI GGCC 1 cut(s) 222
BtsCI GGATG 2 cut(s) 149, 331
BtsIMutI CAGTG 3 cut(s) 207, 300, 382
Cac8I GCNNGC 1 cut(s) 298
CaiI CAGNNNCTG 2 cut(s) 293, 302
Cfr13I GGNCC 3 cut(s) 110, 181, 395
Csp6I GTAC 1 cut(s) 361
CviAII CATG 1 cut(s) 64
CviJI RGCY 5 cut(s) 32, 100, 222, 290, 406
CviKI_1 RGCY 5 cut(s) 32, 100, 222, 290, 406
CviQI GTAC 1 cut(s) 361
DdeI CTNAG 3 cut(s) 45, 116, 378
DpnI GATC 1 cut(s) 43
DpnII GATC 1 cut(s) 41
DraIII CACNNNGTG 1 cut(s) 259
EaeI YGGCCR 1 cut(s) 220
Eco47I GGWCC 3 cut(s) 110, 181, 395
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 65, 413
FatI CATG 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 288
FokI GGATG 2 cut(s) 156, 338
Fsp4HI GCNGC 1 cut(s) 288
FspBI CTAG 2 cut(s) 192, 338
GluI GCNGC 1 cut(s) 288
HaeIII GGCC 1 cut(s) 222
Hin1II CATG 1 cut(s) 67
HinfI GANTC 1 cut(s) 421
HphI GGTGA 2 cut(s) 161, 271
Hpy166II GTNNAC 1 cut(s) 253
Hpy188I TCNGA 2 cut(s) 41, 46
Hpy188III TCNNGA 2 cut(s) 13, 95
Hpy8I GTNNAC 1 cut(s) 253
HpyAV CCTTC 1 cut(s) 239
HpyCH4III ACNGT 4 cut(s) 202, 304, 386, 418
HpyCH4V TGCA 3 cut(s) 127, 287, 296
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 3 cut(s) 45, 116, 378
Hsp92II CATG 1 cut(s) 67
Kzo9I GATC 1 cut(s) 41
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 7 cut(s) 26, 204, 255, 255, 282, 306, 413
Lsp1109I GCAGC 1 cut(s) 299
MaeI CTAG 2 cut(s) 192, 338
MaeIII GTNAC 1 cut(s) 149
MalI GATC 1 cut(s) 43
MboI GATC 1 cut(s) 41
MboII GAAGA 4 cut(s) 144, 173, 223, 363
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 1 cut(s) 84
MluNI TGGCCA 1 cut(s) 222
MmeI TCCRAC 1 cut(s) 373
MnlI CCTC 5 cut(s) 40, 123, 134, 166, 194
Mox20I TGGCCA 1 cut(s) 222
MroXI GAANNNNTTC 3 cut(s) 8, 249, 407
MscI TGGCCA 1 cut(s) 222
MseI TTAA 2 cut(s) 234, 311
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 222
Mva1269I GAATGC 1 cut(s) 59
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 1 cut(s) 41
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 2 cut(s) 275, 397
NmuCI GTSAC 1 cut(s) 149
PctI GAATGC 1 cut(s) 59
PdmI GAANNNNTTC 3 cut(s) 8, 249, 407
PfeI GAWTC 1 cut(s) 421
PkrI GCNGC 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 275, 397
PspPI GGNCC 3 cut(s) 110, 181, 395
PstI CTGCAG 1 cut(s) 298
PstNI CAGNNNCTG 2 cut(s) 293, 302
RsaI GTAC 1 cut(s) 362
RsaNI GTAC 1 cut(s) 361
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 2 cut(s) 234, 311
SatI GCNGC 1 cut(s) 288
Sau3AI GATC 1 cut(s) 41
Sau96I GGNCC 3 cut(s) 110, 181, 395
SbfI CCTGCAGG 1 cut(s) 298
SdaI CCTGCAGG 1 cut(s) 298
SetI ASST 5 cut(s) 102, 261, 292, 339, 408
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 3 cut(s) 110, 181, 395
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse8387I CCTGCAGG 1 cut(s) 298
Sse9I AATT 1 cut(s) 84
SspMI CTAG 2 cut(s) 192, 338
TaaI ACNGT 4 cut(s) 202, 304, 386, 418
TasI AATT 1 cut(s) 84
TfiI GAWTC 1 cut(s) 421
Tru1I TTAA 2 cut(s) 234, 311
Tru9I TTAA 2 cut(s) 234, 311
TscAI CASTG 3 cut(s) 207, 307, 389
TseFI GTSAC 1 cut(s) 149
TseI GCWGC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 149
TspDTI ATGAA 5 cut(s) 17, 52, 77, 174, 400
TspRI CASTG 3 cut(s) 207, 307, 389
VpaK11BI GGWCC 3 cut(s) 110, 181, 395
XapI RAATTY 1 cut(s) 84
XmnI GAANNNNTTC 3 cut(s) 8, 249, 407
XspI CTAG 2 cut(s) 192, 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.